Wall clock time and date at job start Tue Mar 31 2020 07:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47144 * 2 1 4 4 C 1.52995 * 109.46836 * 239.99686 * 2 1 3 5 5 O 1.42897 * 109.47354 * 65.00514 * 4 2 1 6 6 C 1.53005 * 109.47071 * 119.99464 * 2 1 3 7 7 N 1.46498 * 109.47252 * 295.00038 * 6 2 1 8 8 C 1.34776 * 119.99899 * 179.97438 * 7 6 2 9 9 O 1.21588 * 119.99828 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00340 * 179.97438 * 8 7 6 11 11 C 1.39942 * 120.00299 * 175.49811 * 10 8 7 12 12 C 1.38961 * 120.03425 * 214.85535 * 11 10 8 13 13 C 1.38159 * 120.06571 * 179.74479 * 12 11 10 14 14 C 1.38164 * 120.13545 * 0.55024 * 13 12 11 15 15 C 1.38904 * 120.07133 * 359.70511 * 14 13 12 16 16 O 1.35752 * 120.03263 * 179.97438 * 15 14 13 17 17 C 1.34835 * 116.99912 * 5.36319 * 16 15 14 18 18 H 1.07992 * 120.00096 * 354.96085 * 17 16 15 19 19 C 1.38652 * 119.99710 * 174.96349 * 17 16 15 20 20 N 1.31560 * 119.99856 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00254 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47519 * 89.99848 * 21 19 17 23 23 H 1.48508 * 109.47383 * 209.99711 * 21 19 17 24 24 H 1.48497 * 109.47207 * 329.99469 * 21 19 17 25 25 C 1.38702 * 120.03665 * 35.12699 * 11 10 8 26 26 H 1.08998 * 109.47641 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47462 * 300.00071 * 1 2 3 28 28 H 1.08996 * 109.47509 * 60.00295 * 1 2 3 29 29 H 1.09011 * 109.46725 * 184.99878 * 4 2 1 30 30 H 1.08994 * 109.47235 * 304.99470 * 4 2 1 31 31 H 0.96692 * 114.00462 * 180.02562 * 5 4 2 32 32 H 1.09008 * 109.46538 * 55.00122 * 6 2 1 33 33 H 1.08994 * 109.46899 * 174.99684 * 6 2 1 34 34 H 0.96996 * 120.00334 * 0.02562 * 7 6 2 35 35 H 0.96997 * 119.99526 * 355.49948 * 10 8 7 36 36 H 1.08002 * 119.96421 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.92641 * 180.27080 * 13 12 11 38 38 H 1.08008 * 119.96195 * 179.72258 * 14 13 12 39 39 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.06688 * 359.96231 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4130 6 6 2.0400 -0.7212 1.2494 7 7 1.6524 0.0355 2.4424 8 6 1.9956 -0.4134 3.6660 9 8 2.6272 -1.4461 3.7796 10 7 1.6395 0.2830 4.7637 11 6 1.9128 -0.2297 6.0368 12 6 1.0261 -0.0038 7.0826 13 6 1.2927 -0.5141 8.3385 14 6 2.4465 -1.2406 8.5615 15 6 3.3394 -1.4654 7.5215 16 8 4.4731 -2.1789 7.7415 17 6 4.6193 -2.7351 8.9611 18 1 3.8937 -2.5361 9.7358 19 6 5.7012 -3.5625 9.2204 20 7 5.8441 -4.1049 10.4105 21 14 6.9567 -3.9061 7.8806 22 1 8.0370 -2.8891 7.9419 23 1 7.5376 -5.2580 8.0814 24 1 6.2936 -3.8445 6.5534 25 6 3.0717 -0.9591 6.2574 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2950 31 1 1.9524 -0.3834 -3.2440 32 1 1.6053 -1.7198 1.2953 33 1 3.1262 -0.7994 1.2057 34 1 1.1483 0.8592 2.3518 35 1 1.1938 1.1395 4.6711 36 1 0.1259 0.5681 6.9126 37 1 0.5998 -0.3409 9.1487 38 1 2.6543 -1.6345 9.5455 39 1 6.6012 -4.6835 10.5920 40 1 3.7643 -1.1328 5.4471 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264213622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:14 Heat of formation + Delta-G solvation = -107.899684 kcal Electronic energy + Delta-G solvation = -22789.910976 eV Core-core repulsion = 19183.505650 eV Total energy + Delta-G solvation = -3606.405326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74199 -40.58979 -38.91270 -38.22613 -36.47484 -35.55722 -34.43673 -33.55838 -31.23815 -30.06559 -27.77884 -27.23497 -26.40380 -23.94675 -22.93212 -22.01221 -21.42535 -19.89792 -19.70137 -19.10347 -18.32820 -17.35115 -17.01577 -16.84706 -16.55947 -16.17667 -15.91164 -15.69459 -15.67104 -15.31282 -14.81258 -14.65123 -14.32672 -14.24299 -14.15888 -13.74325 -13.39073 -13.24699 -12.96416 -12.74491 -12.49799 -12.31112 -12.08592 -12.05902 -11.69564 -11.57842 -11.34384 -11.01038 -10.88379 -10.86500 -10.21229 -9.35163 -8.88786 -8.50840 -6.22505 0.45140 0.66895 1.27475 1.31739 1.48553 1.50631 2.03562 2.27273 2.76119 2.93667 3.11651 3.25029 3.44607 3.83655 3.87542 4.13851 4.19695 4.37409 4.41356 4.48250 4.50878 4.61647 4.65738 4.71498 4.74601 4.88713 4.93861 5.00143 5.20950 5.33000 5.36446 5.37466 5.42476 5.46132 5.69694 5.80781 5.91729 5.96698 6.24727 6.84318 6.88938 6.98253 7.47425 7.61395 8.60692 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.003214 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.571317 B = 8710.545410 C =10080.126087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.089 0.911 4 C 0.081 3.919 5 O -0.588 6.588 6 C 0.144 3.856 7 N -0.719 5.719 8 C 0.695 3.305 9 O -0.617 6.617 10 N -0.664 5.664 11 C 0.200 3.800 12 C -0.194 4.194 13 C -0.052 4.052 14 C -0.250 4.250 15 C 0.134 3.866 16 O -0.250 6.250 17 C -0.397 4.397 18 H 0.088 0.912 19 C 0.014 3.986 20 N -0.920 5.920 21 Si 0.963 3.037 22 H -0.263 1.263 23 H -0.263 1.263 24 H -0.275 1.275 25 C -0.204 4.204 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.399 0.601 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.415 0.585 35 H 0.428 0.572 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.114 0.886 39 H 0.285 0.715 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.110 12.673 -22.608 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.107 0.893 4 C 0.003 3.997 5 O -0.397 6.397 6 C 0.020 3.980 7 N -0.377 5.377 8 C 0.395 3.605 9 O -0.497 6.497 10 N -0.314 5.314 11 C 0.105 3.895 12 C -0.215 4.215 13 C -0.070 4.070 14 C -0.270 4.270 15 C 0.084 3.916 16 O -0.157 6.157 17 C -0.473 4.473 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.561 5.561 21 Si 0.786 3.214 22 H -0.188 1.188 23 H -0.187 1.187 24 H -0.200 1.200 25 C -0.225 4.225 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.249 0.751 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.253 0.747 35 H 0.268 0.732 36 H 0.184 0.816 37 H 0.174 0.826 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.516 11.965 -22.180 28.139 hybrid contribution 0.738 -0.310 -0.339 0.869 sum -11.778 11.655 -22.519 27.959 Atomic orbital electron populations 1.21772 0.93478 1.02214 1.02441 1.21219 0.97605 1.00738 0.91720 0.89275 1.22051 0.98629 0.94183 0.84853 1.86379 1.81935 1.53976 1.17367 1.21137 0.99656 0.94902 0.82326 1.44800 1.60630 1.29254 1.02989 1.16181 0.79800 0.83025 0.81499 1.91001 1.45673 1.27043 1.85940 1.42204 1.63017 1.24229 1.01938 1.17047 0.91922 0.95929 0.84607 1.20899 1.00748 1.08067 0.91755 1.21010 0.94695 0.93663 0.97642 1.21352 0.98476 1.08039 0.99130 1.19378 0.86324 0.91779 0.94119 1.83532 1.36131 1.61392 1.34687 1.20778 1.12092 1.27821 0.86645 0.89422 1.25172 0.99342 0.94880 0.99098 1.69715 1.32042 1.32443 1.21905 0.85328 0.78618 0.78487 0.78953 1.18786 1.18717 1.20032 1.20231 1.00050 1.07941 0.94310 0.92856 0.91692 0.91836 0.92758 0.92581 0.75124 0.92132 0.92311 0.74688 0.73202 0.81628 0.82593 0.86864 0.90550 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.96 71.98 0.65 -0.93 16 2 C -0.09 -1.13 2.66 -10.79 -0.03 -1.16 16 3 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 4 C 0.08 0.91 6.43 71.98 0.46 1.37 16 5 O -0.59 -6.80 13.19 -148.98 -1.97 -8.77 16 6 C 0.14 2.51 5.06 86.38 0.44 2.95 16 7 N -0.72 -12.82 5.29 -478.53 -2.53 -15.35 16 8 C 0.69 19.72 8.41 179.05 1.51 21.23 16 9 O -0.62 -25.19 13.78 -3.99 -0.06 -25.25 16 10 N -0.66 -16.21 5.34 -317.23 -1.69 -17.91 16 11 C 0.20 6.75 6.30 38.13 0.24 6.99 16 12 C -0.19 -5.49 9.96 22.42 0.22 -5.26 16 13 C -0.05 -1.70 10.03 22.23 0.22 -1.48 16 14 C -0.25 -11.22 9.17 22.41 0.21 -11.02 16 15 C 0.13 6.82 6.64 22.56 0.15 6.97 16 16 O -0.25 -14.78 8.58 -22.81 -0.20 -14.97 16 17 C -0.40 -24.51 9.95 67.92 0.68 -23.84 16 18 H 0.09 5.54 5.43 -2.91 -0.02 5.52 16 19 C 0.01 0.82 5.49 84.83 0.47 1.29 16 20 N -0.92 -56.46 13.96 21.61 0.30 -56.16 16 21 Si 0.96 48.56 28.62 68.60 1.96 50.52 16 22 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 25 C -0.20 -9.21 8.64 22.51 0.19 -9.01 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.58 7.18 -2.38 -0.02 0.56 16 28 H 0.06 0.76 7.82 -2.39 -0.02 0.74 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.40 1.27 9.12 -74.06 -0.68 0.59 16 32 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.42 4.15 7.67 -92.71 -0.71 3.44 16 35 H 0.43 5.92 8.84 -92.71 -0.82 5.10 16 36 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.11 5.49 5.63 -2.91 -0.02 5.47 16 39 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.11 5.57 6.22 -2.91 -0.02 5.55 16 Total: -1.00 -82.99 338.98 0.12 -82.88 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -1.11 Total: 16.90 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.40 Total: -11.90 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -3.92 Total: -89.41 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -2.22 Total: -48.98 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.96 Total: 50.52 kcal Total: -82.99 0.12 -82.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264213622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.022 kcal (2) G-P(sol) polarization free energy of solvation -82.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds