Wall clock time and date at job start Tue Mar 31 2020 07:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47435 * 2 1 4 4 O 1.42902 * 109.47255 * 239.99543 * 2 1 3 5 5 C 1.53010 * 109.46969 * 119.99827 * 2 1 3 6 6 C 1.52992 * 109.47327 * 184.99626 * 5 2 1 7 7 N 1.46498 * 109.47121 * 179.97438 * 6 5 2 8 8 C 1.34777 * 119.99843 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00516 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99992 * 180.02562 * 8 7 6 11 11 C 1.39943 * 120.00236 * 175.49507 * 10 8 7 12 12 C 1.38951 * 120.03840 * 214.85472 * 11 10 8 13 13 C 1.38163 * 120.06872 * 179.74442 * 12 11 10 14 14 C 1.38169 * 120.13406 * 0.55901 * 13 12 11 15 15 C 1.38908 * 120.07176 * 359.69814 * 14 13 12 16 16 O 1.35749 * 120.03259 * 180.02562 * 15 14 13 17 17 C 1.34827 * 117.00188 * 5.35635 * 16 15 14 18 18 H 1.08003 * 120.00213 * 354.97613 * 17 16 15 19 19 C 1.38650 * 120.00111 * 174.96685 * 17 16 15 20 20 N 1.31557 * 120.00003 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46908 * 59.99890 * 21 19 17 23 23 H 1.48505 * 109.47043 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46976 * 300.00165 * 21 19 17 25 25 C 1.38706 * 120.03163 * 35.13290 * 11 10 8 26 26 H 1.08996 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47167 * 300.00282 * 1 2 3 28 28 H 1.08998 * 109.46535 * 59.99979 * 1 2 3 29 29 H 0.96698 * 113.99407 * 60.00511 * 4 2 1 30 30 H 1.09005 * 109.46556 * 65.00270 * 5 2 1 31 31 H 1.09001 * 109.46848 * 305.00319 * 5 2 1 32 32 H 1.08995 * 109.47676 * 300.00598 * 6 5 2 33 33 H 1.09005 * 109.46727 * 60.00224 * 6 5 2 34 34 H 0.96998 * 119.99964 * 0.02562 * 7 6 5 35 35 H 0.97001 * 119.99982 * 355.50477 * 10 8 7 36 36 H 1.07997 * 119.96624 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.93190 * 180.27473 * 13 12 11 38 38 H 1.07998 * 119.96103 * 179.71881 * 14 13 12 39 39 H 0.97006 * 120.00008 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.06919 * 359.95476 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2494 6 6 3.5648 -0.6134 1.3138 7 7 4.0529 -1.3035 2.5103 8 6 5.3739 -1.3397 2.7756 9 8 6.1604 -0.7993 2.0221 10 7 5.8231 -1.9750 3.8761 11 6 7.1989 -2.0943 4.1027 12 6 7.7076 -3.2367 4.7084 13 6 9.0664 -3.3574 4.9276 14 6 9.9222 -2.3383 4.5559 15 6 9.4192 -1.1914 3.9548 16 8 10.2608 -0.1909 3.5895 17 6 11.5817 -0.4181 3.7357 18 1 11.9245 -1.3294 4.2031 19 6 12.5001 0.5181 3.2858 20 7 12.0827 1.6284 2.7167 21 14 14.3303 0.2031 3.4877 22 1 14.7014 -1.0397 2.7645 23 1 15.0942 1.3474 2.9287 24 1 14.6503 0.0510 4.9298 25 6 8.0555 -1.0697 3.7280 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.7211 -0.2702 -1.9979 30 1 1.7516 -1.7716 1.2056 31 1 1.6053 -0.2617 2.1370 32 1 3.9994 -1.0729 0.4262 33 1 3.8531 0.4369 1.3575 34 1 3.4256 -1.7350 3.1113 35 1 5.1927 -2.3497 4.5111 36 1 7.0407 -4.0330 5.0041 37 1 9.4599 -4.2481 5.3945 38 1 10.9833 -2.4336 4.7327 39 1 12.7252 2.2832 2.4016 40 1 7.6621 -0.1792 3.2604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265105430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:20 Heat of formation + Delta-G solvation = -81.694841 kcal Electronic energy + Delta-G solvation = -22588.005306 eV Core-core repulsion = 18982.736307 eV Total energy + Delta-G solvation = -3605.268999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24827 -38.72118 -38.11539 -36.59764 -35.00999 -33.97377 -32.30099 -32.15201 -29.68842 -29.05559 -27.94299 -25.22589 -23.94098 -22.14470 -21.52652 -21.31000 -20.44514 -18.26499 -18.13951 -17.84937 -17.01137 -16.04402 -15.54286 -15.14302 -14.96635 -14.79159 -14.53678 -14.28579 -14.09599 -14.00499 -13.58093 -13.42786 -12.95228 -12.75070 -12.40975 -12.38648 -11.91530 -11.77155 -11.63296 -11.37972 -11.17440 -11.12634 -10.92875 -10.70453 -10.43162 -10.34844 -9.87101 -9.61669 -9.15893 -9.01336 -8.73788 -7.57359 -7.09428 -6.34353 -3.93501 2.18419 2.43622 2.76426 3.19043 3.20783 3.23496 3.45267 3.87562 4.03729 4.23829 4.42829 4.58698 4.68669 4.78780 4.99727 5.05427 5.20108 5.23343 5.38450 5.41563 5.53644 5.67359 5.70159 5.86367 5.90998 5.95705 6.17704 6.31843 6.42141 6.52658 6.63790 6.92984 7.11555 7.15224 7.31103 7.34189 7.42821 7.58105 7.91006 8.10342 8.14296 8.78768 9.10387 9.83041 10.83671 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002853 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.980831 B = 9812.809064 C =10922.279022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.103 3.897 3 H 0.060 0.940 4 O -0.565 6.565 5 C -0.124 4.124 6 C 0.140 3.860 7 N -0.749 5.749 8 C 0.697 3.303 9 O -0.559 6.559 10 N -0.683 5.683 11 C 0.193 3.807 12 C -0.237 4.237 13 C -0.059 4.059 14 C -0.247 4.247 15 C 0.167 3.833 16 O -0.174 6.174 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.270 1.270 25 C -0.186 4.186 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.379 0.621 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.401 0.599 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.270 0.730 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.898 -5.800 -0.575 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.044 3.956 3 H 0.078 0.922 4 O -0.371 6.371 5 C -0.162 4.162 6 C 0.016 3.984 7 N -0.405 5.405 8 C 0.397 3.603 9 O -0.433 6.433 10 N -0.330 5.330 11 C 0.099 3.901 12 C -0.259 4.259 13 C -0.078 4.078 14 C -0.267 4.267 15 C 0.112 3.888 16 O -0.077 6.077 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.497 5.497 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.208 4.208 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.226 0.774 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.226 0.774 35 H 0.235 0.765 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.862 -5.206 -1.080 21.529 hybrid contribution -0.076 -0.267 0.325 0.427 sum -20.938 -5.474 -0.756 21.654 Atomic orbital electron populations 1.22511 0.96278 1.02901 1.02628 1.21688 0.92646 0.95530 0.85772 0.92173 1.86573 1.77069 1.57487 1.15934 1.21827 0.95327 1.02272 0.96785 1.21153 0.92560 0.97443 0.87268 1.45095 1.05734 1.61154 1.28541 1.15982 0.82525 0.80017 0.81769 1.91030 1.54134 1.48687 1.49461 1.42464 1.06412 1.60185 1.23931 1.16952 0.80718 0.93639 0.98809 1.20236 0.95560 0.97388 1.12693 1.20476 0.92374 0.97364 0.97580 1.21165 1.00652 0.95975 1.08921 1.19145 0.90294 0.87823 0.91513 1.83992 1.16999 1.34159 1.72574 1.21293 0.78270 1.06577 1.40620 0.89076 1.25295 1.00152 0.95043 0.96101 1.70052 1.35173 1.07943 1.36506 0.85785 0.80554 0.78217 0.78854 1.19529 1.20349 1.19550 1.20202 0.90747 1.00654 1.09160 0.91737 0.91469 0.92191 0.77425 0.90480 0.89995 0.90632 0.91640 0.77408 0.76518 0.87495 0.87098 0.85519 0.92045 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.94 9.53 37.16 0.35 -0.58 16 2 C 0.10 0.72 3.58 -26.73 -0.10 0.62 16 3 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 4 O -0.56 -4.79 12.86 -35.23 -0.45 -5.25 16 5 C -0.12 -0.92 5.04 -26.73 -0.13 -1.06 16 6 C 0.14 1.59 5.57 -4.05 -0.02 1.56 16 7 N -0.75 -8.74 5.56 -65.23 -0.36 -9.10 16 8 C 0.70 11.77 8.41 -86.91 -0.73 11.04 16 9 O -0.56 -12.55 13.78 5.29 0.07 -12.48 16 10 N -0.68 -10.51 5.34 -14.24 -0.08 -10.59 16 11 C 0.19 3.79 6.30 -83.72 -0.53 3.26 16 12 C -0.24 -4.23 9.96 -39.35 -0.39 -4.63 16 13 C -0.06 -1.12 10.03 -39.63 -0.40 -1.51 16 14 C -0.25 -5.64 9.17 -39.36 -0.36 -6.00 16 15 C 0.17 4.36 6.64 -39.13 -0.26 4.10 16 16 O -0.17 -5.31 9.76 0.06 0.00 -5.31 16 17 C -0.39 -11.43 9.49 30.88 0.29 -11.14 16 18 H 0.09 2.44 5.20 -52.48 -0.27 2.16 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -26.42 13.67 55.48 0.76 -25.66 16 21 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 C -0.19 -4.50 8.64 -39.21 -0.34 -4.84 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.38 1.68 9.08 45.56 0.41 2.09 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 1.05 7.82 -51.93 -0.41 0.64 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.39 3.05 8.49 -40.82 -0.35 2.71 16 35 H 0.40 4.30 8.84 -40.82 -0.36 3.94 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.13 2.85 5.63 -52.49 -0.30 2.55 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.14 3.54 6.22 -52.49 -0.33 3.21 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -37.59 342.39 -7.17 -44.76 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.53 Total: 10.42 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.71 Total: -8.17 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.32 Total: -45.35 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.38 Total: -23.03 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.59 -7.17 -44.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265105430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.939 kcal (2) G-P(sol) polarization free energy of solvation -37.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds