Wall clock time and date at job start Tue Mar 31 2020 07:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47435 * 2 1 4 4 O 1.42902 * 109.47255 * 239.99543 * 2 1 3 5 5 C 1.53010 * 109.46969 * 119.99827 * 2 1 3 6 6 C 1.52992 * 109.47327 * 184.99626 * 5 2 1 7 7 N 1.46498 * 109.47121 * 179.97438 * 6 5 2 8 8 C 1.34777 * 119.99843 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00516 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99992 * 180.02562 * 8 7 6 11 11 C 1.39943 * 120.00236 * 175.49507 * 10 8 7 12 12 C 1.38951 * 120.03840 * 214.85472 * 11 10 8 13 13 C 1.38163 * 120.06872 * 179.74442 * 12 11 10 14 14 C 1.38169 * 120.13406 * 0.55901 * 13 12 11 15 15 C 1.38908 * 120.07176 * 359.69814 * 14 13 12 16 16 O 1.35749 * 120.03259 * 180.02562 * 15 14 13 17 17 C 1.34827 * 117.00188 * 5.35635 * 16 15 14 18 18 H 1.08003 * 120.00213 * 354.97613 * 17 16 15 19 19 C 1.38650 * 120.00111 * 174.96685 * 17 16 15 20 20 N 1.31557 * 120.00003 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46908 * 59.99890 * 21 19 17 23 23 H 1.48505 * 109.47043 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46976 * 300.00165 * 21 19 17 25 25 C 1.38706 * 120.03163 * 35.13290 * 11 10 8 26 26 H 1.08996 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47167 * 300.00282 * 1 2 3 28 28 H 1.08998 * 109.46535 * 59.99979 * 1 2 3 29 29 H 0.96698 * 113.99407 * 60.00511 * 4 2 1 30 30 H 1.09005 * 109.46556 * 65.00270 * 5 2 1 31 31 H 1.09001 * 109.46848 * 305.00319 * 5 2 1 32 32 H 1.08995 * 109.47676 * 300.00598 * 6 5 2 33 33 H 1.09005 * 109.46727 * 60.00224 * 6 5 2 34 34 H 0.96998 * 119.99964 * 0.02562 * 7 6 5 35 35 H 0.97001 * 119.99982 * 355.50477 * 10 8 7 36 36 H 1.07997 * 119.96624 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.93190 * 180.27473 * 13 12 11 38 38 H 1.07998 * 119.96103 * 179.71881 * 14 13 12 39 39 H 0.97006 * 120.00008 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.06919 * 359.95476 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2494 6 6 3.5648 -0.6134 1.3138 7 7 4.0529 -1.3035 2.5103 8 6 5.3739 -1.3397 2.7756 9 8 6.1604 -0.7993 2.0221 10 7 5.8231 -1.9750 3.8761 11 6 7.1989 -2.0943 4.1027 12 6 7.7076 -3.2367 4.7084 13 6 9.0664 -3.3574 4.9276 14 6 9.9222 -2.3383 4.5559 15 6 9.4192 -1.1914 3.9548 16 8 10.2608 -0.1909 3.5895 17 6 11.5817 -0.4181 3.7357 18 1 11.9245 -1.3294 4.2031 19 6 12.5001 0.5181 3.2858 20 7 12.0827 1.6284 2.7167 21 14 14.3303 0.2031 3.4877 22 1 14.7014 -1.0397 2.7645 23 1 15.0942 1.3474 2.9287 24 1 14.6503 0.0510 4.9298 25 6 8.0555 -1.0697 3.7280 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.7211 -0.2702 -1.9979 30 1 1.7516 -1.7716 1.2056 31 1 1.6053 -0.2617 2.1370 32 1 3.9994 -1.0729 0.4262 33 1 3.8531 0.4369 1.3575 34 1 3.4256 -1.7350 3.1113 35 1 5.1927 -2.3497 4.5111 36 1 7.0407 -4.0330 5.0041 37 1 9.4599 -4.2481 5.3945 38 1 10.9833 -2.4336 4.7327 39 1 12.7252 2.2832 2.4016 40 1 7.6621 -0.1792 3.2604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265105430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:19 Heat of formation + Delta-G solvation = -113.436321 kcal Electronic energy + Delta-G solvation = -22589.381720 eV Core-core repulsion = 18982.736307 eV Total energy + Delta-G solvation = -3606.645413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69978 -40.45341 -38.88352 -38.24826 -36.14954 -35.54666 -34.24933 -33.05225 -31.17111 -30.39092 -29.20890 -27.31090 -24.94113 -23.61893 -23.00136 -22.31631 -21.75260 -19.97202 -19.62213 -18.84876 -18.44778 -17.47212 -16.85270 -16.70115 -16.37042 -16.10858 -15.84400 -15.62662 -15.43193 -15.25051 -15.03876 -14.83940 -14.31536 -14.21730 -13.58113 -13.42019 -13.18676 -12.96363 -12.92138 -12.65345 -12.58956 -12.39189 -12.35371 -12.15255 -11.79720 -11.52271 -11.30606 -10.94190 -10.90345 -10.75061 -10.20750 -9.28918 -8.83551 -8.44947 -6.14801 0.49074 0.73196 1.34593 1.47158 1.51569 1.53615 2.03685 2.19900 2.85400 3.10446 3.19888 3.39932 3.60627 3.77023 4.05273 4.15291 4.17457 4.37551 4.38821 4.44995 4.46268 4.60370 4.72292 4.77467 4.86849 4.93515 5.05112 5.11748 5.13801 5.16116 5.32354 5.38071 5.42382 5.49708 5.66193 5.76626 5.98891 6.05374 6.24121 6.90455 6.98315 7.01358 7.48898 7.82192 8.78995 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002853 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.980831 B = 9812.809064 C =10922.279022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 H 0.058 0.942 4 O -0.590 6.590 5 C -0.113 4.113 6 C 0.140 3.860 7 N -0.721 5.721 8 C 0.690 3.310 9 O -0.621 6.621 10 N -0.664 5.664 11 C 0.200 3.800 12 C -0.204 4.204 13 C -0.048 4.048 14 C -0.256 4.256 15 C 0.125 3.875 16 O -0.237 6.237 17 C -0.415 4.415 18 H 0.107 0.893 19 C -0.029 4.029 20 N -0.926 5.926 21 Si 1.025 2.975 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.252 1.252 25 C -0.215 4.215 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.393 0.607 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.417 0.583 35 H 0.428 0.572 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.124 0.876 39 H 0.272 0.728 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.883 -9.279 1.391 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.038 3.962 3 H 0.076 0.924 4 O -0.399 6.399 5 C -0.151 4.151 6 C 0.016 3.984 7 N -0.378 5.378 8 C 0.390 3.610 9 O -0.500 6.500 10 N -0.314 5.314 11 C 0.105 3.895 12 C -0.225 4.225 13 C -0.066 4.066 14 C -0.276 4.276 15 C 0.074 3.926 16 O -0.143 6.143 17 C -0.490 4.490 18 H 0.125 0.875 19 C -0.226 4.226 20 N -0.565 5.565 21 Si 0.843 3.157 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.176 1.176 25 C -0.237 4.237 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.243 0.757 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.255 0.745 35 H 0.268 0.732 36 H 0.183 0.817 37 H 0.179 0.821 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.988 -8.757 0.940 24.617 hybrid contribution 0.191 0.630 -0.252 0.705 sum -22.797 -8.127 0.688 24.212 Atomic orbital electron populations 1.22430 0.94310 1.03102 1.03678 1.21811 0.94113 0.95183 0.85118 0.92358 1.86531 1.77783 1.58352 1.17222 1.21823 0.91766 1.03218 0.98304 1.21181 0.95399 0.96008 0.85829 1.44860 1.04148 1.60068 1.28725 1.16302 0.83614 0.79506 0.81542 1.91019 1.56233 1.51192 1.51600 1.42205 1.05286 1.59752 1.24124 1.17103 0.82065 0.92881 0.97468 1.20868 0.96013 0.96919 1.08650 1.21039 0.92358 0.97430 0.95799 1.21327 1.01380 0.95949 1.08963 1.19689 0.90697 0.88909 0.93292 1.83958 1.17922 1.36857 1.75587 1.21897 0.78542 1.07511 1.41099 0.87549 1.26749 1.06040 0.94423 0.95364 1.70232 1.37273 1.09696 1.39273 0.84575 0.72786 0.78530 0.79787 1.18063 1.19775 1.17627 1.20206 0.91108 1.01412 1.10937 0.91880 0.90304 0.91335 0.75732 0.89727 0.87351 0.93582 0.93279 0.74492 0.73182 0.81710 0.82065 0.85814 0.91917 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 9.53 71.98 0.69 -0.71 16 2 C 0.10 1.23 3.58 30.60 0.11 1.34 16 3 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 4 O -0.59 -9.82 12.86 -148.98 -1.92 -11.73 16 5 C -0.11 -1.47 5.04 30.60 0.15 -1.31 16 6 C 0.14 3.18 5.57 86.38 0.48 3.66 16 7 N -0.72 -15.82 5.56 -478.54 -2.66 -18.48 16 8 C 0.69 23.14 8.41 179.05 1.51 24.65 16 9 O -0.62 -29.51 13.78 -4.00 -0.06 -29.57 16 10 N -0.66 -18.91 5.34 -317.23 -1.70 -20.61 16 11 C 0.20 7.56 6.30 38.13 0.24 7.80 16 12 C -0.20 -6.24 9.96 22.42 0.22 -6.02 16 13 C -0.05 -1.61 10.03 22.24 0.22 -1.39 16 14 C -0.26 -11.62 9.17 22.41 0.21 -11.42 16 15 C 0.13 6.90 6.64 22.56 0.15 7.05 16 16 O -0.24 -15.62 9.76 -22.70 -0.22 -15.84 16 17 C -0.41 -25.64 9.49 67.92 0.64 -24.99 16 18 H 0.11 5.91 5.20 -2.91 -0.02 5.89 16 19 C -0.03 -1.75 5.49 84.83 0.47 -1.29 16 20 N -0.93 -60.71 13.67 21.61 0.30 -60.42 16 21 Si 1.02 44.87 29.55 68.60 2.03 46.90 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 25 C -0.21 -10.91 8.64 22.51 0.19 -10.72 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.39 3.39 9.08 -74.06 -0.67 2.72 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 1.33 7.82 -2.39 -0.02 1.32 16 33 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.42 5.08 8.49 -92.71 -0.79 4.30 16 35 H 0.43 7.26 8.84 -92.71 -0.82 6.45 16 36 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 38 H 0.12 5.58 5.63 -2.91 -0.02 5.56 16 39 H 0.27 16.29 8.31 -92.70 -0.77 15.52 16 40 H 0.10 5.66 6.22 -2.91 -0.02 5.65 16 Total: -1.00 -93.31 342.39 -0.12 -93.43 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -1.18 Total: 29.67 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 5.28 Total: -13.34 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -4.06 Total: -99.50 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -2.19 Total: -57.15 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -93.31 -0.12 -93.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265105430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.006 kcal (2) G-P(sol) polarization free energy of solvation -93.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds