Wall clock time and date at job start Tue Mar 31 2020 07:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47689 * 2 1 4 4 C 1.52997 * 109.47196 * 239.99539 * 2 1 3 5 5 C 1.53001 * 109.47104 * 175.00704 * 4 2 1 6 6 O 1.42899 * 109.46901 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.46838 * 119.99538 * 2 1 3 8 8 C 1.34778 * 120.00172 * 274.99725 * 7 2 1 9 9 O 1.21583 * 119.99530 * 0.27768 * 8 7 2 10 10 N 1.34780 * 119.99948 * 179.97438 * 8 7 2 11 11 C 1.39949 * 119.99669 * 174.83642 * 10 8 7 12 12 C 1.38951 * 120.03491 * 326.19346 * 11 10 8 13 13 C 1.38166 * 120.06705 * 179.72026 * 12 11 10 14 14 C 1.38171 * 120.13482 * 0.55755 * 13 12 11 15 15 C 1.38907 * 120.06871 * 359.71704 * 14 13 12 16 16 O 1.35750 * 120.03490 * 179.97438 * 15 14 13 17 17 C 1.34834 * 117.00137 * 185.92857 * 16 15 14 18 18 H 1.07999 * 119.99871 * 5.41511 * 17 16 15 19 19 C 1.38647 * 119.99688 * 185.41030 * 17 16 15 20 20 N 1.31560 * 119.99763 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00440 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46736 * 89.99814 * 21 19 17 23 23 H 1.48495 * 109.47408 * 210.00082 * 21 19 17 24 24 H 1.48507 * 109.47179 * 330.00349 * 21 19 17 25 25 C 1.38706 * 120.02982 * 146.46818 * 11 10 8 26 26 H 1.09005 * 109.47073 * 300.00698 * 1 2 3 27 27 H 1.09002 * 109.46798 * 60.00061 * 1 2 3 28 28 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47105 * 295.00122 * 4 2 1 30 30 H 1.08994 * 109.47056 * 54.99939 * 4 2 1 31 31 H 1.09003 * 109.46664 * 299.99687 * 5 4 2 32 32 H 1.08994 * 109.47789 * 59.99684 * 5 4 2 33 33 H 0.96703 * 114.00105 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99737 * 94.99601 * 7 2 1 35 35 H 0.96997 * 119.99775 * 354.83932 * 10 8 7 36 36 H 1.08003 * 119.97204 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.93449 * 180.25220 * 13 12 11 38 38 H 1.07996 * 119.96243 * 179.69841 * 14 13 12 39 39 H 0.97005 * 120.00137 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.07029 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 8 4.0411 -1.2867 -2.4805 7 7 2.0183 -0.6906 1.1963 8 6 2.1470 -0.0181 2.3572 9 8 1.8531 1.1603 2.4129 10 7 2.5957 -0.6536 3.4579 11 6 2.8323 0.0668 4.6342 12 6 3.2942 1.3756 4.5672 13 6 3.5225 2.0894 5.7280 14 6 3.3033 1.5008 6.9587 15 6 2.8469 0.1909 7.0323 16 8 2.6323 -0.3869 8.2418 17 6 2.3085 -1.6958 8.2461 18 1 2.3156 -2.2569 7.3234 19 6 1.9665 -2.3213 9.4353 20 7 1.6510 -3.5985 9.4396 21 14 1.9549 -1.3510 11.0315 22 1 0.6083 -0.7616 11.2427 23 1 2.2826 -2.2553 12.1629 24 1 2.9647 -0.2646 10.9577 25 6 2.6112 -0.5269 5.8681 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7516 -1.7716 -1.2054 30 1 1.6054 -0.2619 -2.1369 31 1 3.8532 0.4368 -1.3572 32 1 3.9994 -1.0729 -0.4258 33 1 5.0019 -1.2586 -2.5863 34 1 2.2489 -1.6318 1.1528 35 1 2.7547 -1.6101 3.4346 36 1 3.4712 1.8368 3.6068 37 1 3.8776 3.1078 5.6733 38 1 3.4872 2.0596 7.8643 39 1 1.4121 -4.0363 10.2717 40 1 2.2560 -1.5453 5.9227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265670098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:28 Heat of formation + Delta-G solvation = -82.331806 kcal Electronic energy + Delta-G solvation = -22987.633550 eV Core-core repulsion = 19382.336930 eV Total energy + Delta-G solvation = -3605.296620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50877 -39.03495 -37.81032 -36.76730 -35.70838 -34.25628 -32.38154 -31.81296 -29.47613 -29.16394 -28.44280 -25.21919 -23.83218 -22.63308 -21.76565 -21.02882 -20.46513 -18.68104 -17.91987 -17.72070 -17.43988 -16.36788 -15.54772 -15.51059 -15.13625 -14.80425 -14.64441 -14.50385 -14.15609 -13.80111 -13.60506 -13.43535 -13.08306 -12.83655 -12.33271 -12.29407 -12.19953 -12.08269 -11.67011 -11.43621 -11.24623 -11.16883 -10.92012 -10.77556 -10.35538 -10.28949 -10.03686 -9.69057 -9.50300 -9.22588 -8.85159 -7.77470 -7.26877 -6.42825 -4.09849 1.98521 2.30086 2.64305 3.21511 3.25861 3.28849 3.40896 3.72716 4.17626 4.23886 4.53322 4.61347 4.61727 4.83096 4.88055 5.08266 5.10114 5.13900 5.22801 5.45392 5.53264 5.59538 5.63313 5.80181 5.93224 5.99839 6.05049 6.17488 6.20121 6.38666 6.45015 6.72874 6.92397 7.16205 7.21997 7.22669 7.26727 7.61809 7.77269 7.99233 8.03396 8.61162 8.92987 9.55766 10.64965 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.003054 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.018359 B = 9165.797812 C = 9626.450378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.091 0.909 4 C -0.127 4.127 5 C 0.074 3.926 6 O -0.577 6.577 7 N -0.744 5.744 8 C 0.704 3.296 9 O -0.571 6.571 10 N -0.683 5.683 11 C 0.199 3.801 12 C -0.198 4.198 13 C -0.064 4.064 14 C -0.203 4.203 15 C 0.175 3.825 16 O -0.216 6.216 17 C -0.389 4.389 18 H 0.104 0.896 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.246 4.246 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.381 0.619 34 H 0.396 0.604 35 H 0.404 0.596 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.279 0.721 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 4.524 -19.301 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.004 4.004 6 O -0.383 6.383 7 N -0.401 5.401 8 C 0.405 3.595 9 O -0.447 6.447 10 N -0.329 5.329 11 C 0.105 3.895 12 C -0.219 4.219 13 C -0.083 4.083 14 C -0.223 4.223 15 C 0.122 3.878 16 O -0.121 6.121 17 C -0.464 4.464 18 H 0.122 0.878 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.268 4.268 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.228 0.772 34 H 0.230 0.770 35 H 0.238 0.762 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.196 5.389 -19.025 19.895 hybrid contribution 0.582 -0.807 0.726 1.231 sum 2.778 4.582 -18.299 19.067 Atomic orbital electron populations 1.22193 0.94835 1.02364 1.02911 1.20731 0.94228 0.97207 0.81978 0.89056 1.21831 0.94453 1.02275 0.97925 1.22195 0.94843 0.95946 0.87369 1.86444 1.27418 1.78810 1.45630 1.45295 1.72140 1.13733 1.08889 1.15901 0.78173 0.85278 0.80180 1.90944 1.55408 1.14254 1.84066 1.42613 1.68980 1.11546 1.09785 1.17186 0.96679 0.92021 0.83588 1.20615 1.08190 0.94455 0.98621 1.20523 0.97987 0.98477 0.91289 1.20231 1.09970 0.94105 0.97969 1.18793 0.92627 0.91506 0.84828 1.83617 1.77469 1.26197 1.24853 1.20715 1.47033 0.80786 0.97914 0.87843 1.24459 0.95292 0.95407 0.98833 1.69646 1.44109 1.09381 1.28812 0.86180 0.79570 0.80011 0.81150 1.19914 1.20822 1.18260 1.20899 1.12371 1.03112 0.90410 0.91462 0.91576 0.92368 0.90534 0.89486 0.93440 0.93351 0.77223 0.77044 0.76155 0.86109 0.86494 0.86423 0.91087 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.16 1.48 2.57 -67.93 -0.17 1.31 16 3 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 4 C -0.13 -0.92 5.12 -26.73 -0.14 -1.05 16 5 C 0.07 0.55 6.93 37.16 0.26 0.81 16 6 O -0.58 -4.55 13.66 -35.23 -0.48 -5.04 16 7 N -0.74 -7.51 4.53 -58.67 -0.27 -7.77 16 8 C 0.70 10.29 8.26 -86.91 -0.72 9.57 16 9 O -0.57 -10.43 13.73 5.29 0.07 -10.36 16 10 N -0.68 -10.20 5.35 -14.24 -0.08 -10.28 16 11 C 0.20 3.75 6.27 -83.71 -0.52 3.22 16 12 C -0.20 -3.68 8.65 -39.34 -0.34 -4.02 16 13 C -0.06 -1.14 10.03 -39.63 -0.40 -1.54 16 14 C -0.20 -4.08 9.99 -39.36 -0.39 -4.47 16 15 C 0.18 4.04 6.64 -39.13 -0.26 3.78 16 16 O -0.22 -5.67 8.58 0.04 0.00 -5.67 16 17 C -0.39 -10.82 9.90 30.88 0.31 -10.51 16 18 H 0.10 2.91 5.53 -52.49 -0.29 2.62 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -25.18 13.96 55.48 0.77 -24.41 16 21 Si 0.91 21.58 28.62 -169.99 -4.86 16.72 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.25 -5.26 9.04 -39.21 -0.35 -5.62 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.35 7.75 -51.93 -0.40 -0.05 16 33 H 0.38 1.43 9.12 45.56 0.42 1.85 16 34 H 0.40 3.00 8.62 -40.82 -0.35 2.65 16 35 H 0.40 4.83 8.83 -40.82 -0.36 4.47 16 36 H 0.12 2.21 6.45 -52.48 -0.34 1.87 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.14 2.97 5.72 -52.49 -0.30 2.67 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -33.38 341.03 -6.72 -40.10 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.54 Total: 9.56 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.48 Total: -8.00 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.43 Total: -42.46 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.41 Total: -21.06 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.86 Total: 16.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.38 -6.72 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265670098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.230 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds