Wall clock time and date at job start Tue Mar 31 2020 07:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47689 * 2 1 4 4 C 1.52997 * 109.47196 * 239.99539 * 2 1 3 5 5 C 1.53001 * 109.47104 * 175.00704 * 4 2 1 6 6 O 1.42899 * 109.46901 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.46838 * 119.99538 * 2 1 3 8 8 C 1.34778 * 120.00172 * 274.99725 * 7 2 1 9 9 O 1.21583 * 119.99530 * 0.27768 * 8 7 2 10 10 N 1.34780 * 119.99948 * 179.97438 * 8 7 2 11 11 C 1.39949 * 119.99669 * 174.83642 * 10 8 7 12 12 C 1.38951 * 120.03491 * 326.19346 * 11 10 8 13 13 C 1.38166 * 120.06705 * 179.72026 * 12 11 10 14 14 C 1.38171 * 120.13482 * 0.55755 * 13 12 11 15 15 C 1.38907 * 120.06871 * 359.71704 * 14 13 12 16 16 O 1.35750 * 120.03490 * 179.97438 * 15 14 13 17 17 C 1.34834 * 117.00137 * 185.92857 * 16 15 14 18 18 H 1.07999 * 119.99871 * 5.41511 * 17 16 15 19 19 C 1.38647 * 119.99688 * 185.41030 * 17 16 15 20 20 N 1.31560 * 119.99763 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00440 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46736 * 89.99814 * 21 19 17 23 23 H 1.48495 * 109.47408 * 210.00082 * 21 19 17 24 24 H 1.48507 * 109.47179 * 330.00349 * 21 19 17 25 25 C 1.38706 * 120.02982 * 146.46818 * 11 10 8 26 26 H 1.09005 * 109.47073 * 300.00698 * 1 2 3 27 27 H 1.09002 * 109.46798 * 60.00061 * 1 2 3 28 28 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47105 * 295.00122 * 4 2 1 30 30 H 1.08994 * 109.47056 * 54.99939 * 4 2 1 31 31 H 1.09003 * 109.46664 * 299.99687 * 5 4 2 32 32 H 1.08994 * 109.47789 * 59.99684 * 5 4 2 33 33 H 0.96703 * 114.00105 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99737 * 94.99601 * 7 2 1 35 35 H 0.96997 * 119.99775 * 354.83932 * 10 8 7 36 36 H 1.08003 * 119.97204 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.93449 * 180.25220 * 13 12 11 38 38 H 1.07996 * 119.96243 * 179.69841 * 14 13 12 39 39 H 0.97005 * 120.00137 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.07029 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 8 4.0411 -1.2867 -2.4805 7 7 2.0183 -0.6906 1.1963 8 6 2.1470 -0.0181 2.3572 9 8 1.8531 1.1603 2.4129 10 7 2.5957 -0.6536 3.4579 11 6 2.8323 0.0668 4.6342 12 6 3.2942 1.3756 4.5672 13 6 3.5225 2.0894 5.7280 14 6 3.3033 1.5008 6.9587 15 6 2.8469 0.1909 7.0323 16 8 2.6323 -0.3869 8.2418 17 6 2.3085 -1.6958 8.2461 18 1 2.3156 -2.2569 7.3234 19 6 1.9665 -2.3213 9.4353 20 7 1.6510 -3.5985 9.4396 21 14 1.9549 -1.3510 11.0315 22 1 0.6083 -0.7616 11.2427 23 1 2.2826 -2.2553 12.1629 24 1 2.9647 -0.2646 10.9577 25 6 2.6112 -0.5269 5.8681 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7516 -1.7716 -1.2054 30 1 1.6054 -0.2619 -2.1369 31 1 3.8532 0.4368 -1.3572 32 1 3.9994 -1.0729 -0.4258 33 1 5.0019 -1.2586 -2.5863 34 1 2.2489 -1.6318 1.1528 35 1 2.7547 -1.6101 3.4346 36 1 3.4712 1.8368 3.6068 37 1 3.8776 3.1078 5.6733 38 1 3.4872 2.0596 7.8643 39 1 1.4121 -4.0363 10.2717 40 1 2.2560 -1.5453 5.9227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265670098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:28 Heat of formation + Delta-G solvation = -107.963701 kcal Electronic energy + Delta-G solvation = -22988.745032 eV Core-core repulsion = 19382.336930 eV Total energy + Delta-G solvation = -3606.408102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77376 -40.63195 -38.82056 -38.01151 -36.66086 -35.64323 -34.40016 -32.79836 -30.97169 -30.19141 -29.72470 -27.18421 -24.71453 -23.71357 -23.39608 -22.00402 -21.70046 -20.15833 -19.37733 -19.29778 -18.28802 -17.41716 -17.04532 -16.80301 -16.38436 -16.10946 -15.77091 -15.65183 -15.51160 -15.44801 -15.11221 -14.70424 -14.22490 -14.14366 -14.01905 -13.63201 -13.23500 -12.91252 -12.88300 -12.77652 -12.67384 -12.46174 -12.06934 -12.05174 -11.93922 -11.52683 -11.35955 -11.14673 -10.90742 -10.81952 -10.20279 -9.36618 -8.88229 -8.49045 -6.21396 0.44134 0.67366 1.33544 1.37425 1.52396 1.54875 2.04479 2.29705 2.79908 3.07925 3.12501 3.14899 3.19690 3.95177 4.01089 4.12015 4.22205 4.32910 4.43003 4.44624 4.48133 4.57776 4.61893 4.70772 4.78642 4.86885 4.92253 4.99721 5.12228 5.28967 5.34133 5.37999 5.49814 5.51953 5.66393 5.76387 5.88636 5.99403 6.24461 6.85177 6.85760 6.92176 7.44133 7.59537 8.62251 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.003054 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.018359 B = 9165.797812 C = 9626.450378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.165 3.835 3 H 0.078 0.922 4 C -0.117 4.117 5 C 0.074 3.926 6 O -0.593 6.593 7 N -0.724 5.724 8 C 0.703 3.297 9 O -0.607 6.607 10 N -0.678 5.678 11 C 0.203 3.797 12 C -0.191 4.191 13 C -0.051 4.051 14 C -0.205 4.205 15 C 0.141 3.859 16 O -0.240 6.240 17 C -0.397 4.397 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.967 3.033 22 H -0.269 1.269 23 H -0.268 1.268 24 H -0.260 1.260 25 C -0.257 4.257 26 H 0.036 0.964 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.397 0.603 34 H 0.411 0.589 35 H 0.417 0.583 36 H 0.131 0.869 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.284 0.716 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 5.863 -20.792 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.061 3.939 3 H 0.096 0.904 4 C -0.155 4.155 5 C -0.004 4.004 6 O -0.401 6.401 7 N -0.380 5.380 8 C 0.404 3.596 9 O -0.486 6.486 10 N -0.325 5.325 11 C 0.107 3.893 12 C -0.212 4.212 13 C -0.070 4.070 14 C -0.224 4.224 15 C 0.091 3.909 16 O -0.148 6.148 17 C -0.473 4.473 18 H 0.101 0.899 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.790 3.210 22 H -0.194 1.194 23 H -0.193 1.193 24 H -0.184 1.184 25 C -0.279 4.279 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.247 0.753 34 H 0.247 0.753 35 H 0.254 0.746 36 H 0.149 0.851 37 H 0.177 0.823 38 H 0.152 0.848 39 H 0.094 0.906 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.797 6.696 -20.594 21.835 hybrid contribution 0.459 -1.111 0.856 1.475 sum 3.256 5.585 -19.739 20.770 Atomic orbital electron populations 1.22162 0.94634 1.02804 1.02382 1.20814 0.94319 0.96764 0.82053 0.90381 1.21737 0.94487 1.02407 0.96906 1.22185 0.94860 0.95990 0.87382 1.86396 1.29214 1.78853 1.45674 1.45195 1.70717 1.14361 1.07744 1.16017 0.77839 0.84944 0.80790 1.90915 1.57006 1.15940 1.84708 1.42524 1.68861 1.12200 1.08956 1.17222 0.95668 0.92448 0.83940 1.20921 1.06725 0.94155 0.99437 1.20974 0.96072 1.00049 0.89899 1.20529 1.09271 0.92941 0.99681 1.19336 0.94050 0.92998 0.84472 1.83561 1.79551 1.25162 1.26486 1.20686 1.47260 0.81874 0.97530 0.89944 1.25240 0.95165 0.96344 1.01945 1.69722 1.45939 1.10710 1.29901 0.85258 0.79512 0.78690 0.77552 1.19416 1.19260 1.18436 1.20858 1.13148 1.02546 0.91363 0.94455 0.89636 0.91430 0.89831 0.88572 0.93410 0.93292 0.75295 0.75267 0.74557 0.85131 0.82329 0.84846 0.90621 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.48 71.98 0.68 -1.99 16 2 C 0.17 2.70 2.57 44.99 0.12 2.81 16 3 H 0.08 1.54 7.58 -2.39 -0.02 1.53 16 4 C -0.12 -1.41 5.12 30.59 0.16 -1.25 16 5 C 0.07 0.93 6.93 71.98 0.50 1.43 16 6 O -0.59 -8.04 13.66 -148.98 -2.03 -10.07 16 7 N -0.72 -13.38 4.53 -457.81 -2.08 -15.45 16 8 C 0.70 19.69 8.26 179.05 1.48 21.17 16 9 O -0.61 -21.52 13.73 -3.98 -0.05 -21.58 16 10 N -0.68 -19.68 5.35 -317.23 -1.70 -21.38 16 11 C 0.20 7.50 6.27 38.13 0.24 7.73 16 12 C -0.19 -6.72 8.65 22.42 0.19 -6.53 16 13 C -0.05 -1.70 10.03 22.24 0.22 -1.48 16 14 C -0.20 -7.93 9.99 22.41 0.22 -7.70 16 15 C 0.14 6.60 6.64 22.56 0.15 6.75 16 16 O -0.24 -12.90 8.58 -22.78 -0.20 -13.09 16 17 C -0.40 -22.98 9.90 67.92 0.67 -22.30 16 18 H 0.08 4.94 5.53 -2.91 -0.02 4.93 16 19 C 0.01 0.66 5.49 84.83 0.47 1.13 16 20 N -0.92 -54.23 13.96 21.61 0.30 -53.93 16 21 Si 0.97 45.01 28.62 68.60 1.96 46.97 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 25 C -0.26 -11.24 9.04 22.51 0.20 -11.03 16 26 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.60 7.75 -2.39 -0.02 0.58 16 33 H 0.40 2.18 9.12 -74.06 -0.68 1.50 16 34 H 0.41 5.34 8.62 -92.71 -0.80 4.54 16 35 H 0.42 9.69 8.83 -92.71 -0.82 8.87 16 36 H 0.13 4.43 6.45 -2.91 -0.02 4.41 16 37 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 38 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 40 H 0.12 5.51 5.72 -2.91 -0.02 5.49 16 Total: -1.00 -73.44 341.03 0.32 -73.12 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -1.20 Total: 26.68 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 5.30 Total: -11.27 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -3.47 Total: -90.76 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -2.29 Total: -44.74 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.96 Total: 46.97 kcal Total: -73.44 0.32 -73.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265670098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.844 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds