Wall clock time and date at job start Tue Mar 31 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46788 * 2 1 4 4 N 1.46502 * 109.46617 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99496 * 269.73589 * 4 3 2 6 6 H 1.07993 * 120.00600 * 321.95654 * 5 4 3 7 7 C 1.38813 * 119.99314 * 141.95545 * 5 4 3 8 8 N 1.31627 * 119.99981 * 157.20186 * 7 5 4 9 9 Si 1.86804 * 120.00425 * 337.20036 * 7 5 4 10 10 H 1.48501 * 109.46998 * 95.69875 * 9 7 5 11 11 H 1.48496 * 109.47104 * 215.69875 * 9 7 5 12 12 H 1.48500 * 109.46783 * 335.69615 * 9 7 5 13 13 C 1.46494 * 120.00169 * 89.74265 * 4 3 2 14 14 C 1.53001 * 109.47323 * 89.99712 * 13 4 3 15 15 H 1.09004 * 109.47350 * 305.00042 * 14 13 4 16 16 O 1.42905 * 109.47130 * 64.99890 * 14 13 4 17 17 C 1.50705 * 109.47414 * 184.99943 * 14 13 4 18 18 C 1.38251 * 120.00067 * 280.23591 * 17 14 13 19 19 C 1.38212 * 120.00363 * 180.27214 * 18 17 14 20 20 C 1.38267 * 119.99487 * 359.74600 * 19 18 17 21 21 C 1.38212 * 119.99825 * 359.97438 * 20 19 18 22 22 N 1.48021 * 119.99656 * 179.97438 * 21 20 19 23 23 O 1.21794 * 119.99776 * 180.02562 * 22 21 20 24 24 O 1.21803 * 119.99894 * 0.02562 * 22 21 20 25 25 C 1.38212 * 119.99726 * 100.00086 * 17 14 13 26 26 H 1.09004 * 109.47221 * 299.99535 * 1 2 3 27 27 H 1.08993 * 109.47815 * 60.00054 * 1 2 3 28 28 H 1.09007 * 109.46952 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46685 * 239.99952 * 2 1 3 30 30 H 1.08997 * 109.47145 * 120.00211 * 2 1 3 31 31 H 1.08990 * 109.47063 * 60.00290 * 3 2 1 32 32 H 1.08999 * 109.46743 * 299.99804 * 3 2 1 33 33 H 0.96990 * 120.00507 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47521 * 329.99753 * 13 4 3 35 35 H 1.08999 * 109.47322 * 209.99259 * 13 4 3 36 36 H 0.96694 * 113.99916 * 60.00089 * 16 14 13 37 37 H 1.08006 * 120.00264 * 359.97438 * 18 17 14 38 38 H 1.07994 * 120.00310 * 179.72648 * 19 18 17 39 39 H 1.07999 * 119.99370 * 179.97438 * 20 19 18 40 40 H 1.07994 * 120.00319 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1900 1.4478 1.1851 6 1 3.8225 2.0278 2.0186 7 6 5.3570 0.7074 1.3155 8 7 6.2431 1.0318 2.2332 9 14 5.6699 -0.7493 0.1888 10 1 6.5098 -0.3173 -0.9571 11 1 6.3739 -1.8168 0.9438 12 1 4.3747 -1.2719 -0.3158 13 6 4.2369 1.4370 -1.2696 14 6 4.4917 2.8775 -1.7177 15 1 3.5454 3.4164 -1.7642 16 8 5.3606 3.5206 -0.7829 17 6 5.1350 2.8734 -3.0806 18 6 6.4896 2.6268 -3.2049 19 6 7.0806 2.6286 -4.4543 20 6 6.3160 2.8718 -5.5803 21 6 4.9606 3.1126 -5.4565 22 7 4.1422 3.3735 -6.6619 23 8 2.9479 3.5862 -6.5527 24 8 4.6631 3.3756 -7.7629 25 6 4.3696 3.1113 -4.2066 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 7.0586 0.5148 2.3242 34 1 3.6476 0.9198 -2.0268 35 1 5.1894 0.9238 -1.1374 36 1 6.2232 3.0938 -0.6899 37 1 7.0871 2.4375 -2.3253 38 1 8.1396 2.4403 -4.5510 39 1 6.7779 2.8736 -6.5565 40 1 3.3108 3.3006 -4.1098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269625690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:45 Heat of formation + Delta-G solvation = -8.866363 kcal Electronic energy + Delta-G solvation = -24029.632051 eV Core-core repulsion = 20427.521132 eV Total energy + Delta-G solvation = -3602.110919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.23314 -39.91286 -37.39768 -36.62046 -35.56286 -32.90329 -32.13020 -31.99278 -31.20884 -28.00633 -26.63069 -25.92583 -24.06884 -22.82351 -22.16314 -21.39651 -20.00747 -19.00460 -18.70858 -17.58986 -17.31626 -16.77174 -16.08658 -15.75653 -15.35502 -14.62874 -14.55970 -14.27987 -13.93732 -13.71411 -13.36595 -12.86470 -12.59075 -12.51375 -12.38054 -12.13865 -11.82700 -11.62330 -11.34066 -11.23190 -11.20694 -11.04418 -10.86309 -10.82869 -10.67787 -10.22277 -9.96864 -9.76067 -9.70414 -9.65365 -9.25061 -8.63923 -6.95859 -6.10554 -3.49848 -0.22830 0.80029 1.29468 1.33582 3.08509 3.15511 3.33757 3.38036 4.16851 4.31397 4.36616 4.60692 4.68557 4.79209 4.85918 5.00172 5.14453 5.17414 5.44643 5.46429 5.53800 5.59762 5.61932 5.73602 5.82593 5.89224 5.96084 6.04314 6.08077 6.17420 6.32276 6.40423 6.41232 6.44402 6.51619 6.78985 6.96872 7.58264 7.91341 8.13757 8.29559 8.84251 9.57560 9.96900 11.04869 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015046 B = 0.005198 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.559802 B = 5385.092026 C = 6457.568481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.149 3.851 4 N -0.594 5.594 5 C -0.249 4.249 6 H 0.080 0.920 7 C 0.036 3.964 8 N -0.895 5.895 9 Si 0.864 3.136 10 H -0.290 1.290 11 H -0.300 1.300 12 H -0.267 1.267 13 C 0.112 3.888 14 C 0.126 3.874 15 H 0.105 0.895 16 O -0.526 6.526 17 C -0.101 4.101 18 C -0.062 4.062 19 C -0.113 4.113 20 C -0.067 4.067 21 C -0.044 4.044 22 N 0.031 4.969 23 O -0.162 6.162 24 O -0.168 6.168 25 C -0.050 4.050 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.371 0.629 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 1.786 -12.126 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.023 3.977 4 N -0.314 5.314 5 C -0.378 4.378 6 H 0.098 0.902 7 C -0.164 4.164 8 N -0.536 5.536 9 Si 0.694 3.306 10 H -0.219 1.219 11 H -0.228 1.228 12 H -0.192 1.192 13 C -0.015 4.015 14 C 0.063 3.937 15 H 0.123 0.877 16 O -0.330 6.330 17 C -0.103 4.103 18 C -0.081 4.081 19 C -0.131 4.131 20 C -0.086 4.086 21 C -0.127 4.127 22 N 0.550 4.450 23 O -0.378 6.378 24 O -0.383 6.383 25 C -0.070 4.070 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.218 0.782 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.821 2.020 -11.340 11.548 hybrid contribution 0.649 -1.367 -1.110 1.877 sum -0.172 0.653 -12.451 12.469 Atomic orbital electron populations 1.21729 0.97022 1.00633 1.01126 1.22132 0.94007 1.00622 1.01824 1.20996 0.83728 0.93642 0.99324 1.44043 1.00541 1.85309 1.01488 1.18749 1.05647 1.22850 0.90519 0.90238 1.25428 0.97014 0.97572 0.96410 1.69888 1.08489 1.39265 1.35946 0.87173 0.78052 0.85495 0.79875 1.21892 1.22802 1.19218 1.21931 0.97583 0.92835 0.89140 1.21775 0.92905 0.97782 0.81211 0.87724 1.86657 1.29160 1.54991 1.62238 1.21186 0.94184 0.97565 0.97384 1.21539 0.94706 0.93239 0.98575 1.21191 1.00783 1.00095 0.91058 1.20999 0.90641 0.95708 1.01297 1.21107 0.92217 1.14309 0.85094 1.43661 1.01336 0.97447 1.02562 1.94540 0.97973 1.52038 1.93254 1.94512 1.75272 1.55411 1.13087 1.20909 1.01953 0.95043 0.89062 0.92971 0.93406 0.93698 0.93411 0.91696 0.92648 0.94414 0.92763 0.93355 0.92213 0.78196 0.83945 0.83547 0.83220 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.15 -2.51 6.26 -26.73 -0.17 -2.68 16 3 C 0.15 2.71 5.67 -4.04 -0.02 2.69 16 4 N -0.59 -12.64 2.05 -173.24 -0.35 -12.99 16 5 C -0.25 -6.34 9.41 -15.06 -0.14 -6.48 16 6 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 7 C 0.04 0.94 5.29 -17.43 -0.09 0.85 16 8 N -0.89 -25.15 13.97 55.49 0.78 -24.37 16 9 Si 0.86 20.17 25.09 -169.99 -4.27 15.91 16 10 H -0.29 -6.34 6.68 56.52 0.38 -5.96 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.11 2.11 4.17 -4.04 -0.02 2.09 16 14 C 0.13 2.06 3.45 -27.88 -0.10 1.97 16 15 H 0.11 1.67 8.00 -51.93 -0.42 1.26 16 16 O -0.53 -9.81 12.67 -35.23 -0.45 -10.26 16 17 C -0.10 -1.38 4.97 -104.62 -0.52 -1.90 16 18 C -0.06 -0.76 9.32 -39.59 -0.37 -1.13 16 19 C -0.11 -1.14 10.05 -39.58 -0.40 -1.54 16 20 C -0.07 -0.74 9.56 -39.58 -0.38 -1.11 16 21 C -0.04 -0.58 6.85 -79.95 -0.55 -1.13 16 22 N 0.03 0.46 4.45 33.96 0.15 0.61 16 23 O -0.16 -2.48 18.45 -29.46 -0.54 -3.03 16 24 O -0.17 -2.47 18.45 -29.46 -0.54 -3.02 16 25 C -0.05 -0.66 9.18 -39.58 -0.36 -1.02 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 32 H 0.04 0.60 8.07 -51.93 -0.42 0.19 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.06 1.22 3.38 -51.93 -0.18 1.04 16 36 H 0.37 6.38 7.51 45.56 0.34 6.72 16 37 H 0.14 1.63 6.80 -52.48 -0.36 1.27 16 38 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.15 1.36 7.61 -52.49 -0.40 0.96 16 40 H 0.15 1.86 7.59 -52.49 -0.40 1.46 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -29.29 340.30 -7.62 -36.91 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.78 Total: 6.15 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.74 Total: -11.04 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.57 Total: -36.76 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -1.53 Total: -16.30 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.27 Total: 15.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.29 -7.62 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269625690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.046 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds