Wall clock time and date at job start Tue Mar 31 2020 07:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46788 * 2 1 4 4 N 1.46502 * 109.46617 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99496 * 269.73589 * 4 3 2 6 6 H 1.07993 * 120.00600 * 321.95654 * 5 4 3 7 7 C 1.38813 * 119.99314 * 141.95545 * 5 4 3 8 8 N 1.31627 * 119.99981 * 157.20186 * 7 5 4 9 9 Si 1.86804 * 120.00425 * 337.20036 * 7 5 4 10 10 H 1.48501 * 109.46998 * 95.69875 * 9 7 5 11 11 H 1.48496 * 109.47104 * 215.69875 * 9 7 5 12 12 H 1.48500 * 109.46783 * 335.69615 * 9 7 5 13 13 C 1.46494 * 120.00169 * 89.74265 * 4 3 2 14 14 C 1.53001 * 109.47323 * 89.99712 * 13 4 3 15 15 H 1.09004 * 109.47350 * 305.00042 * 14 13 4 16 16 O 1.42905 * 109.47130 * 64.99890 * 14 13 4 17 17 C 1.50705 * 109.47414 * 184.99943 * 14 13 4 18 18 C 1.38251 * 120.00067 * 280.23591 * 17 14 13 19 19 C 1.38212 * 120.00363 * 180.27214 * 18 17 14 20 20 C 1.38267 * 119.99487 * 359.74600 * 19 18 17 21 21 C 1.38212 * 119.99825 * 359.97438 * 20 19 18 22 22 N 1.48021 * 119.99656 * 179.97438 * 21 20 19 23 23 O 1.21794 * 119.99776 * 180.02562 * 22 21 20 24 24 O 1.21803 * 119.99894 * 0.02562 * 22 21 20 25 25 C 1.38212 * 119.99726 * 100.00086 * 17 14 13 26 26 H 1.09004 * 109.47221 * 299.99535 * 1 2 3 27 27 H 1.08993 * 109.47815 * 60.00054 * 1 2 3 28 28 H 1.09007 * 109.46952 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46685 * 239.99952 * 2 1 3 30 30 H 1.08997 * 109.47145 * 120.00211 * 2 1 3 31 31 H 1.08990 * 109.47063 * 60.00290 * 3 2 1 32 32 H 1.08999 * 109.46743 * 299.99804 * 3 2 1 33 33 H 0.96990 * 120.00507 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47521 * 329.99753 * 13 4 3 35 35 H 1.08999 * 109.47322 * 209.99259 * 13 4 3 36 36 H 0.96694 * 113.99916 * 60.00089 * 16 14 13 37 37 H 1.08006 * 120.00264 * 359.97438 * 18 17 14 38 38 H 1.07994 * 120.00310 * 179.72648 * 19 18 17 39 39 H 1.07999 * 119.99370 * 179.97438 * 20 19 18 40 40 H 1.07994 * 120.00319 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1900 1.4478 1.1851 6 1 3.8225 2.0278 2.0186 7 6 5.3570 0.7074 1.3155 8 7 6.2431 1.0318 2.2332 9 14 5.6699 -0.7493 0.1888 10 1 6.5098 -0.3173 -0.9571 11 1 6.3739 -1.8168 0.9438 12 1 4.3747 -1.2719 -0.3158 13 6 4.2369 1.4370 -1.2696 14 6 4.4917 2.8775 -1.7177 15 1 3.5454 3.4164 -1.7642 16 8 5.3606 3.5206 -0.7829 17 6 5.1350 2.8734 -3.0806 18 6 6.4896 2.6268 -3.2049 19 6 7.0806 2.6286 -4.4543 20 6 6.3160 2.8718 -5.5803 21 6 4.9606 3.1126 -5.4565 22 7 4.1422 3.3735 -6.6619 23 8 2.9479 3.5862 -6.5527 24 8 4.6631 3.3756 -7.7629 25 6 4.3696 3.1113 -4.2066 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 7.0586 0.5148 2.3242 34 1 3.6476 0.9198 -2.0268 35 1 5.1894 0.9238 -1.1374 36 1 6.2232 3.0938 -0.6899 37 1 7.0871 2.4375 -2.3253 38 1 8.1396 2.4403 -4.5510 39 1 6.7779 2.8736 -6.5565 40 1 3.3108 3.3006 -4.1098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269625690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:44 Heat of formation + Delta-G solvation = -26.279626 kcal Electronic energy + Delta-G solvation = -24030.387147 eV Core-core repulsion = 20427.521132 eV Total energy + Delta-G solvation = -3602.866015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.30796 -40.97571 -38.79929 -37.72940 -37.02733 -34.52959 -33.45037 -32.98665 -32.70407 -29.38608 -27.68095 -27.52261 -25.43877 -23.78740 -23.65078 -22.55290 -21.53371 -20.08663 -19.80246 -19.05174 -18.66285 -17.83646 -17.54496 -17.04659 -16.69209 -16.13524 -15.87371 -15.59562 -15.17710 -14.98426 -14.60341 -14.25318 -14.13963 -14.03480 -13.54230 -13.26651 -13.10731 -12.84863 -12.74343 -12.48525 -12.34496 -12.33168 -12.30686 -12.23194 -12.21248 -11.95011 -11.48023 -11.39277 -11.14715 -10.65937 -10.59658 -10.25706 -8.71883 -8.12999 -5.49589 -1.27427 -0.12425 0.26158 0.30787 1.22679 1.43233 1.51283 2.20904 2.41475 2.96035 3.23752 3.37323 3.44412 3.64651 3.74576 3.82289 3.93133 3.99449 4.19104 4.23943 4.28350 4.42329 4.56356 4.58519 4.62862 4.72750 4.78033 4.83630 4.93228 4.95555 5.05971 5.15305 5.24513 5.25982 5.39421 5.44028 5.55962 5.99528 6.24864 6.45090 6.77745 7.02403 7.65495 8.07640 9.07056 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015046 B = 0.005198 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.559802 B = 5385.092026 C = 6457.568481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 C 0.144 3.856 4 N -0.607 5.607 5 C -0.235 4.235 6 H 0.034 0.966 7 C -0.008 4.008 8 N -0.943 5.943 9 Si 0.923 3.077 10 H -0.262 1.262 11 H -0.316 1.316 12 H -0.267 1.267 13 C 0.110 3.890 14 C 0.136 3.864 15 H 0.105 0.895 16 O -0.548 6.548 17 C -0.112 4.112 18 C -0.065 4.065 19 C -0.098 4.098 20 C -0.055 4.055 21 C -0.058 4.058 22 N 0.032 4.968 23 O -0.191 6.191 24 O -0.164 6.164 25 C -0.051 4.051 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.374 0.626 37 H 0.149 0.851 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 1.245 -14.919 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.180 4.180 3 C 0.020 3.980 4 N -0.328 5.328 5 C -0.365 4.365 6 H 0.052 0.948 7 C -0.204 4.204 8 N -0.587 5.587 9 Si 0.752 3.248 10 H -0.188 1.188 11 H -0.246 1.246 12 H -0.191 1.191 13 C -0.016 4.016 14 C 0.073 3.927 15 H 0.123 0.877 16 O -0.354 6.354 17 C -0.114 4.114 18 C -0.084 4.084 19 C -0.117 4.117 20 C -0.074 4.074 21 C -0.141 4.141 22 N 0.548 4.452 23 O -0.401 6.401 24 O -0.382 6.382 25 C -0.071 4.071 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.222 0.778 37 H 0.166 0.834 38 H 0.203 0.797 39 H 0.191 0.809 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.415 1.498 -14.174 14.259 hybrid contribution 0.517 -1.117 -0.275 1.261 sum 0.101 0.380 -14.449 14.455 Atomic orbital electron populations 1.21661 0.94051 1.01824 1.02199 1.22023 0.96611 0.99128 1.00237 1.21122 0.82143 0.94689 1.00080 1.44120 1.01725 1.85881 1.01093 1.18476 1.05495 1.21367 0.91144 0.94816 1.25839 0.96895 0.99559 0.98153 1.70010 1.09349 1.40660 1.38715 0.86196 0.78065 0.81619 0.78877 1.18818 1.24564 1.19144 1.21962 0.96860 0.94540 0.88234 1.21508 0.92985 0.95799 0.82359 0.87706 1.86629 1.29711 1.55670 1.63343 1.20787 0.95018 0.99814 0.95766 1.21777 0.94102 0.92516 0.99972 1.21571 1.02408 0.98164 0.89513 1.21397 0.89615 0.93590 1.02781 1.21245 0.92928 1.15644 0.84317 1.43873 1.01332 0.97072 1.02937 1.94543 0.98640 1.53513 1.93437 1.94490 1.75117 1.54899 1.13651 1.20884 1.02198 0.94944 0.89047 0.92654 0.91590 0.92477 0.93573 0.94637 0.93860 0.91637 0.92959 0.91452 0.93551 0.77778 0.83366 0.79712 0.80881 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.91 71.98 0.71 -2.80 16 2 C -0.14 -4.68 6.26 30.60 0.19 -4.49 16 3 C 0.14 5.19 5.67 86.38 0.49 5.68 16 4 N -0.61 -25.80 2.05 -702.02 -1.44 -27.23 16 5 C -0.23 -12.33 9.41 84.03 0.79 -11.54 16 6 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 7 C -0.01 -0.43 5.29 84.86 0.45 0.02 16 8 N -0.94 -54.70 13.97 21.65 0.30 -54.39 16 9 Si 0.92 41.76 25.09 68.60 1.72 43.48 16 10 H -0.26 -10.48 6.68 99.48 0.66 -9.82 16 11 H -0.32 -15.10 7.11 99.48 0.71 -14.39 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 13 C 0.11 3.97 4.17 86.38 0.36 4.33 16 14 C 0.14 4.28 3.45 29.85 0.10 4.38 16 15 H 0.11 3.26 8.00 -2.38 -0.02 3.24 16 16 O -0.55 -20.36 12.67 -148.98 -1.89 -22.25 16 17 C -0.11 -2.82 4.97 -19.87 -0.10 -2.92 16 18 C -0.07 -1.39 9.32 22.27 0.21 -1.18 16 19 C -0.10 -1.54 10.05 22.27 0.22 -1.32 16 20 C -0.05 -0.98 9.56 22.27 0.21 -0.76 16 21 C -0.06 -1.37 6.85 36.37 0.25 -1.12 16 22 N 0.03 0.88 4.45 -46.46 -0.21 0.67 16 23 O -0.19 -5.68 18.45 18.89 0.35 -5.33 16 24 O -0.16 -4.44 18.45 18.88 0.35 -4.09 16 25 C -0.05 -1.24 9.18 22.27 0.20 -1.04 16 26 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 32 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 33 H 0.26 14.40 8.31 -92.72 -0.77 13.63 16 34 H 0.07 2.17 8.07 -2.38 -0.02 2.15 16 35 H 0.05 1.80 3.38 -2.39 -0.01 1.80 16 36 H 0.37 12.84 7.51 -74.06 -0.56 12.29 16 37 H 0.15 2.98 6.80 -2.91 -0.02 2.96 16 38 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.17 2.30 7.61 -2.91 -0.02 2.27 16 40 H 0.16 3.56 7.59 -2.91 -0.02 3.54 16 Total: -1.00 -65.18 340.30 3.74 -61.44 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.46 Total: 20.47 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 4.10 Total: -12.76 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.34 Total: -80.95 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.19 Total: -31.67 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.72 Total: 43.48 kcal Total: -65.18 3.74 -61.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269625690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.158 kcal (2) G-P(sol) polarization free energy of solvation -65.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds