Wall clock time and date at job start Tue Mar 31 2020 07:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46844 * 2 1 4 4 N 1.46503 * 109.47114 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99756 * 90.00160 * 4 3 2 6 6 H 1.08004 * 120.00184 * 340.25294 * 5 4 3 7 7 C 1.38810 * 119.99980 * 160.53577 * 5 4 3 8 8 N 1.31617 * 120.00307 * 36.33767 * 7 5 4 9 9 Si 1.86805 * 119.99880 * 216.33642 * 7 5 4 10 10 H 1.48502 * 109.47009 * 60.00343 * 9 7 5 11 11 H 1.48506 * 109.46839 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47127 * 299.99745 * 9 7 5 13 13 C 1.46504 * 120.00224 * 269.99841 * 4 3 2 14 14 C 1.52991 * 109.47107 * 269.72699 * 13 4 3 15 15 H 1.09001 * 109.47450 * 63.19507 * 14 13 4 16 16 O 1.42900 * 109.47430 * 303.19397 * 14 13 4 17 17 C 1.50705 * 109.47163 * 183.19341 * 14 13 4 18 18 C 1.38265 * 119.99686 * 84.99673 * 17 14 13 19 19 C 1.38209 * 119.99543 * 180.02562 * 18 17 14 20 20 C 1.38258 * 120.00230 * 359.96173 * 19 18 17 21 21 C 1.38208 * 120.00216 * 359.97438 * 20 19 18 22 22 N 1.48012 * 120.00377 * 180.02562 * 21 20 19 23 23 O 1.21804 * 119.99838 * 0.02562 * 22 21 20 24 24 O 1.21802 * 120.00603 * 180.02562 * 22 21 20 25 25 C 1.38208 * 120.00177 * 264.72971 * 17 14 13 26 26 H 1.09005 * 109.47297 * 299.99779 * 1 2 3 27 27 H 1.08997 * 109.46952 * 60.00162 * 1 2 3 28 28 H 1.09000 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47186 * 239.99823 * 2 1 3 30 30 H 1.09003 * 109.47319 * 119.99651 * 2 1 3 31 31 H 1.09000 * 109.47563 * 60.00451 * 3 2 1 32 32 H 1.09000 * 109.47597 * 300.00013 * 3 2 1 33 33 H 0.97001 * 120.00580 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46687 * 29.73103 * 13 4 3 35 35 H 1.08993 * 109.46891 * 149.72350 * 13 4 3 36 36 H 0.96707 * 114.00013 * 282.17178 * 16 14 13 37 37 H 1.08001 * 119.99764 * 359.97438 * 18 17 14 38 38 H 1.08005 * 119.99675 * 179.97438 * 19 18 17 39 39 H 1.08003 * 119.99582 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.00014 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.4424 -1.1851 6 1 3.6981 1.1263 -2.0931 7 6 5.5187 1.8431 -1.2189 8 7 6.3204 1.5493 -0.2173 9 14 6.1688 2.7991 -2.6862 10 1 5.4082 4.0667 -2.8275 11 1 7.6070 3.1059 -2.4793 12 1 6.0080 1.9854 -3.9179 13 6 4.2370 1.4428 1.2697 14 6 4.4977 2.8853 1.7077 15 1 3.5474 3.3867 1.8912 16 8 5.2090 3.5748 0.6778 17 6 5.3182 2.8859 2.9718 18 6 6.6963 2.7982 2.9014 19 6 7.4488 2.7983 4.0607 20 6 6.8236 2.8868 5.2907 21 6 5.4462 2.9758 5.3610 22 7 4.7769 3.0712 6.6777 23 8 5.4401 3.0717 7.6993 24 8 3.5629 3.1492 6.7397 25 6 4.6936 2.9798 4.2011 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 7.2488 1.8296 -0.2408 34 1 3.6455 0.9332 2.0303 35 1 5.1872 0.9247 1.1410 36 1 6.1529 3.3670 0.6448 37 1 7.1846 2.7288 1.9406 38 1 8.5252 2.7293 4.0058 39 1 7.4117 2.8873 6.1965 40 1 3.6174 3.0522 4.2559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269625693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:48 Heat of formation + Delta-G solvation = 5.529549 kcal Electronic energy + Delta-G solvation = -24243.442422 eV Core-core repulsion = 20641.955757 eV Total energy + Delta-G solvation = -3601.486665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.04822 -39.61791 -37.09537 -36.44802 -35.16928 -32.85377 -31.84182 -31.69469 -30.72256 -27.66244 -26.38972 -25.68982 -23.97223 -22.58704 -21.89038 -21.00983 -19.91060 -18.70779 -18.52935 -17.41817 -17.30300 -16.46459 -15.71869 -15.42636 -14.90124 -14.45798 -14.22187 -13.88987 -13.71890 -13.47868 -13.05250 -12.83912 -12.62904 -12.01494 -11.96445 -11.65731 -11.45121 -11.31933 -11.11833 -11.05098 -11.04064 -10.93166 -10.75955 -10.70711 -10.34094 -10.05070 -9.93715 -9.82984 -9.41058 -9.31264 -8.95244 -8.37954 -6.81900 -6.01122 -3.23039 0.00107 1.09107 1.53679 1.54823 3.34527 3.40293 3.46287 3.52935 4.40760 4.48554 4.58509 4.96780 5.01562 5.11647 5.14460 5.23511 5.38917 5.56677 5.60857 5.69586 5.75533 5.79339 5.99069 6.03325 6.13681 6.17747 6.31144 6.34179 6.35557 6.43861 6.48476 6.60250 6.67810 6.82407 6.86882 7.03525 7.53605 7.69994 7.76536 8.29075 8.75356 9.06581 9.74761 10.20271 10.96973 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.005366 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.960032 B = 5217.240430 C = 6839.823252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.149 3.851 4 N -0.585 5.585 5 C -0.244 4.244 6 H 0.076 0.924 7 C 0.036 3.964 8 N -0.893 5.893 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.289 1.289 13 C 0.117 3.883 14 C 0.139 3.861 15 H 0.077 0.923 16 O -0.538 6.538 17 C -0.089 4.089 18 C -0.052 4.052 19 C -0.117 4.117 20 C -0.072 4.072 21 C -0.048 4.048 22 N 0.034 4.966 23 O -0.173 6.173 24 O -0.168 6.168 25 C -0.057 4.057 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.250 0.750 34 H 0.012 0.988 35 H 0.133 0.867 36 H 0.366 0.634 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 1.065 6.849 6.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.023 3.977 4 N -0.304 5.304 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.159 4.159 8 N -0.544 5.544 9 Si 0.711 3.289 10 H -0.211 1.211 11 H -0.220 1.220 12 H -0.215 1.215 13 C -0.010 4.010 14 C 0.076 3.924 15 H 0.095 0.905 16 O -0.349 6.349 17 C -0.091 4.091 18 C -0.070 4.070 19 C -0.136 4.136 20 C -0.091 4.091 21 C -0.131 4.131 22 N 0.551 4.449 23 O -0.387 6.387 24 O -0.383 6.383 25 C -0.076 4.076 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.150 0.850 36 H 0.222 0.778 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.064 1.284 6.074 6.208 hybrid contribution 0.688 0.315 -0.154 0.772 sum 0.752 1.599 5.920 6.178 Atomic orbital electron populations 1.21728 0.97197 1.00528 1.01075 1.22159 0.93875 1.00866 1.01598 1.20840 0.84447 0.93342 0.99114 1.43930 0.99484 1.84490 1.02475 1.19087 0.94581 1.37063 0.86332 0.90640 1.24573 0.95738 0.99199 0.96423 1.69998 1.04087 1.46152 1.34130 0.86679 0.76897 0.82387 0.82925 1.21112 1.21982 1.21514 1.22047 1.00428 0.92834 0.85723 1.21427 0.91786 0.98045 0.81119 0.90526 1.86599 1.26205 1.68377 1.53731 1.21208 0.95151 0.96666 0.96051 1.21691 0.93713 0.91651 0.99967 1.21193 1.00907 1.00677 0.90775 1.20935 0.91370 0.96682 1.00143 1.21068 0.93504 1.16185 0.82342 1.43700 1.01015 0.97026 1.03144 1.94494 1.65358 1.54184 1.24685 1.94525 0.96320 1.53473 1.93974 1.20911 1.01452 0.95558 0.89676 0.93359 0.93194 0.93726 0.92303 0.93062 0.94567 0.93372 0.93864 0.96933 0.84985 0.77792 0.83082 0.83858 0.83592 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.14 -2.48 6.26 -26.73 -0.17 -2.65 16 3 C 0.15 2.87 5.67 -4.04 -0.02 2.85 16 4 N -0.59 -13.16 2.46 -173.24 -0.43 -13.58 16 5 C -0.24 -6.06 9.44 -15.06 -0.14 -6.20 16 6 H 0.08 1.91 8.04 -52.48 -0.42 1.48 16 7 C 0.04 0.88 3.30 -17.43 -0.06 0.82 16 8 N -0.89 -20.69 7.39 55.49 0.41 -20.28 16 9 Si 0.88 20.03 29.67 -169.99 -5.04 14.98 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.12 2.45 4.91 -4.04 -0.02 2.43 16 14 C 0.14 2.67 3.48 -27.89 -0.10 2.57 16 15 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 16 O -0.54 -11.67 10.69 -35.23 -0.38 -12.05 16 17 C -0.09 -1.44 5.00 -104.62 -0.52 -1.97 16 18 C -0.05 -0.77 9.23 -39.58 -0.37 -1.13 16 19 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 20 C -0.07 -0.92 9.56 -39.58 -0.38 -1.30 16 21 C -0.05 -0.72 6.85 -79.95 -0.55 -1.27 16 22 N 0.03 0.55 4.45 33.96 0.15 0.70 16 23 O -0.17 -2.79 18.45 -29.46 -0.54 -3.33 16 24 O -0.17 -2.82 18.45 -29.46 -0.54 -3.37 16 25 C -0.06 -0.87 9.19 -39.58 -0.36 -1.23 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 33 H 0.25 5.51 8.04 -40.82 -0.33 5.19 16 34 H 0.01 0.25 8.07 -51.93 -0.42 -0.17 16 35 H 0.13 3.08 5.35 -51.93 -0.28 2.80 16 36 H 0.37 7.59 4.30 45.56 0.20 7.78 16 37 H 0.15 2.31 5.84 -52.49 -0.31 2.00 16 38 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.15 1.57 7.61 -52.48 -0.40 1.17 16 40 H 0.15 2.15 7.61 -52.49 -0.40 1.75 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -25.91 333.52 -9.00 -34.91 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.94 Total: 7.55 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.72 Total: -10.55 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.14 Total: -33.17 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.46 Total: -18.75 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.04 Total: 14.98 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -25.91 -9.00 -34.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269625693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.441 kcal (2) G-P(sol) polarization free energy of solvation -25.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds