Wall clock time and date at job start Tue Mar 31 2020 07:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46844 * 2 1 4 4 N 1.46503 * 109.47114 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99756 * 90.00160 * 4 3 2 6 6 H 1.08004 * 120.00184 * 340.25294 * 5 4 3 7 7 C 1.38810 * 119.99980 * 160.53577 * 5 4 3 8 8 N 1.31617 * 120.00307 * 36.33767 * 7 5 4 9 9 Si 1.86805 * 119.99880 * 216.33642 * 7 5 4 10 10 H 1.48502 * 109.47009 * 60.00343 * 9 7 5 11 11 H 1.48506 * 109.46839 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47127 * 299.99745 * 9 7 5 13 13 C 1.46504 * 120.00224 * 269.99841 * 4 3 2 14 14 C 1.52991 * 109.47107 * 269.72699 * 13 4 3 15 15 H 1.09001 * 109.47450 * 63.19507 * 14 13 4 16 16 O 1.42900 * 109.47430 * 303.19397 * 14 13 4 17 17 C 1.50705 * 109.47163 * 183.19341 * 14 13 4 18 18 C 1.38265 * 119.99686 * 84.99673 * 17 14 13 19 19 C 1.38209 * 119.99543 * 180.02562 * 18 17 14 20 20 C 1.38258 * 120.00230 * 359.96173 * 19 18 17 21 21 C 1.38208 * 120.00216 * 359.97438 * 20 19 18 22 22 N 1.48012 * 120.00377 * 180.02562 * 21 20 19 23 23 O 1.21804 * 119.99838 * 0.02562 * 22 21 20 24 24 O 1.21802 * 120.00603 * 180.02562 * 22 21 20 25 25 C 1.38208 * 120.00177 * 264.72971 * 17 14 13 26 26 H 1.09005 * 109.47297 * 299.99779 * 1 2 3 27 27 H 1.08997 * 109.46952 * 60.00162 * 1 2 3 28 28 H 1.09000 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47186 * 239.99823 * 2 1 3 30 30 H 1.09003 * 109.47319 * 119.99651 * 2 1 3 31 31 H 1.09000 * 109.47563 * 60.00451 * 3 2 1 32 32 H 1.09000 * 109.47597 * 300.00013 * 3 2 1 33 33 H 0.97001 * 120.00580 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46687 * 29.73103 * 13 4 3 35 35 H 1.08993 * 109.46891 * 149.72350 * 13 4 3 36 36 H 0.96707 * 114.00013 * 282.17178 * 16 14 13 37 37 H 1.08001 * 119.99764 * 359.97438 * 18 17 14 38 38 H 1.08005 * 119.99675 * 179.97438 * 19 18 17 39 39 H 1.08003 * 119.99582 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.00014 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.4424 -1.1851 6 1 3.6981 1.1263 -2.0931 7 6 5.5187 1.8431 -1.2189 8 7 6.3204 1.5493 -0.2173 9 14 6.1688 2.7991 -2.6862 10 1 5.4082 4.0667 -2.8275 11 1 7.6070 3.1059 -2.4793 12 1 6.0080 1.9854 -3.9179 13 6 4.2370 1.4428 1.2697 14 6 4.4977 2.8853 1.7077 15 1 3.5474 3.3867 1.8912 16 8 5.2090 3.5748 0.6778 17 6 5.3182 2.8859 2.9718 18 6 6.6963 2.7982 2.9014 19 6 7.4488 2.7983 4.0607 20 6 6.8236 2.8868 5.2907 21 6 5.4462 2.9758 5.3610 22 7 4.7769 3.0712 6.6777 23 8 5.4401 3.0717 7.6993 24 8 3.5629 3.1492 6.7397 25 6 4.6936 2.9798 4.2011 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 7.2488 1.8296 -0.2408 34 1 3.6455 0.9332 2.0303 35 1 5.1872 0.9247 1.1410 36 1 6.1529 3.3670 0.6448 37 1 7.1846 2.7288 1.9406 38 1 8.5252 2.7293 4.0058 39 1 7.4117 2.8873 6.1965 40 1 3.6174 3.0522 4.2559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269625693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:48 Heat of formation + Delta-G solvation = -6.407059 kcal Electronic energy + Delta-G solvation = -24243.960033 eV Core-core repulsion = 20641.955757 eV Total energy + Delta-G solvation = -3602.004276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.27937 -40.86597 -38.63089 -37.70261 -36.70813 -34.45576 -33.24429 -32.87182 -32.24212 -29.17499 -27.60662 -27.29010 -25.44503 -23.73895 -23.31042 -22.36735 -21.47016 -19.98837 -19.78410 -18.98959 -18.64518 -17.77738 -17.17991 -16.78627 -16.48941 -15.92843 -15.59159 -15.49210 -15.02651 -14.90522 -14.49891 -14.19809 -13.95408 -13.43568 -13.18611 -13.07848 -12.88668 -12.71918 -12.62164 -12.57227 -12.36138 -12.32598 -12.25750 -12.14034 -11.98787 -11.73776 -11.65807 -11.35378 -10.88287 -10.54296 -10.33816 -10.06744 -8.54894 -7.82824 -5.07218 -1.21114 -0.02036 0.33665 0.35195 1.50628 1.55035 1.66661 2.32237 2.58262 3.23766 3.27861 3.50310 3.66222 3.89127 3.94713 3.95727 4.12740 4.20247 4.22564 4.38039 4.50835 4.63926 4.67734 4.74854 4.78890 4.84506 4.94380 4.99154 5.09538 5.13280 5.21101 5.25080 5.39192 5.40493 5.52952 5.58485 5.78732 5.82065 6.49610 6.51595 7.13400 7.29313 7.97914 8.41416 9.13238 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.005366 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.960032 B = 5217.240430 C = 6839.823252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.601 5.601 5 C -0.271 4.271 6 H 0.060 0.940 7 C 0.019 3.981 8 N -0.889 5.889 9 Si 0.920 3.080 10 H -0.302 1.302 11 H -0.285 1.285 12 H -0.294 1.294 13 C 0.122 3.878 14 C 0.145 3.855 15 H 0.072 0.928 16 O -0.556 6.556 17 C -0.102 4.102 18 C -0.056 4.056 19 C -0.100 4.100 20 C -0.057 4.057 21 C -0.059 4.059 22 N 0.034 4.966 23 O -0.160 6.160 24 O -0.199 6.199 25 C -0.059 4.059 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.256 0.744 34 H 0.017 0.983 35 H 0.112 0.888 36 H 0.368 0.632 37 H 0.146 0.854 38 H 0.185 0.815 39 H 0.175 0.825 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 1.136 8.243 8.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.321 5.321 5 C -0.398 4.398 6 H 0.078 0.922 7 C -0.178 4.178 8 N -0.539 5.539 9 Si 0.751 3.249 10 H -0.231 1.231 11 H -0.211 1.211 12 H -0.221 1.221 13 C -0.005 4.005 14 C 0.083 3.917 15 H 0.090 0.910 16 O -0.368 6.368 17 C -0.104 4.104 18 C -0.074 4.074 19 C -0.118 4.118 20 C -0.076 4.076 21 C -0.142 4.142 22 N 0.549 4.451 23 O -0.379 6.379 24 O -0.407 6.407 25 C -0.079 4.079 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.130 0.870 36 H 0.224 0.776 37 H 0.163 0.837 38 H 0.202 0.798 39 H 0.192 0.808 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.229 1.350 7.473 7.693 hybrid contribution 0.410 0.294 -0.520 0.725 sum 1.639 1.644 6.953 7.330 Atomic orbital electron populations 1.21660 0.94283 1.01847 1.01943 1.22003 0.96353 0.98932 1.00230 1.20958 0.83090 0.94695 0.99213 1.44059 1.00649 1.85219 1.02196 1.19107 0.95230 1.38593 0.86893 0.92216 1.24867 0.95895 0.99245 0.97766 1.70036 1.04262 1.45553 1.34031 0.86101 0.76600 0.80641 0.81596 1.23057 1.21092 1.22096 1.21927 0.99303 0.93917 0.85357 1.21204 0.92045 0.96439 0.82044 0.90971 1.86566 1.26465 1.68800 1.54973 1.20832 0.95688 0.98997 0.94917 1.21763 0.93162 0.91545 1.00929 1.21560 1.02612 0.98414 0.89193 1.21348 0.90433 0.94299 1.01525 1.21204 0.94361 1.17182 0.81477 1.43859 1.00945 0.96742 1.03518 1.94469 1.65165 1.53186 1.25081 1.94536 0.96802 1.55161 1.94195 1.20833 1.01643 0.95736 0.89665 0.92192 0.92626 0.92187 0.94259 0.93768 0.93435 0.94146 0.93271 0.96470 0.87035 0.77605 0.83689 0.79808 0.80801 0.83514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.14 -4.64 6.26 30.59 0.19 -4.45 16 3 C 0.15 5.70 5.67 86.38 0.49 6.19 16 4 N -0.60 -27.58 2.46 -702.02 -1.72 -29.30 16 5 C -0.27 -13.78 9.44 84.03 0.79 -12.99 16 6 H 0.06 3.14 8.04 -2.91 -0.02 3.12 16 7 C 0.02 0.91 3.30 84.86 0.28 1.19 16 8 N -0.89 -41.02 7.39 21.65 0.16 -40.86 16 9 Si 0.92 41.36 29.67 68.60 2.04 43.40 16 10 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 C 0.12 5.16 4.91 86.38 0.42 5.59 16 14 C 0.14 5.59 3.48 29.85 0.10 5.69 16 15 H 0.07 2.80 8.05 -2.39 -0.02 2.78 16 16 O -0.56 -24.24 10.69 -148.98 -1.59 -25.83 16 17 C -0.10 -3.25 5.00 -19.86 -0.10 -3.35 16 18 C -0.06 -1.53 9.23 22.27 0.21 -1.33 16 19 C -0.10 -2.03 10.05 22.27 0.22 -1.81 16 20 C -0.06 -1.24 9.56 22.27 0.21 -1.03 16 21 C -0.06 -1.65 6.85 36.38 0.25 -1.40 16 22 N 0.03 1.05 4.45 -46.47 -0.21 0.84 16 23 O -0.16 -4.76 18.45 18.88 0.35 -4.41 16 24 O -0.20 -6.60 18.45 18.88 0.35 -6.25 16 25 C -0.06 -1.77 9.19 22.27 0.20 -1.56 16 26 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 32 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 33 H 0.26 11.07 8.04 -92.71 -0.75 10.32 16 34 H 0.02 0.69 8.07 -2.39 -0.02 0.68 16 35 H 0.11 5.24 5.35 -2.39 -0.01 5.23 16 36 H 0.37 15.19 4.30 -74.05 -0.32 14.87 16 37 H 0.15 4.21 5.84 -2.91 -0.02 4.19 16 38 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.17 2.87 7.61 -2.91 -0.02 2.85 16 40 H 0.15 4.28 7.61 -2.91 -0.02 4.26 16 Total: -1.00 -55.76 333.52 4.12 -51.63 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.76 Total: 22.96 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 3.99 Total: -12.18 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.77 Total: -69.32 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.90 Total: -36.49 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.04 Total: 43.40 kcal Total: -55.76 4.12 -51.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269625693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.227 kcal (2) G-P(sol) polarization free energy of solvation -55.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds