Wall clock time and date at job start Tue Mar 31 2020 08:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 109.46919 * 2 1 4 4 C 1.46898 * 111.00581 * 300.39035 * 3 2 1 5 5 C 1.50697 * 109.47014 * 293.95564 * 4 3 2 6 6 H 1.07995 * 120.00110 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99845 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00248 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47224 * 90.00063 * 9 7 5 11 11 H 1.48500 * 109.47272 * 210.00555 * 9 7 5 12 12 H 1.48508 * 109.47184 * 330.00361 * 9 7 5 13 13 C 1.46907 * 110.99921 * 64.34654 * 3 2 1 14 14 C 1.52997 * 109.47091 * 75.65487 * 13 3 2 15 15 H 1.09006 * 109.47291 * 301.83312 * 14 13 3 16 16 O 1.42896 * 109.47292 * 61.83910 * 14 13 3 17 17 C 1.50707 * 109.46926 * 181.83514 * 14 13 3 18 18 C 1.38251 * 119.99953 * 279.72760 * 17 14 13 19 19 C 1.38217 * 119.99828 * 179.76821 * 18 17 14 20 20 C 1.38253 * 120.00036 * 0.50435 * 19 18 17 21 21 C 1.38215 * 119.99939 * 359.74730 * 20 19 18 22 22 N 1.48015 * 120.00203 * 179.97438 * 21 20 19 23 23 O 1.21792 * 120.00312 * 180.02562 * 22 21 20 24 24 O 1.21809 * 119.99789 * 0.02562 * 22 21 20 25 25 C 1.38217 * 119.99649 * 100.00184 * 17 14 13 26 26 H 1.09004 * 109.46979 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47464 * 299.94559 * 1 2 3 28 28 H 1.09002 * 109.47497 * 59.94842 * 1 2 3 29 29 H 1.08998 * 109.46989 * 120.00395 * 2 1 3 30 30 H 1.08994 * 109.46775 * 240.00331 * 2 1 3 31 31 H 1.09004 * 109.46887 * 53.95100 * 4 3 2 32 32 H 1.08993 * 109.47434 * 173.95064 * 4 3 2 33 33 H 0.97004 * 119.99943 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47341 * 195.65936 * 13 3 2 35 35 H 1.09007 * 109.46959 * 315.65471 * 13 3 2 36 36 H 0.96697 * 114.00566 * 59.98955 * 16 14 13 37 37 H 1.08002 * 120.00246 * 0.02562 * 18 17 14 38 38 H 1.08001 * 119.99820 * 180.23305 * 19 18 17 39 39 H 1.07992 * 120.00006 * 179.72775 * 20 19 18 40 40 H 1.07994 * 120.00336 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5410 2.1127 -1.1829 5 6 2.1552 1.5153 -2.4227 6 1 2.8329 0.6785 -2.3401 7 6 1.8511 2.0364 -3.6624 8 7 1.0255 3.0551 -3.7630 9 14 2.6130 1.2964 -5.1991 10 1 1.7364 0.2141 -5.7142 11 1 2.7600 2.3499 -6.2353 12 1 3.9485 0.7368 -4.8692 13 6 1.6353 2.0792 1.2363 14 6 2.5261 1.6042 2.3860 15 1 2.4288 0.5244 2.4988 16 8 3.8872 1.9328 2.1010 17 6 2.1024 2.2829 3.6631 18 6 2.5158 3.5750 3.9294 19 6 2.1232 4.1991 5.0985 20 6 1.3258 3.5275 6.0065 21 6 0.9167 2.2339 5.7427 22 7 0.0634 1.5147 6.7150 23 8 -0.2966 0.3746 6.4828 24 8 -0.2787 2.0630 7.7474 25 6 1.3051 1.6114 4.5708 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5130 0.8904 28 1 -0.3634 0.5146 -0.8895 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 0.4553 2.0358 -1.2421 32 1 1.8272 3.1614 -1.1048 33 1 0.8118 3.4219 -4.6352 34 1 1.7571 3.1540 1.1024 35 1 0.5935 1.8578 1.4685 36 1 4.0480 2.8796 1.9878 37 1 3.1421 4.0982 3.2219 38 1 2.4431 5.2098 5.3047 39 1 1.0227 4.0136 6.9219 40 1 0.9855 0.6007 4.3647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269664985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:01 Heat of formation + Delta-G solvation = -21.513121 kcal Electronic energy + Delta-G solvation = -23475.563867 eV Core-core repulsion = 19872.904543 eV Total energy + Delta-G solvation = -3602.659324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.36651 -40.18850 -37.94403 -36.74537 -36.12537 -32.71612 -32.30991 -32.15967 -29.76592 -28.54994 -26.80331 -25.97362 -23.86215 -23.21913 -22.84477 -21.48848 -19.47489 -19.23055 -18.83226 -17.70815 -17.14543 -16.46687 -16.27375 -16.12427 -15.23113 -15.09786 -14.69013 -14.41789 -14.21962 -13.68270 -13.46191 -12.94189 -12.65200 -12.54986 -12.23852 -11.92371 -11.75027 -11.55572 -11.47594 -11.36795 -11.31881 -11.20318 -10.84608 -10.81111 -10.60958 -10.24032 -10.09669 -9.92082 -9.86635 -9.49584 -9.15684 -8.49246 -7.27244 -6.08497 -4.09317 -0.39720 0.58304 1.11960 1.18730 2.93589 3.28234 3.34905 3.39351 3.92420 4.10809 4.33120 4.39501 4.42033 4.53938 4.65615 4.72336 5.04728 5.11147 5.24671 5.27771 5.34420 5.40613 5.57295 5.66498 5.69334 5.85960 5.88358 5.92217 6.07757 6.14697 6.23157 6.34383 6.61288 6.82121 7.18903 7.32248 7.44536 7.65964 7.74165 8.00280 8.10532 8.46379 8.98398 9.55153 11.02293 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.003265 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.172944 B = 8572.821947 C = 9005.226946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.059 3.941 3 N -0.523 5.523 4 C 0.190 3.810 5 C -0.504 4.504 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.022 3.978 14 C 0.153 3.847 15 H 0.110 0.890 16 O -0.533 6.533 17 C -0.104 4.104 18 C -0.059 4.059 19 C -0.113 4.113 20 C -0.061 4.061 21 C -0.043 4.043 22 N 0.029 4.971 23 O -0.159 6.159 24 O -0.164 6.164 25 C -0.047 4.047 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.083 0.917 31 H -0.001 1.001 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.370 0.630 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.471 1.925 17.544 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.069 4.069 3 N -0.246 5.246 4 C 0.065 3.935 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.107 4.107 14 C 0.093 3.907 15 H 0.128 0.872 16 O -0.337 6.337 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.131 4.131 20 C -0.080 4.080 21 C -0.126 4.126 22 N 0.549 4.451 23 O -0.375 6.375 24 O -0.380 6.380 25 C -0.066 4.066 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.017 0.983 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.217 0.783 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.396 1.739 16.946 17.202 hybrid contribution -1.043 0.204 -0.600 1.220 sum 1.353 1.943 16.345 16.516 Atomic orbital electron populations 1.22414 0.99396 1.01181 1.02004 1.22008 0.92009 0.91400 1.01481 1.62260 1.59163 1.01814 1.01337 1.19812 0.94098 0.93525 0.86044 1.21131 1.26817 1.16241 0.90091 0.91832 1.24973 0.95331 0.95116 0.99178 1.69948 1.35342 1.24330 1.24367 0.86515 0.79748 0.78716 0.82569 1.20757 1.21302 1.19718 1.22771 0.96629 0.99317 0.91995 1.20913 0.82993 0.99299 0.87492 0.87197 1.86686 1.24602 1.29314 1.93148 1.20912 0.97014 0.94977 0.97658 1.21480 0.96044 0.93663 0.96547 1.21204 0.97625 1.00903 0.93402 1.21065 0.94961 0.91318 1.00706 1.21107 1.03247 0.95143 0.93094 1.43642 0.99480 1.00865 1.01161 1.94556 1.58087 1.02635 1.82249 1.94526 1.59159 1.69621 1.14646 1.20916 0.94330 1.01268 0.90093 0.93203 0.93907 0.91027 0.93090 0.89850 0.98320 0.95595 0.92941 0.91057 0.94081 0.78254 0.83806 0.83350 0.83030 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 9.28 37.16 0.34 -2.90 16 2 C 0.06 1.07 5.75 -3.83 -0.02 1.05 16 3 N -0.52 -10.21 4.53 -236.08 -1.07 -11.28 16 4 C 0.19 4.61 4.45 -4.98 -0.02 4.58 16 5 C -0.50 -13.56 8.52 -34.44 -0.29 -13.85 16 6 H 0.06 1.71 7.10 -52.49 -0.37 1.34 16 7 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -25.90 13.29 55.43 0.74 -25.17 16 9 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.02 0.34 4.51 -3.82 -0.02 0.32 16 14 C 0.15 1.92 3.28 -27.88 -0.09 1.83 16 15 H 0.11 1.41 6.66 -51.93 -0.35 1.06 16 16 O -0.53 -7.15 13.08 -35.23 -0.46 -7.61 16 17 C -0.10 -1.07 4.97 -104.62 -0.52 -1.59 16 18 C -0.06 -0.48 9.32 -39.58 -0.37 -0.85 16 19 C -0.11 -0.79 10.05 -39.58 -0.40 -1.19 16 20 C -0.06 -0.53 9.56 -39.58 -0.38 -0.91 16 21 C -0.04 -0.48 6.85 -79.95 -0.55 -1.02 16 22 N 0.03 0.38 4.45 33.96 0.15 0.54 16 23 O -0.16 -2.24 18.45 -29.46 -0.54 -2.78 16 24 O -0.16 -2.19 18.45 -29.46 -0.54 -2.74 16 25 C -0.05 -0.50 9.18 -39.58 -0.36 -0.87 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.66 6.23 -51.93 -0.32 0.34 16 28 H 0.07 1.44 6.27 -51.93 -0.33 1.11 16 29 H 0.05 0.80 6.72 -51.93 -0.35 0.45 16 30 H 0.08 1.66 6.87 -51.93 -0.36 1.31 16 31 H 0.00 -0.02 5.99 -51.93 -0.31 -0.33 16 32 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.07 1.08 7.74 -51.93 -0.40 0.67 16 35 H 0.04 0.63 5.85 -51.93 -0.30 0.32 16 36 H 0.37 3.73 7.50 45.56 0.34 4.07 16 37 H 0.14 0.87 6.78 -52.49 -0.36 0.51 16 38 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.15 1.07 7.61 -52.49 -0.40 0.67 16 40 H 0.15 1.57 7.59 -52.49 -0.40 1.17 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -31.26 335.53 -8.76 -40.02 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.29 Total: 1.81 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.77 Total: -13.98 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.18 Total: -35.91 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.55 Total: -13.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.26 -8.76 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269664985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.508 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds