Wall clock time and date at job start Tue Mar 31 2020 08:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 109.46919 * 2 1 4 4 C 1.46898 * 111.00581 * 300.39035 * 3 2 1 5 5 C 1.50697 * 109.47014 * 293.95564 * 4 3 2 6 6 H 1.07995 * 120.00110 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99845 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00248 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47224 * 90.00063 * 9 7 5 11 11 H 1.48500 * 109.47272 * 210.00555 * 9 7 5 12 12 H 1.48508 * 109.47184 * 330.00361 * 9 7 5 13 13 C 1.46907 * 110.99921 * 64.34654 * 3 2 1 14 14 C 1.52997 * 109.47091 * 75.65487 * 13 3 2 15 15 H 1.09006 * 109.47291 * 301.83312 * 14 13 3 16 16 O 1.42896 * 109.47292 * 61.83910 * 14 13 3 17 17 C 1.50707 * 109.46926 * 181.83514 * 14 13 3 18 18 C 1.38251 * 119.99953 * 279.72760 * 17 14 13 19 19 C 1.38217 * 119.99828 * 179.76821 * 18 17 14 20 20 C 1.38253 * 120.00036 * 0.50435 * 19 18 17 21 21 C 1.38215 * 119.99939 * 359.74730 * 20 19 18 22 22 N 1.48015 * 120.00203 * 179.97438 * 21 20 19 23 23 O 1.21792 * 120.00312 * 180.02562 * 22 21 20 24 24 O 1.21809 * 119.99789 * 0.02562 * 22 21 20 25 25 C 1.38217 * 119.99649 * 100.00184 * 17 14 13 26 26 H 1.09004 * 109.46979 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47464 * 299.94559 * 1 2 3 28 28 H 1.09002 * 109.47497 * 59.94842 * 1 2 3 29 29 H 1.08998 * 109.46989 * 120.00395 * 2 1 3 30 30 H 1.08994 * 109.46775 * 240.00331 * 2 1 3 31 31 H 1.09004 * 109.46887 * 53.95100 * 4 3 2 32 32 H 1.08993 * 109.47434 * 173.95064 * 4 3 2 33 33 H 0.97004 * 119.99943 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47341 * 195.65936 * 13 3 2 35 35 H 1.09007 * 109.46959 * 315.65471 * 13 3 2 36 36 H 0.96697 * 114.00566 * 59.98955 * 16 14 13 37 37 H 1.08002 * 120.00246 * 0.02562 * 18 17 14 38 38 H 1.08001 * 119.99820 * 180.23305 * 19 18 17 39 39 H 1.07992 * 120.00006 * 179.72775 * 20 19 18 40 40 H 1.07994 * 120.00336 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5410 2.1127 -1.1829 5 6 2.1552 1.5153 -2.4227 6 1 2.8329 0.6785 -2.3401 7 6 1.8511 2.0364 -3.6624 8 7 1.0255 3.0551 -3.7630 9 14 2.6130 1.2964 -5.1991 10 1 1.7364 0.2141 -5.7142 11 1 2.7600 2.3499 -6.2353 12 1 3.9485 0.7368 -4.8692 13 6 1.6353 2.0792 1.2363 14 6 2.5261 1.6042 2.3860 15 1 2.4288 0.5244 2.4988 16 8 3.8872 1.9328 2.1010 17 6 2.1024 2.2829 3.6631 18 6 2.5158 3.5750 3.9294 19 6 2.1232 4.1991 5.0985 20 6 1.3258 3.5275 6.0065 21 6 0.9167 2.2339 5.7427 22 7 0.0634 1.5147 6.7150 23 8 -0.2966 0.3746 6.4828 24 8 -0.2787 2.0630 7.7474 25 6 1.3051 1.6114 4.5708 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5130 0.8904 28 1 -0.3634 0.5146 -0.8895 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 0.4553 2.0358 -1.2421 32 1 1.8272 3.1614 -1.1048 33 1 0.8118 3.4219 -4.6352 34 1 1.7571 3.1540 1.1024 35 1 0.5935 1.8578 1.4685 36 1 4.0480 2.8796 1.9878 37 1 3.1421 4.0982 3.2219 38 1 2.4431 5.2098 5.3047 39 1 1.0227 4.0136 6.9219 40 1 0.9855 0.6007 4.3647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269664985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:01 Heat of formation + Delta-G solvation = -42.406834 kcal Electronic energy + Delta-G solvation = -23476.469886 eV Core-core repulsion = 19872.904543 eV Total energy + Delta-G solvation = -3603.565343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.30495 -41.03461 -39.19665 -37.73574 -37.35196 -34.70297 -33.21871 -32.90283 -31.17365 -30.10498 -27.68179 -27.53483 -25.22945 -24.60932 -23.75156 -22.52784 -20.97571 -20.11452 -19.79548 -18.66057 -18.38598 -17.90486 -17.32262 -17.21136 -16.67979 -16.46662 -15.94847 -15.69179 -15.14864 -14.85120 -14.59829 -14.32692 -14.04125 -13.59550 -13.29719 -13.14965 -13.11561 -12.81563 -12.77765 -12.73078 -12.59102 -12.50049 -12.35528 -12.31302 -12.10130 -11.89106 -11.50243 -11.41863 -11.00925 -10.60794 -10.58718 -10.22032 -8.87548 -8.18446 -6.26407 -1.27757 -0.12150 0.26570 0.32543 1.41465 1.42198 1.53561 2.21895 2.41370 3.01032 3.14911 3.34786 3.44296 3.67863 3.74113 3.82770 3.91427 3.94996 4.15726 4.19818 4.29366 4.45568 4.53663 4.58517 4.66390 4.71939 4.80010 4.92349 4.98144 5.01372 5.06570 5.21887 5.23389 5.38508 5.45550 5.49943 5.68893 6.08992 6.36053 6.42792 6.65305 6.84163 6.90303 7.42808 8.91972 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.003265 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.172944 B = 8572.821947 C = 9005.226946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.058 3.942 3 N -0.530 5.530 4 C 0.206 3.794 5 C -0.516 4.516 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.023 3.977 14 C 0.168 3.832 15 H 0.106 0.894 16 O -0.549 6.549 17 C -0.113 4.113 18 C -0.053 4.053 19 C -0.099 4.099 20 C -0.056 4.056 21 C -0.062 4.062 22 N 0.031 4.969 23 O -0.197 6.197 24 O -0.165 6.165 25 C -0.054 4.054 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.059 0.941 31 H -0.024 1.024 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.384 0.616 37 H 0.169 0.831 38 H 0.188 0.812 39 H 0.170 0.830 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 2.737 18.445 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.070 4.070 3 N -0.253 5.253 4 C 0.080 3.920 5 C -0.554 4.554 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.787 3.213 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.105 4.105 14 C 0.108 3.892 15 H 0.123 0.877 16 O -0.356 6.356 17 C -0.114 4.114 18 C -0.070 4.070 19 C -0.117 4.117 20 C -0.075 4.075 21 C -0.145 4.145 22 N 0.545 4.455 23 O -0.405 6.405 24 O -0.383 6.383 25 C -0.074 4.074 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.078 0.922 31 H -0.006 1.006 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.234 0.766 37 H 0.186 0.814 38 H 0.206 0.794 39 H 0.187 0.813 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.562 2.493 17.852 18.374 hybrid contribution -1.370 0.055 -0.808 1.591 sum 2.193 2.548 17.044 17.372 Atomic orbital electron populations 1.22296 0.98631 1.02260 1.00820 1.22027 0.92646 0.90565 1.01738 1.62139 1.59370 1.02376 1.01438 1.19433 0.92434 0.92572 0.87600 1.21446 1.26546 1.16007 0.91441 0.92312 1.25797 0.95781 0.95510 1.02322 1.70062 1.36668 1.25650 1.25109 0.85501 0.79068 0.77997 0.78780 1.20153 1.20893 1.19067 1.22853 0.97487 0.99122 0.91064 1.20605 0.82048 0.99253 0.87266 0.87660 1.86654 1.24826 1.30856 1.93246 1.20625 0.98116 0.96005 0.96701 1.21866 0.95196 0.92673 0.97315 1.21633 0.95941 1.02160 0.91967 1.21451 0.94200 0.90188 1.01615 1.21268 1.04167 0.96118 0.92962 1.43956 0.99402 1.00752 1.01350 1.94550 1.59632 1.03611 1.82747 1.94492 1.59161 1.69408 1.15216 1.20916 0.94664 1.01411 0.90373 0.90995 0.92480 0.94678 0.90110 0.92227 1.00627 0.97905 0.92856 0.90950 0.93965 0.76641 0.81388 0.79429 0.81285 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.14 9.28 71.98 0.67 -5.47 16 2 C 0.06 2.09 5.75 86.30 0.50 2.59 16 3 N -0.53 -20.75 4.53 -900.81 -4.08 -24.83 16 4 C 0.21 10.24 4.45 85.56 0.38 10.62 16 5 C -0.52 -28.23 8.52 25.60 0.22 -28.02 16 6 H 0.06 3.21 7.10 -2.91 -0.02 3.18 16 7 C 0.00 0.21 5.46 84.66 0.46 0.67 16 8 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 9 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.02 0.70 4.51 86.30 0.39 1.09 16 14 C 0.17 3.96 3.28 29.85 0.10 4.05 16 15 H 0.11 2.56 6.66 -2.38 -0.02 2.54 16 16 O -0.55 -13.69 13.08 -148.98 -1.95 -15.64 16 17 C -0.11 -2.09 4.97 -19.86 -0.10 -2.19 16 18 C -0.05 -0.67 9.32 22.27 0.21 -0.47 16 19 C -0.10 -0.97 10.05 22.27 0.22 -0.74 16 20 C -0.06 -0.79 9.56 22.27 0.21 -0.58 16 21 C -0.06 -1.28 6.85 36.38 0.25 -1.03 16 22 N 0.03 0.80 4.45 -46.46 -0.21 0.59 16 23 O -0.20 -5.66 18.45 18.90 0.35 -5.32 16 24 O -0.17 -4.28 18.45 18.88 0.35 -3.94 16 25 C -0.05 -1.11 9.18 22.27 0.20 -0.90 16 26 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.06 1.74 6.23 -2.39 -0.01 1.73 16 28 H 0.03 1.43 6.27 -2.39 -0.01 1.42 16 29 H 0.08 2.41 6.72 -2.39 -0.02 2.40 16 30 H 0.06 2.40 6.87 -2.39 -0.02 2.39 16 31 H -0.02 -1.28 5.99 -2.38 -0.01 -1.30 16 32 H 0.00 0.15 7.83 -2.39 -0.02 0.14 16 33 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.07 2.12 7.74 -2.39 -0.02 2.11 16 35 H 0.04 1.26 5.85 -2.38 -0.01 1.25 16 36 H 0.38 6.84 7.50 -74.06 -0.56 6.28 16 37 H 0.17 1.32 6.78 -2.91 -0.02 1.30 16 38 H 0.19 0.42 8.06 -2.91 -0.02 0.40 16 39 H 0.17 1.80 7.61 -2.91 -0.02 1.77 16 40 H 0.15 3.06 7.59 -2.91 -0.02 3.04 16 Total: -1.00 -69.19 335.53 1.01 -68.18 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.52 Total: 10.12 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 3.71 Total: -20.38 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -4.00 Total: -78.64 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.25 Total: -24.89 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -69.19 1.01 -68.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269664985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.773 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds