Wall clock time and date at job start Tue Mar 31 2020 07:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.52998 * 109.47235 * 170.00559 * 14 12 2 16 16 H 1.08999 * 109.47748 * 59.99629 * 15 14 12 17 17 O 1.42908 * 109.46828 * 299.99657 * 15 14 12 18 18 C 1.50700 * 109.47247 * 180.02562 * 15 14 12 19 19 C 1.38262 * 120.00134 * 84.99555 * 18 15 14 20 20 C 1.38217 * 119.99702 * 180.02562 * 19 18 15 21 21 C 1.38249 * 120.00204 * 359.95401 * 20 19 18 22 22 C 1.38220 * 120.00210 * 0.02562 * 21 20 19 23 23 N 1.48016 * 120.00203 * 180.02562 * 22 21 20 24 24 O 1.21801 * 119.99815 * 359.97438 * 23 22 21 25 25 O 1.21794 * 120.00413 * 180.02562 * 23 22 21 26 26 C 1.38215 * 119.99761 * 264.72477 * 18 15 14 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 32 32 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 33 33 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 34 34 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 35 35 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 36 36 H 0.96700 * 114.00012 * 300.00284 * 17 15 14 37 37 H 1.07991 * 119.99881 * 359.97438 * 19 18 15 38 38 H 1.08002 * 119.99458 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.00233 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.00101 * 359.97438 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4885 -0.5257 -3.5972 16 1 2.1390 -1.5474 -3.7459 17 8 3.8934 -0.5362 -3.3354 18 6 2.2154 0.2848 -4.8380 19 6 2.9827 1.4003 -5.1179 20 6 2.7318 2.1439 -6.2556 21 6 1.7143 1.7717 -7.1143 22 6 0.9475 0.6562 -6.8348 23 7 -0.1415 0.2573 -7.7544 24 8 -0.3623 0.9123 -8.7573 25 8 -0.8176 -0.7254 -7.5079 26 6 1.2015 -0.0904 -5.6992 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7082 1.1610 3.4844 31 1 0.3491 -1.9549 -1.3693 32 1 1.8134 -2.5258 -2.2045 33 1 1.7059 -2.6221 -0.4301 34 1 0.6815 0.1053 -2.6087 35 1 2.1026 1.1189 -2.2604 36 1 4.2734 0.3414 -3.1927 37 1 3.7775 1.6911 -4.4470 38 1 3.3310 3.0156 -6.4740 39 1 1.5185 2.3525 -8.0036 40 1 0.6053 -0.9645 -5.4831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269679021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:43 Heat of formation + Delta-G solvation = -16.538497 kcal Electronic energy + Delta-G solvation = -23549.740794 eV Core-core repulsion = 19947.297186 eV Total energy + Delta-G solvation = -3602.443608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.36067 -40.19096 -37.92418 -36.73853 -36.16793 -32.87916 -32.26932 -32.13760 -29.37084 -27.67124 -26.79758 -25.45615 -25.28912 -23.19380 -22.73715 -21.34178 -19.42156 -19.19383 -18.82192 -17.70147 -17.17391 -16.48112 -16.20584 -16.09801 -15.39774 -14.72364 -14.63852 -14.32027 -14.15227 -13.45725 -13.19894 -13.15446 -12.64569 -12.48582 -12.30983 -11.74463 -11.69573 -11.46270 -11.36528 -11.31083 -11.15083 -10.95522 -10.90194 -10.68909 -10.51757 -10.29435 -10.10637 -9.93156 -9.87055 -9.38448 -8.93753 -8.44731 -7.24787 -6.06833 -4.10418 -0.39167 0.58549 1.12480 1.19388 2.93800 3.26649 3.34911 3.39699 3.92683 4.10958 4.30918 4.38521 4.41171 4.53849 4.66421 4.72956 5.08248 5.11309 5.24877 5.25624 5.32663 5.41275 5.60006 5.68942 5.90018 5.93488 6.06918 6.14142 6.23537 6.29820 6.56774 6.72220 6.80997 7.01400 7.33460 7.45273 7.61194 7.65885 7.77654 8.02846 8.27967 8.49705 8.96150 9.55091 11.00365 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026977 B = 0.003247 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.660364 B = 8620.538325 C = 8926.876493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.211 3.789 3 H 0.037 0.963 4 C -0.497 4.497 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.522 5.522 13 C 0.030 3.970 14 C 0.028 3.972 15 C 0.150 3.850 16 H 0.112 0.888 17 O -0.534 6.534 18 C -0.104 4.104 19 C -0.059 4.059 20 C -0.113 4.113 21 C -0.062 4.062 22 C -0.043 4.043 23 N 0.029 4.971 24 O -0.164 6.164 25 O -0.159 6.159 26 C -0.047 4.047 27 H 0.033 0.967 28 H 0.004 0.996 29 H 0.089 0.911 30 H 0.260 0.740 31 H 0.019 0.981 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.371 0.629 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 2.668 -17.107 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.245 5.245 13 C -0.118 4.118 14 C -0.101 4.101 15 C 0.090 3.910 16 H 0.130 0.870 17 O -0.338 6.338 18 C -0.105 4.105 19 C -0.077 4.077 20 C -0.131 4.131 21 C -0.081 4.081 22 C -0.125 4.125 23 N 0.548 4.452 24 O -0.379 6.379 25 O -0.375 6.375 26 C -0.067 4.067 27 H 0.052 0.948 28 H 0.023 0.977 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.218 0.782 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.068 2.274 -16.530 17.175 hybrid contribution -1.040 0.299 0.575 1.225 sum 3.027 2.573 -15.955 16.443 Atomic orbital electron populations 1.22424 1.00859 0.99541 1.00447 1.19336 0.89716 0.94379 0.86059 0.94526 1.21132 1.30447 1.12525 0.89479 0.91784 1.24934 0.95217 0.95140 0.99071 1.69888 1.37120 1.23161 1.23360 0.86455 0.78541 0.79702 0.82815 1.19676 1.21071 1.21181 1.62309 1.58647 1.02199 1.01383 1.22305 0.96352 0.91941 1.01214 1.22697 0.97673 0.98146 0.91633 1.20969 0.83003 0.98790 0.88242 0.87045 1.86678 1.20083 1.33845 1.93204 1.20894 0.95018 0.96894 0.97727 1.21465 0.97632 0.92432 0.96207 1.21198 0.97258 1.00715 0.93957 1.21066 0.93065 0.93560 1.00384 1.21103 0.94862 1.01645 0.94931 1.43638 1.00970 0.99706 1.00838 1.94523 1.74110 1.52838 1.16456 1.94559 1.46608 1.16782 1.79568 1.20903 0.96330 0.98993 0.90430 0.94802 0.97681 0.89264 0.93045 0.96249 0.93807 0.90678 0.94656 0.91018 0.78159 0.83800 0.83351 0.83022 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.22 37.16 0.31 -3.73 16 2 C 0.21 5.03 2.31 -68.87 -0.16 4.87 16 3 H 0.04 0.96 7.93 -51.93 -0.41 0.54 16 4 C -0.50 -13.15 7.97 -34.44 -0.27 -13.43 16 5 H 0.06 1.72 7.10 -52.48 -0.37 1.35 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 N -0.52 -10.30 4.57 -236.29 -1.08 -11.38 16 13 C 0.03 0.56 8.62 60.06 0.52 1.08 16 14 C 0.03 0.43 4.17 -3.82 -0.02 0.42 16 15 C 0.15 1.88 3.09 -27.88 -0.09 1.79 16 16 H 0.11 1.43 6.38 -51.93 -0.33 1.10 16 17 O -0.53 -7.01 13.00 -35.23 -0.46 -7.47 16 18 C -0.10 -1.07 5.00 -104.62 -0.52 -1.60 16 19 C -0.06 -0.48 9.33 -39.58 -0.37 -0.85 16 20 C -0.11 -0.79 10.05 -39.59 -0.40 -1.19 16 21 C -0.06 -0.54 9.56 -39.58 -0.38 -0.91 16 22 C -0.04 -0.48 6.85 -79.95 -0.55 -1.02 16 23 N 0.03 0.39 4.45 33.96 0.15 0.54 16 24 O -0.16 -2.21 18.45 -29.46 -0.54 -2.75 16 25 O -0.16 -2.27 18.45 -29.46 -0.54 -2.81 16 26 C -0.05 -0.52 9.19 -39.58 -0.36 -0.88 16 27 H 0.03 0.76 6.33 -51.93 -0.33 0.44 16 28 H 0.00 0.09 6.91 -51.93 -0.36 -0.27 16 29 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 31 H 0.02 0.35 6.21 -51.93 -0.32 0.03 16 32 H 0.04 0.69 6.30 -51.93 -0.33 0.36 16 33 H 0.07 1.51 6.86 -51.93 -0.36 1.16 16 34 H 0.04 0.57 7.06 -51.93 -0.37 0.20 16 35 H 0.07 1.10 7.93 -51.93 -0.41 0.68 16 36 H 0.37 3.63 7.39 45.56 0.34 3.97 16 37 H 0.14 0.85 6.61 -52.49 -0.35 0.50 16 38 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.15 1.07 7.61 -52.48 -0.40 0.67 16 40 H 0.15 1.61 7.61 -52.49 -0.40 1.21 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -30.38 331.43 -8.53 -38.91 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.27 Total: 2.32 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.39 Total: -14.02 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.30 Total: -35.06 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -1.55 Total: -13.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.38 -8.53 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269679021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.369 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds