Wall clock time and date at job start Tue Mar 31 2020 07:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.52998 * 109.47235 * 170.00559 * 14 12 2 16 16 H 1.08999 * 109.47748 * 59.99629 * 15 14 12 17 17 O 1.42908 * 109.46828 * 299.99657 * 15 14 12 18 18 C 1.50700 * 109.47247 * 180.02562 * 15 14 12 19 19 C 1.38262 * 120.00134 * 84.99555 * 18 15 14 20 20 C 1.38217 * 119.99702 * 180.02562 * 19 18 15 21 21 C 1.38249 * 120.00204 * 359.95401 * 20 19 18 22 22 C 1.38220 * 120.00210 * 0.02562 * 21 20 19 23 23 N 1.48016 * 120.00203 * 180.02562 * 22 21 20 24 24 O 1.21801 * 119.99815 * 359.97438 * 23 22 21 25 25 O 1.21794 * 120.00413 * 180.02562 * 23 22 21 26 26 C 1.38215 * 119.99761 * 264.72477 * 18 15 14 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 32 32 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 33 33 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 34 34 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 35 35 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 36 36 H 0.96700 * 114.00012 * 300.00284 * 17 15 14 37 37 H 1.07991 * 119.99881 * 359.97438 * 19 18 15 38 38 H 1.08002 * 119.99458 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.00233 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.00101 * 359.97438 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4885 -0.5257 -3.5972 16 1 2.1390 -1.5474 -3.7459 17 8 3.8934 -0.5362 -3.3354 18 6 2.2154 0.2848 -4.8380 19 6 2.9827 1.4003 -5.1179 20 6 2.7318 2.1439 -6.2556 21 6 1.7143 1.7717 -7.1143 22 6 0.9475 0.6562 -6.8348 23 7 -0.1415 0.2573 -7.7544 24 8 -0.3623 0.9123 -8.7573 25 8 -0.8176 -0.7254 -7.5079 26 6 1.2015 -0.0904 -5.6992 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7082 1.1610 3.4844 31 1 0.3491 -1.9549 -1.3693 32 1 1.8134 -2.5258 -2.2045 33 1 1.7059 -2.6221 -0.4301 34 1 0.6815 0.1053 -2.6087 35 1 2.1026 1.1189 -2.2604 36 1 4.2734 0.3414 -3.1927 37 1 3.7775 1.6911 -4.4470 38 1 3.3310 3.0156 -6.4740 39 1 1.5185 2.3525 -8.0036 40 1 0.6053 -0.9645 -5.4831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269679021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:43 Heat of formation + Delta-G solvation = -36.540104 kcal Electronic energy + Delta-G solvation = -23550.608129 eV Core-core repulsion = 19947.297186 eV Total energy + Delta-G solvation = -3603.310942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31143 -41.03931 -39.21401 -37.74384 -37.44888 -34.70533 -33.19271 -32.90917 -30.99407 -29.04670 -27.68154 -27.28953 -26.80796 -24.23969 -23.70502 -22.40483 -21.05048 -20.13330 -19.80047 -18.66730 -18.29523 -17.91612 -17.21039 -17.19530 -16.92077 -16.12747 -15.72300 -15.63880 -15.12525 -14.69509 -14.60014 -14.34906 -14.12685 -13.49302 -13.27814 -13.14495 -12.93522 -12.86425 -12.75234 -12.63533 -12.50413 -12.36270 -12.32704 -12.26832 -12.09455 -12.05932 -11.79409 -11.15316 -10.89711 -10.60463 -10.49540 -10.20284 -8.84084 -8.11007 -6.20909 -1.28136 -0.12252 0.26332 0.32363 1.41320 1.44288 1.55390 2.21909 2.43334 3.02799 3.18805 3.33150 3.44122 3.68914 3.74964 3.82380 3.91905 3.95669 4.16442 4.22238 4.52904 4.56299 4.62276 4.66343 4.75977 4.78543 4.82877 4.87866 4.96549 5.06252 5.12741 5.17928 5.23853 5.45738 5.51436 5.70378 5.78648 6.19844 6.42134 6.45403 6.69559 6.84489 6.92841 7.48560 8.95059 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026977 B = 0.003247 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.660364 B = 8620.538325 C = 8926.876493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.216 3.784 3 H 0.011 0.989 4 C -0.510 4.510 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.530 5.530 13 C 0.034 3.966 14 C 0.029 3.971 15 C 0.166 3.834 16 H 0.106 0.894 17 O -0.547 6.547 18 C -0.113 4.113 19 C -0.051 4.051 20 C -0.098 4.098 21 C -0.056 4.056 22 C -0.062 4.062 23 N 0.031 4.969 24 O -0.162 6.162 25 O -0.200 6.200 26 C -0.057 4.057 27 H 0.032 0.968 28 H 0.022 0.978 29 H 0.060 0.940 30 H 0.260 0.740 31 H 0.018 0.982 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.385 0.615 37 H 0.171 0.829 38 H 0.190 0.810 39 H 0.170 0.830 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 3.593 -18.055 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.029 0.971 4 C -0.549 4.549 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.253 5.253 13 C -0.114 4.114 14 C -0.099 4.099 15 C 0.106 3.894 16 H 0.124 0.876 17 O -0.354 6.354 18 C -0.115 4.115 19 C -0.069 4.069 20 C -0.116 4.116 21 C -0.075 4.075 22 C -0.145 4.145 23 N 0.545 4.455 24 O -0.381 6.381 25 O -0.408 6.408 26 C -0.076 4.076 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.188 0.812 38 H 0.207 0.793 39 H 0.187 0.813 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.654 3.146 -17.474 18.634 hybrid contribution -1.457 0.116 0.803 1.668 sum 4.197 3.262 -16.671 17.498 Atomic orbital electron populations 1.22230 1.00664 0.99203 0.99851 1.19072 0.89688 0.93026 0.87303 0.97140 1.21397 1.30268 1.12342 0.90884 0.92670 1.25647 0.95465 0.95815 1.01737 1.70005 1.37998 1.24259 1.23882 0.85533 0.78008 0.78710 0.79529 1.19320 1.20695 1.20943 1.62175 1.58692 1.02785 1.01676 1.22270 0.96306 0.91283 1.01546 1.22774 0.97995 0.98097 0.91073 1.20640 0.82408 0.98638 0.87759 0.87606 1.86652 1.20107 1.35395 1.93268 1.20627 0.95929 0.97947 0.96963 1.21870 0.97196 0.91071 0.96769 1.21646 0.96348 1.01174 0.92472 1.21463 0.92494 0.92380 1.01140 1.21270 0.95117 1.03150 0.94991 1.43964 1.01245 0.99319 1.00959 1.94486 1.74191 1.52502 1.16917 1.94555 1.48128 1.17902 1.80212 1.20899 0.96706 0.99161 0.90823 0.94893 0.95879 0.92115 0.93052 0.96387 0.90977 0.92804 0.95105 0.90679 0.76480 0.81150 0.79307 0.81253 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.51 8.22 71.98 0.59 -6.92 16 2 C 0.22 10.39 2.31 44.17 0.10 10.49 16 3 H 0.01 0.56 7.93 -2.39 -0.02 0.55 16 4 C -0.51 -27.26 7.97 25.60 0.20 -27.06 16 5 H 0.06 2.99 7.10 -2.91 -0.02 2.97 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -51.71 11.32 21.45 0.24 -51.47 16 8 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.53 -20.69 4.57 -901.48 -4.12 -24.81 16 13 C 0.03 1.25 8.62 127.69 1.10 2.35 16 14 C 0.03 0.89 4.17 86.30 0.36 1.25 16 15 C 0.17 3.87 3.09 29.85 0.09 3.97 16 16 H 0.11 2.58 6.38 -2.39 -0.02 2.56 16 17 O -0.55 -13.14 13.00 -148.98 -1.94 -15.08 16 18 C -0.11 -2.10 5.00 -19.86 -0.10 -2.20 16 19 C -0.05 -0.64 9.33 22.27 0.21 -0.43 16 20 C -0.10 -0.94 10.05 22.27 0.22 -0.71 16 21 C -0.06 -0.79 9.56 22.27 0.21 -0.58 16 22 C -0.06 -1.31 6.85 36.38 0.25 -1.06 16 23 N 0.03 0.81 4.45 -46.46 -0.21 0.60 16 24 O -0.16 -4.26 18.45 18.89 0.35 -3.92 16 25 O -0.20 -5.92 18.45 18.89 0.35 -5.57 16 26 C -0.06 -1.18 9.19 22.27 0.20 -0.98 16 27 H 0.03 1.50 6.33 -2.39 -0.02 1.49 16 28 H 0.02 0.95 6.91 -2.39 -0.02 0.93 16 29 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 30 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 31 H 0.02 0.65 6.21 -2.39 -0.01 0.63 16 32 H 0.07 2.20 6.30 -2.38 -0.02 2.18 16 33 H 0.05 2.17 6.86 -2.39 -0.02 2.15 16 34 H 0.03 0.97 7.06 -2.39 -0.02 0.95 16 35 H 0.07 2.19 7.93 -2.39 -0.02 2.17 16 36 H 0.39 6.44 7.39 -74.06 -0.55 5.89 16 37 H 0.17 1.20 6.61 -2.92 -0.02 1.18 16 38 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 39 H 0.17 1.80 7.61 -2.91 -0.02 1.78 16 40 H 0.15 3.15 7.61 -2.91 -0.02 3.13 16 Total: -1.00 -66.61 331.43 1.13 -65.48 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.53 Total: 10.54 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 3.90 Total: -20.82 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -4.08 Total: -75.68 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.24 Total: -24.57 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -66.61 1.13 -65.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269679021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.939 kcal (2) G-P(sol) polarization free energy of solvation -66.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds