Wall clock time and date at job start Tue Mar 31 2020 07:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47396 * 2 1 4 4 C 1.50700 * 109.46990 * 120.00711 * 2 1 3 5 5 H 1.07997 * 120.00610 * 119.99766 * 4 2 1 6 6 C 1.37882 * 119.99794 * 299.99407 * 4 2 1 7 7 N 1.31507 * 120.00302 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99868 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47557 * 89.99603 * 8 6 4 10 10 H 1.48501 * 109.47080 * 209.99568 * 8 6 4 11 11 H 1.48502 * 109.47249 * 329.99420 * 8 6 4 12 12 N 1.46906 * 109.47036 * 240.00398 * 2 1 3 13 13 C 1.46901 * 110.99793 * 183.95785 * 12 2 1 14 14 C 1.46898 * 110.99820 * 60.00102 * 12 2 1 15 15 C 1.53004 * 109.46619 * 189.99887 * 14 12 2 16 16 H 1.08992 * 109.47535 * 304.99943 * 15 14 12 17 17 O 1.42897 * 109.47256 * 65.00537 * 15 14 12 18 18 C 1.50705 * 109.46736 * 185.00158 * 15 14 12 19 19 C 1.38260 * 119.99942 * 279.72711 * 18 15 14 20 20 C 1.38212 * 119.99769 * 179.77144 * 19 18 15 21 21 C 1.38255 * 119.99860 * 0.50210 * 20 19 18 22 22 C 1.38209 * 120.00186 * 359.75038 * 21 20 19 23 23 N 1.48023 * 119.99804 * 179.97438 * 22 21 20 24 24 O 1.21807 * 119.99726 * 180.02562 * 23 22 21 25 25 O 1.21800 * 120.00232 * 0.02656 * 23 22 21 26 26 C 1.38208 * 119.99930 * 100.00273 * 18 15 14 27 27 H 1.09006 * 109.46931 * 59.99390 * 1 2 3 28 28 H 1.08992 * 109.47626 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47248 * 300.00196 * 1 2 3 30 30 H 0.97003 * 120.00699 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 32 32 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 33 33 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 34 34 H 1.08994 * 109.47410 * 309.99936 * 14 12 2 35 35 H 1.08999 * 109.47216 * 70.00266 * 14 12 2 36 36 H 0.96701 * 114.00549 * 59.99438 * 17 15 14 37 37 H 1.08000 * 120.00128 * 0.02562 * 19 18 15 38 38 H 1.08001 * 119.99771 * 180.23283 * 20 19 18 39 39 H 1.08009 * 119.99994 * 179.73146 * 21 20 19 40 40 H 1.08004 * 120.00517 * 0.02562 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1371 -0.8598 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9949 3.9069 11 1 0.8473 2.1765 1.4922 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5486 -0.0262 -2.4211 15 6 1.8627 -0.9041 -3.6342 16 1 2.9275 -1.1363 -3.6488 17 8 1.1117 -2.1170 -3.5516 18 6 1.4916 -0.1685 -4.8961 19 6 0.1740 -0.1325 -5.3132 20 6 -0.1670 0.5461 -6.4680 21 6 0.8111 1.1802 -7.2115 22 6 2.1290 1.1398 -6.7973 23 7 3.1762 1.8182 -7.5936 24 8 4.3378 1.7822 -7.2288 25 8 2.8764 2.4124 -8.6137 26 6 2.4694 0.4653 -5.6394 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.9025 -0.5287 4.4375 31 1 3.8029 -1.3532 -0.3067 32 1 3.9187 0.2051 -1.1591 33 1 3.8209 -1.3117 -2.0860 34 1 0.4723 0.1326 -2.3564 35 1 2.0519 0.9347 -2.5280 36 1 0.1538 -1.9862 -3.5344 37 1 -0.5895 -0.6312 -4.7346 38 1 -1.1968 0.5774 -6.7918 39 1 0.5453 1.7068 -8.1162 40 1 3.4994 0.4332 -5.3161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269679023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:46 Heat of formation + Delta-G solvation = -6.913420 kcal Electronic energy + Delta-G solvation = -23614.187326 eV Core-core repulsion = 20012.161093 eV Total energy + Delta-G solvation = -3602.026233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.41053 -40.27032 -38.01992 -36.78648 -36.22030 -32.89369 -32.34113 -32.18943 -30.38350 -28.41558 -26.86133 -25.68794 -24.52662 -23.24264 -22.81858 -21.38427 -19.67056 -19.24445 -18.87142 -17.75000 -17.26790 -16.93797 -16.43328 -16.23554 -15.57292 -14.78654 -14.71445 -14.50142 -14.05144 -13.80519 -13.40704 -13.02605 -12.80295 -12.66247 -12.48053 -12.31899 -11.88617 -11.79140 -11.49009 -11.41663 -11.35706 -11.16506 -10.97432 -10.71804 -10.56776 -10.24880 -10.16573 -9.97766 -9.62378 -9.45239 -9.10499 -8.64220 -7.48392 -6.13956 -4.13256 -0.45359 0.51243 1.06204 1.13656 2.86490 3.18649 3.28011 3.31600 3.83958 4.03981 4.25069 4.31435 4.31778 4.45780 4.55662 4.63206 4.89653 5.00895 5.15002 5.16265 5.23111 5.33465 5.50129 5.58955 5.76699 5.81891 5.89877 6.04443 6.16605 6.17567 6.23477 6.33252 6.45732 6.65463 6.82236 7.14609 7.39994 7.45727 7.56333 7.79644 7.94968 8.55618 8.92892 9.47141 10.98715 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.003459 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.394830 B = 8093.177607 C = 8245.556641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.182 3.818 3 H -0.003 1.003 4 C -0.507 4.507 5 H 0.085 0.915 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.271 1.271 12 N -0.515 5.515 13 C 0.033 3.967 14 C 0.020 3.980 15 C 0.151 3.849 16 H 0.115 0.885 17 O -0.532 6.532 18 C -0.105 4.105 19 C -0.060 4.060 20 C -0.113 4.113 21 C -0.061 4.061 22 C -0.042 4.042 23 N 0.029 4.971 24 O -0.158 6.158 25 O -0.163 6.163 26 C -0.046 4.046 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.086 0.914 32 H 0.014 0.986 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.370 0.630 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 3.019 -20.283 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.075 3.925 3 H 0.014 0.986 4 C -0.545 4.545 5 H 0.103 0.897 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.239 5.239 13 C -0.116 4.116 14 C -0.109 4.109 15 C 0.091 3.909 16 H 0.132 0.868 17 O -0.337 6.337 18 C -0.107 4.107 19 C -0.078 4.078 20 C -0.131 4.131 21 C -0.080 4.080 22 C -0.125 4.125 23 N 0.548 4.452 24 O -0.374 6.374 25 O -0.379 6.379 26 C -0.065 4.065 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.217 0.783 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.561 1.949 -19.673 20.537 hybrid contribution -0.590 2.241 -0.002 2.317 sum -6.151 4.190 -19.675 21.035 Atomic orbital electron populations 1.22229 0.98625 1.01399 0.98097 1.19709 0.91416 0.92567 0.88819 0.98579 1.20964 1.32135 1.13670 0.87774 0.89744 1.24921 0.95807 0.96547 0.95822 1.69867 1.45545 1.40180 0.97917 0.86896 0.80791 0.83813 0.76883 1.20505 1.22381 1.19618 1.61905 1.10134 1.51375 1.00499 1.22331 0.87727 0.99392 1.02108 1.22861 1.01636 0.94953 0.91473 1.20964 0.97650 0.84402 0.87926 0.86766 1.86709 1.21661 1.28990 1.96307 1.20874 0.93078 0.98453 0.98274 1.21463 0.96094 0.94950 0.95310 1.21200 0.99870 0.97314 0.94756 1.21078 0.89708 0.96853 1.00344 1.21109 0.88558 1.05945 0.96898 1.43641 1.02060 0.98996 1.00497 1.94566 1.03299 1.65413 1.74143 1.94526 1.87710 1.42085 1.13534 1.20925 1.02038 0.92745 0.90832 0.95549 0.91824 0.93934 0.92527 0.89557 0.96782 0.93374 0.90187 0.94895 0.78297 0.83860 0.83335 0.82979 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.47 37.16 0.31 -2.67 16 2 C 0.18 4.09 1.65 -68.86 -0.11 3.98 16 3 H 0.00 -0.08 7.20 -51.93 -0.37 -0.45 16 4 C -0.51 -13.68 8.51 -34.44 -0.29 -13.98 16 5 H 0.08 2.48 6.64 -52.49 -0.35 2.14 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 8 Si 0.89 21.30 24.37 -169.99 -4.14 17.16 16 9 H -0.28 -6.48 6.87 56.52 0.39 -6.10 16 10 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.52 -9.78 4.57 -236.28 -1.08 -10.86 16 13 C 0.03 0.59 9.05 60.07 0.54 1.14 16 14 C 0.02 0.29 4.39 -3.82 -0.02 0.27 16 15 C 0.15 1.78 3.17 -27.88 -0.09 1.69 16 16 H 0.11 1.40 6.12 -51.93 -0.32 1.08 16 17 O -0.53 -6.62 13.13 -35.23 -0.46 -7.09 16 18 C -0.11 -1.01 4.97 -104.62 -0.52 -1.53 16 19 C -0.06 -0.44 9.32 -39.58 -0.37 -0.81 16 20 C -0.11 -0.72 10.05 -39.58 -0.40 -1.11 16 21 C -0.06 -0.49 9.56 -39.59 -0.38 -0.87 16 22 C -0.04 -0.45 6.85 -79.95 -0.55 -1.00 16 23 N 0.03 0.37 4.45 33.96 0.15 0.52 16 24 O -0.16 -2.18 18.45 -29.46 -0.54 -2.72 16 25 O -0.16 -2.13 18.45 -29.46 -0.54 -2.67 16 26 C -0.05 -0.48 9.18 -39.59 -0.36 -0.84 16 27 H 0.03 0.44 6.20 -51.93 -0.32 0.12 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.04 0.92 3.27 -51.93 -0.17 0.75 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.09 1.79 6.23 -51.93 -0.32 1.46 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.73 6.21 -51.93 -0.32 0.41 16 34 H 0.08 1.08 5.83 -51.93 -0.30 0.78 16 35 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 36 H 0.37 3.26 7.50 45.56 0.34 3.60 16 37 H 0.14 0.72 6.78 -52.49 -0.36 0.36 16 38 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.15 1.00 7.61 -52.48 -0.40 0.60 16 40 H 0.15 1.52 7.59 -52.48 -0.40 1.12 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -32.04 326.46 -7.42 -39.46 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.16 Total: 1.11 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.33 Total: -13.85 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.16 Total: -36.32 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -1.55 Total: -12.48 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.04 -7.42 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269679023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.542 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds