Wall clock time and date at job start Tue Mar 31 2020 07:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47396 * 2 1 4 4 C 1.50700 * 109.46990 * 120.00711 * 2 1 3 5 5 H 1.07997 * 120.00610 * 119.99766 * 4 2 1 6 6 C 1.37882 * 119.99794 * 299.99407 * 4 2 1 7 7 N 1.31507 * 120.00302 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99868 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47557 * 89.99603 * 8 6 4 10 10 H 1.48501 * 109.47080 * 209.99568 * 8 6 4 11 11 H 1.48502 * 109.47249 * 329.99420 * 8 6 4 12 12 N 1.46906 * 109.47036 * 240.00398 * 2 1 3 13 13 C 1.46901 * 110.99793 * 183.95785 * 12 2 1 14 14 C 1.46898 * 110.99820 * 60.00102 * 12 2 1 15 15 C 1.53004 * 109.46619 * 189.99887 * 14 12 2 16 16 H 1.08992 * 109.47535 * 304.99943 * 15 14 12 17 17 O 1.42897 * 109.47256 * 65.00537 * 15 14 12 18 18 C 1.50705 * 109.46736 * 185.00158 * 15 14 12 19 19 C 1.38260 * 119.99942 * 279.72711 * 18 15 14 20 20 C 1.38212 * 119.99769 * 179.77144 * 19 18 15 21 21 C 1.38255 * 119.99860 * 0.50210 * 20 19 18 22 22 C 1.38209 * 120.00186 * 359.75038 * 21 20 19 23 23 N 1.48023 * 119.99804 * 179.97438 * 22 21 20 24 24 O 1.21807 * 119.99726 * 180.02562 * 23 22 21 25 25 O 1.21800 * 120.00232 * 0.02656 * 23 22 21 26 26 C 1.38208 * 119.99930 * 100.00273 * 18 15 14 27 27 H 1.09006 * 109.46931 * 59.99390 * 1 2 3 28 28 H 1.08992 * 109.47626 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47248 * 300.00196 * 1 2 3 30 30 H 0.97003 * 120.00699 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 32 32 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 33 33 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 34 34 H 1.08994 * 109.47410 * 309.99936 * 14 12 2 35 35 H 1.08999 * 109.47216 * 70.00266 * 14 12 2 36 36 H 0.96701 * 114.00549 * 59.99438 * 17 15 14 37 37 H 1.08000 * 120.00128 * 0.02562 * 19 18 15 38 38 H 1.08001 * 119.99771 * 180.23283 * 20 19 18 39 39 H 1.08009 * 119.99994 * 179.73146 * 21 20 19 40 40 H 1.08004 * 120.00517 * 0.02562 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1371 -0.8598 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9949 3.9069 11 1 0.8473 2.1765 1.4922 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5486 -0.0262 -2.4211 15 6 1.8627 -0.9041 -3.6342 16 1 2.9275 -1.1363 -3.6488 17 8 1.1117 -2.1170 -3.5516 18 6 1.4916 -0.1685 -4.8961 19 6 0.1740 -0.1325 -5.3132 20 6 -0.1670 0.5461 -6.4680 21 6 0.8111 1.1802 -7.2115 22 6 2.1290 1.1398 -6.7973 23 7 3.1762 1.8182 -7.5936 24 8 4.3378 1.7822 -7.2288 25 8 2.8764 2.4124 -8.6137 26 6 2.4694 0.4653 -5.6394 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.9025 -0.5287 4.4375 31 1 3.8029 -1.3532 -0.3067 32 1 3.9187 0.2051 -1.1591 33 1 3.8209 -1.3117 -2.0860 34 1 0.4723 0.1326 -2.3564 35 1 2.0519 0.9347 -2.5280 36 1 0.1538 -1.9862 -3.5344 37 1 -0.5895 -0.6312 -4.7346 38 1 -1.1968 0.5774 -6.7918 39 1 0.5453 1.7068 -8.1162 40 1 3.4994 0.4332 -5.3161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269679023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:45 Heat of formation + Delta-G solvation = -30.538559 kcal Electronic energy + Delta-G solvation = -23615.211789 eV Core-core repulsion = 20012.161093 eV Total energy + Delta-G solvation = -3603.050696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.30862 -41.05021 -39.22082 -37.74326 -37.43011 -34.72202 -33.23720 -32.91910 -32.04072 -29.62098 -27.68592 -27.25114 -26.11696 -24.21711 -23.72294 -22.38283 -21.25457 -20.11693 -19.79856 -18.92017 -18.66316 -17.92355 -17.45678 -17.17644 -16.89158 -16.08901 -15.97144 -15.43646 -15.19411 -15.00396 -14.78721 -14.21716 -14.19591 -14.09772 -13.50063 -13.27504 -13.18028 -12.77497 -12.73958 -12.67109 -12.53810 -12.44020 -12.36604 -12.32189 -12.03865 -11.86962 -11.46096 -11.19685 -10.96096 -10.73476 -10.60415 -10.22163 -9.00854 -8.28245 -6.31798 -1.28649 -0.12471 0.26056 0.32561 1.28739 1.34408 1.44056 2.21990 2.30839 2.92743 3.06161 3.29865 3.43781 3.62819 3.72770 3.81175 3.89432 3.95072 4.14027 4.18842 4.40027 4.52483 4.55312 4.62279 4.64340 4.65289 4.77732 4.81662 4.85423 4.96331 5.02925 5.07278 5.19451 5.24387 5.43069 5.46739 5.65246 5.99808 6.30880 6.41182 6.66927 6.75874 6.86127 7.33027 8.88215 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.003459 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.394830 B = 8093.177607 C = 8245.556641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.183 3.817 3 H -0.014 1.014 4 C -0.508 4.508 5 H 0.042 0.958 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.950 3.050 9 H -0.261 1.261 10 H -0.302 1.302 11 H -0.253 1.253 12 N -0.526 5.526 13 C 0.036 3.964 14 C 0.021 3.979 15 C 0.164 3.836 16 H 0.102 0.898 17 O -0.548 6.548 18 C -0.113 4.113 19 C -0.049 4.049 20 C -0.098 4.098 21 C -0.056 4.056 22 C -0.063 4.063 23 N 0.030 4.970 24 O -0.202 6.202 25 O -0.162 6.162 26 C -0.057 4.057 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.013 0.987 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.033 0.967 36 H 0.386 0.614 37 H 0.175 0.825 38 H 0.191 0.809 39 H 0.169 0.831 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 4.094 -22.554 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.075 3.925 3 H 0.003 0.997 4 C -0.546 4.546 5 H 0.060 0.940 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.777 3.223 9 H -0.187 1.187 10 H -0.230 1.230 11 H -0.177 1.177 12 N -0.250 5.250 13 C -0.112 4.112 14 C -0.108 4.108 15 C 0.104 3.896 16 H 0.120 0.880 17 O -0.356 6.356 18 C -0.114 4.114 19 C -0.067 4.067 20 C -0.116 4.116 21 C -0.075 4.075 22 C -0.146 4.146 23 N 0.544 4.456 24 O -0.410 6.410 25 O -0.381 6.381 26 C -0.076 4.076 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.237 0.763 37 H 0.193 0.807 38 H 0.208 0.792 39 H 0.186 0.814 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.033 3.014 -21.956 23.932 hybrid contribution 0.470 1.805 0.613 1.963 sum -8.563 4.818 -21.343 23.496 Atomic orbital electron populations 1.22107 0.96279 1.01786 0.99676 1.19549 0.93172 0.91314 0.88449 0.99664 1.21262 1.30916 1.12361 0.90107 0.94015 1.25792 0.97490 0.99937 0.95396 1.70034 1.47846 1.42536 0.98574 0.85849 0.79526 0.79910 0.77001 1.18662 1.23021 1.17700 1.61813 1.10116 1.51845 1.01202 1.22245 0.87992 0.99131 1.01812 1.22987 1.02442 0.95141 0.90197 1.20641 0.97196 0.83949 0.87852 0.88017 1.86690 1.23240 1.29290 1.96337 1.20596 0.94162 0.99113 0.97559 1.21895 0.95449 0.93820 0.95519 1.21660 1.01191 0.95265 0.93472 1.21476 0.88705 0.96351 1.00937 1.21276 0.88789 1.07225 0.97264 1.43999 1.02368 0.98723 1.00470 1.94563 1.04515 1.67061 1.74814 1.94486 1.87654 1.42010 1.13943 1.20919 1.02133 0.93338 0.91242 0.91197 0.92122 0.94960 0.92581 0.93217 0.96834 0.90476 0.88364 0.94876 0.76348 0.80738 0.79230 0.81352 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 8.47 71.98 0.61 -4.70 16 2 C 0.18 8.05 1.65 44.17 0.07 8.12 16 3 H -0.01 -0.64 7.20 -2.39 -0.02 -0.66 16 4 C -0.51 -28.16 8.51 25.60 0.22 -27.94 16 5 H 0.04 2.61 6.64 -2.91 -0.02 2.59 16 6 C 0.01 0.62 5.45 84.66 0.46 1.08 16 7 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 8 Si 0.95 43.59 24.37 68.60 1.67 45.27 16 9 H -0.26 -11.18 6.87 99.48 0.68 -10.50 16 10 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 11 H -0.25 -10.75 6.53 99.48 0.65 -10.11 16 12 N -0.53 -19.46 4.57 -901.45 -4.12 -23.58 16 13 C 0.04 1.35 9.05 127.69 1.16 2.51 16 14 C 0.02 0.54 4.39 86.30 0.38 0.92 16 15 C 0.16 3.47 3.17 29.85 0.09 3.57 16 16 H 0.10 2.39 6.12 -2.39 -0.01 2.37 16 17 O -0.55 -12.01 13.13 -148.98 -1.96 -13.96 16 18 C -0.11 -1.83 4.97 -19.86 -0.10 -1.93 16 19 C -0.05 -0.47 9.32 22.27 0.21 -0.26 16 20 C -0.10 -0.70 10.05 22.27 0.22 -0.48 16 21 C -0.06 -0.69 9.56 22.27 0.21 -0.48 16 22 C -0.06 -1.22 6.85 36.37 0.25 -0.97 16 23 N 0.03 0.76 4.45 -46.46 -0.21 0.56 16 24 O -0.20 -5.82 18.45 18.88 0.35 -5.47 16 25 O -0.16 -4.10 18.45 18.89 0.35 -3.75 16 26 C -0.06 -1.10 9.18 22.27 0.20 -0.90 16 27 H 0.07 2.00 6.20 -2.38 -0.01 1.99 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.03 1.28 3.27 -2.39 -0.01 1.27 16 30 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.05 2.18 6.23 -2.39 -0.01 2.17 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 2.36 6.21 -2.38 -0.01 2.35 16 34 H 0.10 2.19 5.83 -2.39 -0.01 2.18 16 35 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 36 H 0.39 5.14 7.50 -74.06 -0.56 4.59 16 37 H 0.18 0.59 6.78 -2.91 -0.02 0.57 16 38 H 0.19 -0.11 8.06 -2.91 -0.02 -0.13 16 39 H 0.17 1.54 7.61 -2.91 -0.02 1.51 16 40 H 0.15 2.94 7.59 -2.91 -0.02 2.92 16 Total: -1.00 -73.60 326.46 0.82 -72.78 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.45 Total: 8.00 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 3.99 Total: -21.46 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -4.03 Total: -81.39 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -1.26 Total: -23.19 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.67 Total: 45.27 kcal Total: -73.60 0.82 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269679023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.237 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds