Wall clock time and date at job start Tue Mar 31 2020 07:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47119 * 2 1 4 4 C 1.50704 * 109.47262 * 240.00249 * 2 1 3 5 5 H 1.08001 * 119.99412 * 239.99929 * 4 2 1 6 6 C 1.37871 * 120.00052 * 59.99306 * 4 2 1 7 7 N 1.31514 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00093 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47193 * 60.00405 * 8 6 4 10 10 H 1.48501 * 109.47383 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47044 * 300.00561 * 8 6 4 12 12 N 1.46901 * 109.47210 * 120.00014 * 2 1 3 13 13 C 1.46902 * 111.00062 * 176.04966 * 12 2 1 14 14 C 1.46902 * 110.99644 * 300.00136 * 12 2 1 15 15 C 1.53006 * 109.46626 * 170.00094 * 14 12 2 16 16 H 1.09001 * 109.46801 * 59.99937 * 15 14 12 17 17 O 1.42895 * 109.47036 * 299.99568 * 15 14 12 18 18 C 1.50699 * 109.46866 * 179.97438 * 15 14 12 19 19 C 1.38257 * 120.00321 * 85.00010 * 18 15 14 20 20 C 1.38204 * 120.00397 * 180.02562 * 19 18 15 21 21 C 1.38263 * 120.00091 * 359.95577 * 20 19 18 22 22 C 1.38211 * 119.99421 * 0.02562 * 21 20 19 23 23 N 1.48019 * 119.99472 * 180.02562 * 22 21 20 24 24 O 1.21803 * 120.00508 * 359.97438 * 23 22 21 25 25 O 1.21799 * 120.00104 * 180.02562 * 23 22 21 26 26 C 1.38213 * 120.00090 * 264.72637 * 18 15 14 27 27 H 1.08996 * 109.47113 * 60.00211 * 1 2 3 28 28 H 1.08997 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47205 * 299.99700 * 1 2 3 30 30 H 0.97004 * 120.00131 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47140 * 183.95767 * 13 12 2 32 32 H 1.09002 * 109.46408 * 303.95149 * 13 12 2 33 33 H 1.09000 * 109.47025 * 63.94802 * 13 12 2 34 34 H 1.08993 * 109.47737 * 50.00226 * 14 12 2 35 35 H 1.09000 * 109.47263 * 289.99788 * 14 12 2 36 36 H 0.96695 * 114.00385 * 300.00682 * 17 15 14 37 37 H 1.07999 * 119.99576 * 359.97438 * 19 18 15 38 38 H 1.07999 * 120.00470 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.99965 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.00195 * 0.02562 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8268 -0.4199 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7945 1.1871 14 6 1.5486 -0.0263 2.4210 15 6 1.8627 -0.9043 3.6341 16 1 2.9391 -1.0630 3.6987 17 8 1.2029 -2.1641 3.4939 18 6 1.3800 -0.2207 4.8874 19 6 0.0653 -0.3641 5.2906 20 6 -0.3775 0.2633 6.4397 21 6 0.4945 1.0336 7.1866 22 6 1.8088 1.1766 6.7838 23 7 2.7425 2.0008 7.5837 24 8 2.3524 2.5534 8.5967 25 8 3.9007 2.1272 7.2285 26 6 2.2530 0.5450 5.6369 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7093 1.1617 -3.4844 31 1 3.8164 -1.3721 2.0499 32 1 3.8069 -1.2915 0.2719 33 1 3.9192 0.2045 1.2300 34 1 0.4722 0.1324 2.3564 35 1 2.0518 0.9346 2.5280 36 1 0.2403 -2.0990 3.4303 37 1 -0.6158 -0.9657 4.7071 38 1 -1.4046 0.1517 6.7544 39 1 0.1485 1.5235 8.0848 40 1 3.2810 0.6538 5.3242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269679025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:48 Heat of formation + Delta-G solvation = -36.137092 kcal Electronic energy + Delta-G solvation = -23547.576661 eV Core-core repulsion = 19944.283194 eV Total energy + Delta-G solvation = -3603.293467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31398 -41.03767 -39.11741 -37.74439 -37.34870 -34.74554 -33.18459 -32.90768 -31.23370 -29.60715 -27.68347 -27.26997 -26.01164 -24.20342 -23.70585 -22.40948 -21.23867 -20.12475 -19.80456 -18.67093 -18.44528 -17.91711 -17.36209 -17.17055 -16.83732 -15.97376 -15.90160 -15.43445 -15.20344 -14.93708 -14.52550 -14.19924 -14.10185 -13.60406 -13.26170 -13.15547 -12.95262 -12.81047 -12.76870 -12.66724 -12.60185 -12.36685 -12.32551 -12.12760 -12.05939 -11.97141 -11.76285 -11.14389 -10.86740 -10.60559 -10.51059 -10.20689 -8.93512 -8.12104 -6.23365 -1.28426 -0.12503 0.26096 0.32094 1.43127 1.43925 1.51540 2.21763 2.42001 3.01315 3.17039 3.31682 3.43847 3.67782 3.74762 3.82029 3.90822 3.95498 4.15526 4.21175 4.51153 4.56517 4.63286 4.67879 4.72566 4.78923 4.93514 4.96406 5.01753 5.06124 5.07764 5.20287 5.28350 5.45879 5.50562 5.71653 5.78995 6.26528 6.34908 6.41680 6.68958 6.84145 6.91319 7.45960 8.93492 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026511 B = 0.003246 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.897751 B = 8624.439603 C = 8912.483351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.215 3.785 3 H -0.042 1.042 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.528 5.528 13 C 0.035 3.965 14 C 0.024 3.976 15 C 0.167 3.833 16 H 0.104 0.896 17 O -0.546 6.546 18 C -0.113 4.113 19 C -0.051 4.051 20 C -0.098 4.098 21 C -0.056 4.056 22 C -0.062 4.062 23 N 0.030 4.970 24 O -0.161 6.161 25 O -0.202 6.202 26 C -0.058 4.058 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.261 0.739 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.005 0.995 34 H 0.086 0.914 35 H 0.023 0.977 36 H 0.385 0.615 37 H 0.172 0.828 38 H 0.191 0.809 39 H 0.170 0.830 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 -2.351 18.553 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 H -0.025 1.025 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.252 5.252 13 C -0.113 4.113 14 C -0.104 4.104 15 C 0.107 3.893 16 H 0.122 0.878 17 O -0.353 6.353 18 C -0.115 4.115 19 C -0.068 4.068 20 C -0.116 4.116 21 C -0.075 4.075 22 C -0.145 4.145 23 N 0.545 4.455 24 O -0.380 6.380 25 O -0.409 6.409 26 C -0.077 4.077 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.024 0.976 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.235 0.765 37 H 0.190 0.810 38 H 0.208 0.792 39 H 0.188 0.812 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.089 -3.331 18.012 19.011 hybrid contribution 0.763 1.397 -0.909 1.833 sum -4.326 -1.934 17.103 17.747 Atomic orbital electron populations 1.21650 0.96803 0.99551 0.99785 1.19070 0.93042 0.89873 0.87227 1.02457 1.21418 1.31124 1.12304 0.90995 0.92259 1.25671 0.95392 0.95738 1.01820 1.70004 1.37799 1.24132 1.24076 0.85625 0.78648 0.78802 0.78645 1.19577 1.21087 1.19908 1.62014 1.09922 1.51820 1.01491 1.22269 0.88188 0.98675 1.02178 1.22889 1.01815 0.94881 0.90830 1.20598 0.97773 0.83246 0.87731 0.87791 1.86649 1.25191 1.27710 1.95706 1.20624 0.94909 0.98463 0.97500 1.21872 0.94283 0.95067 0.95620 1.21655 1.01725 0.94796 0.93404 1.21472 0.89034 0.96059 1.00885 1.21268 0.91737 1.04116 0.97410 1.43974 1.01714 0.99377 1.00441 1.94484 1.81689 1.47285 1.14525 1.94558 1.03285 1.68122 1.74970 1.20894 1.01990 0.93510 0.91295 0.92453 0.94452 0.94686 0.92977 0.90706 0.92211 0.97635 0.89531 0.95903 0.76464 0.81034 0.79220 0.81218 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.76 71.98 0.63 -4.82 16 2 C 0.21 10.48 2.06 44.17 0.09 10.57 16 3 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 4 C -0.52 -27.94 7.88 25.60 0.20 -27.73 16 5 H 0.06 3.18 6.41 -2.91 -0.02 3.16 16 6 C 0.01 0.68 5.30 84.65 0.45 1.12 16 7 N -0.92 -52.00 11.32 21.44 0.24 -51.76 16 8 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.53 -20.91 4.49 -901.46 -4.05 -24.96 16 13 C 0.04 1.33 9.04 127.69 1.15 2.48 16 14 C 0.02 0.75 4.42 86.31 0.38 1.13 16 15 C 0.17 3.93 3.08 29.85 0.09 4.03 16 16 H 0.10 2.58 6.46 -2.39 -0.02 2.57 16 17 O -0.55 -12.97 13.00 -148.98 -1.94 -14.90 16 18 C -0.11 -2.12 5.00 -19.87 -0.10 -2.22 16 19 C -0.05 -0.62 9.33 22.27 0.21 -0.41 16 20 C -0.10 -0.91 10.05 22.27 0.22 -0.69 16 21 C -0.06 -0.79 9.56 22.27 0.21 -0.58 16 22 C -0.06 -1.32 6.85 36.37 0.25 -1.07 16 23 N 0.03 0.81 4.45 -46.47 -0.21 0.60 16 24 O -0.16 -4.24 18.45 18.88 0.35 -3.89 16 25 O -0.20 -6.04 18.45 18.89 0.35 -5.69 16 26 C -0.06 -1.22 9.19 22.27 0.20 -1.02 16 27 H 0.06 2.95 6.07 -2.39 -0.01 2.94 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.03 1.34 6.20 -2.39 -0.01 1.32 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.07 2.34 6.47 -2.39 -0.02 2.33 16 32 H 0.06 2.48 6.10 -2.39 -0.01 2.46 16 33 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.09 2.50 5.83 -2.39 -0.01 2.49 16 35 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 36 H 0.39 6.28 7.40 -74.06 -0.55 5.73 16 37 H 0.17 1.14 6.62 -2.91 -0.02 1.12 16 38 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 39 H 0.17 1.79 7.61 -2.91 -0.02 1.77 16 40 H 0.15 3.20 7.61 -2.91 -0.02 3.18 16 Total: -1.00 -67.63 333.23 1.30 -66.32 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.53 Total: 8.45 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 4.00 Total: -19.21 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -4.01 Total: -76.11 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -1.24 Total: -24.49 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -67.63 1.30 -66.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269679025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.185 kcal (2) G-P(sol) polarization free energy of solvation -67.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds