Wall clock time and date at job start Tue Mar 31 2020 07:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47135 * 2 1 4 4 H 1.09000 * 109.46735 * 304.99421 * 3 2 1 5 5 C 1.53004 * 109.46861 * 185.00219 * 3 2 1 6 6 O 1.42905 * 109.46883 * 304.99565 * 5 3 2 7 7 N 1.46496 * 109.47370 * 64.99783 * 3 2 1 8 8 C 1.34772 * 119.99734 * 204.99713 * 7 3 2 9 9 O 1.21585 * 120.00685 * 0.02562 * 8 7 3 10 10 N 1.34778 * 119.99745 * 180.02562 * 8 7 3 11 11 C 1.39948 * 120.00147 * 174.73777 * 10 8 7 12 12 C 1.38957 * 120.03446 * 326.18396 * 11 10 8 13 13 C 1.38156 * 120.06637 * 179.71697 * 12 11 10 14 14 C 1.38166 * 120.13759 * 0.55351 * 13 12 11 15 15 C 1.38905 * 120.07082 * 359.72207 * 14 13 12 16 16 O 1.35753 * 120.03790 * 179.97438 * 15 14 13 17 17 C 1.34826 * 117.00190 * 185.92503 * 16 15 14 18 18 H 1.08006 * 120.00162 * 5.40341 * 17 16 15 19 19 C 1.38654 * 119.99917 * 185.40552 * 17 16 15 20 20 N 1.31562 * 119.99902 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00209 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47019 * 89.99928 * 21 19 17 23 23 H 1.48499 * 109.47392 * 210.00454 * 21 19 17 24 24 H 1.48504 * 109.47088 * 329.99932 * 21 19 17 25 25 C 1.38707 * 120.03500 * 146.45186 * 11 10 8 26 26 H 1.09005 * 109.46842 * 59.99915 * 1 2 3 27 27 H 1.08998 * 109.47367 * 300.00773 * 1 2 3 28 28 H 1.08996 * 109.47325 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46494 * 119.99782 * 2 1 3 30 30 H 1.08998 * 109.46631 * 239.99336 * 2 1 3 31 31 H 1.08995 * 109.47205 * 64.99212 * 5 3 2 32 32 H 1.08995 * 109.47118 * 184.99951 * 5 3 2 33 33 H 0.96696 * 113.99914 * 179.97438 * 6 5 3 34 34 H 0.96994 * 120.00113 * 25.00191 * 7 3 2 35 35 H 0.97003 * 120.00114 * 354.74440 * 10 8 7 36 36 H 1.07999 * 119.96583 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.93223 * 180.25499 * 13 12 11 38 38 H 1.08005 * 119.96732 * 179.70193 * 14 13 12 39 39 H 0.96998 * 119.99912 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.07024 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5649 1.4442 -0.1258 6 8 4.1293 0.6403 0.9121 7 7 1.6525 2.0975 1.2517 8 6 1.5257 3.4384 1.2994 9 8 1.7326 4.1045 0.3035 10 7 1.1697 4.0411 2.4511 11 6 1.1449 5.4381 2.5314 12 6 2.0670 6.1922 1.8158 13 6 2.0394 7.5715 1.8900 14 6 1.1030 8.2050 2.6842 15 6 0.1822 7.4565 3.4063 16 8 -0.7372 8.0796 4.1869 17 6 -1.5202 7.2956 4.9551 18 1 -1.3426 6.2311 4.9975 19 6 -2.5534 7.8559 5.6906 20 7 -3.3171 7.0909 6.4405 21 14 -2.8602 9.6970 5.6178 22 1 -3.8122 9.9971 4.5184 23 1 -3.4344 10.1546 6.9086 24 1 -1.5777 10.4031 5.3686 25 6 0.2036 6.0711 3.3295 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.8499 1.0375 -1.0960 32 1 3.9356 2.4653 -0.0367 33 1 5.0951 0.5955 0.8937 34 1 1.4871 1.5662 2.0462 35 1 0.9306 3.5066 3.2245 36 1 2.8032 5.6998 1.1979 37 1 2.7544 8.1557 1.3297 38 1 1.0870 9.2833 2.7439 39 1 -4.0402 7.4828 6.9548 40 1 -0.5116 5.4870 3.8897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271978528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:08 Heat of formation + Delta-G solvation = -81.032740 kcal Electronic energy + Delta-G solvation = -23238.311284 eV Core-core repulsion = 19633.070996 eV Total energy + Delta-G solvation = -3605.240288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47957 -39.03562 -37.82722 -36.52406 -35.28809 -34.20921 -32.42961 -32.20031 -29.52798 -28.99711 -28.13899 -25.19254 -23.91458 -22.61801 -21.73781 -20.82153 -20.40545 -18.63539 -17.80932 -17.64783 -17.49548 -16.21580 -15.61892 -15.26978 -15.08576 -14.73892 -14.47818 -14.36382 -14.04775 -13.82924 -13.74473 -13.54536 -13.07184 -12.79494 -12.56502 -12.31218 -12.15808 -11.67190 -11.60199 -11.28439 -11.21784 -11.07754 -10.90677 -10.75569 -10.30180 -10.24877 -9.97458 -9.64704 -9.47993 -9.13228 -8.83179 -7.74442 -7.24036 -6.40962 -4.07871 2.01216 2.32590 2.71205 3.22983 3.27331 3.32106 3.42282 4.04105 4.22093 4.25669 4.48259 4.55905 4.76284 4.89157 4.90237 5.10132 5.11733 5.24088 5.39080 5.46319 5.60801 5.64204 5.71306 5.87983 5.95746 6.03040 6.05511 6.20394 6.23448 6.44433 6.48093 6.78319 6.95509 7.20110 7.24491 7.30480 7.34088 7.64385 7.79673 8.03575 8.07346 8.66318 8.94874 9.57850 10.66869 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.003326 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.156483 B = 8416.713959 C = 9240.575700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C 0.167 3.833 4 H 0.101 0.899 5 C 0.061 3.939 6 O -0.569 6.569 7 N -0.733 5.733 8 C 0.704 3.296 9 O -0.576 6.576 10 N -0.682 5.682 11 C 0.200 3.800 12 C -0.197 4.197 13 C -0.064 4.064 14 C -0.203 4.203 15 C 0.175 3.825 16 O -0.217 6.217 17 C -0.389 4.389 18 H 0.104 0.896 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.246 4.246 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.377 0.623 34 H 0.398 0.602 35 H 0.404 0.596 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.279 0.721 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.011 -13.182 -10.871 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C 0.061 3.939 4 H 0.119 0.881 5 C -0.018 4.018 6 O -0.374 6.374 7 N -0.389 5.389 8 C 0.405 3.595 9 O -0.453 6.453 10 N -0.329 5.329 11 C 0.106 3.894 12 C -0.218 4.218 13 C -0.083 4.083 14 C -0.223 4.223 15 C 0.123 3.877 16 O -0.122 6.122 17 C -0.464 4.464 18 H 0.122 0.878 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.268 4.268 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.223 0.777 34 H 0.232 0.768 35 H 0.239 0.761 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.330 -12.475 -11.463 20.382 hybrid contribution 0.040 0.099 0.690 0.698 sum 11.370 -12.377 -10.774 19.963 Atomic orbital electron populations 1.21801 0.95281 1.01682 1.02439 1.21708 0.96207 0.94943 1.03480 1.20957 0.92057 0.93517 0.87319 0.88135 1.22707 0.94458 0.94707 0.89950 1.86452 1.25210 1.72196 1.53590 1.45076 1.74734 1.05074 1.13966 1.15917 0.78099 0.81951 0.83540 1.90929 1.56980 1.63456 1.33919 1.42598 1.70978 1.05911 1.13378 1.17192 0.94389 0.80297 0.97496 1.20610 1.01784 0.93543 1.05904 1.20514 0.97141 0.93694 0.96953 1.20223 0.98909 0.99398 1.03785 1.18789 0.89231 0.90121 0.89606 1.83613 1.42992 1.35954 1.49610 1.20722 1.10844 0.93003 1.21879 0.87833 1.24458 0.94266 1.00122 0.95144 1.69646 1.18364 1.36077 1.27880 0.86180 0.79539 0.83683 0.77509 1.19924 1.20837 1.18265 1.20902 1.02600 0.94840 1.08466 0.92596 0.92416 0.92545 0.90525 0.90626 0.92964 0.92818 0.77661 0.76773 0.76128 0.86145 0.86527 0.86442 0.91106 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.80 37.16 0.36 -0.88 16 2 C -0.13 -0.97 5.19 -26.73 -0.14 -1.11 16 3 C 0.17 1.64 2.37 -67.93 -0.16 1.48 16 4 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 5 C 0.06 0.54 6.85 37.16 0.25 0.80 16 6 O -0.57 -4.79 12.83 -35.23 -0.45 -5.24 16 7 N -0.73 -8.22 4.48 -58.68 -0.26 -8.49 16 8 C 0.70 10.81 8.26 -86.92 -0.72 10.09 16 9 O -0.58 -10.75 13.72 5.29 0.07 -10.68 16 10 N -0.68 -10.69 5.35 -14.24 -0.08 -10.77 16 11 C 0.20 3.87 6.27 -83.71 -0.52 3.34 16 12 C -0.20 -3.75 8.65 -39.34 -0.34 -4.09 16 13 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 14 C -0.20 -4.14 9.99 -39.36 -0.39 -4.53 16 15 C 0.18 4.09 6.64 -39.14 -0.26 3.83 16 16 O -0.22 -5.73 8.58 0.05 0.00 -5.73 16 17 C -0.39 -10.91 9.90 30.89 0.31 -10.61 16 18 H 0.10 2.95 5.53 -52.48 -0.29 2.66 16 19 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 20 N -0.88 -25.34 13.96 55.48 0.77 -24.56 16 21 Si 0.91 21.72 28.62 -169.99 -4.86 16.86 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.25 -5.36 9.04 -39.21 -0.35 -5.71 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.51 7.75 -51.93 -0.40 0.11 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.62 7.73 -51.93 -0.40 0.21 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.38 1.73 9.12 45.56 0.42 2.14 16 34 H 0.40 3.71 8.62 -40.82 -0.35 3.36 16 35 H 0.40 5.19 8.83 -40.82 -0.36 4.83 16 36 H 0.12 2.26 6.45 -52.49 -0.34 1.92 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.12 2.21 8.06 -52.48 -0.42 1.78 16 39 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.14 3.02 5.71 -52.49 -0.30 2.72 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -33.07 339.80 -6.66 -39.73 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.52 Total: 11.05 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.46 Total: -7.28 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.44 Total: -43.82 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.38 Total: -21.65 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.07 -6.66 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271978528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.303 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds