Wall clock time and date at job start Tue Mar 31 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47135 * 2 1 4 4 H 1.09000 * 109.46735 * 304.99421 * 3 2 1 5 5 C 1.53004 * 109.46861 * 185.00219 * 3 2 1 6 6 O 1.42905 * 109.46883 * 304.99565 * 5 3 2 7 7 N 1.46496 * 109.47370 * 64.99783 * 3 2 1 8 8 C 1.34772 * 119.99734 * 204.99713 * 7 3 2 9 9 O 1.21585 * 120.00685 * 0.02562 * 8 7 3 10 10 N 1.34778 * 119.99745 * 180.02562 * 8 7 3 11 11 C 1.39948 * 120.00147 * 174.73777 * 10 8 7 12 12 C 1.38957 * 120.03446 * 326.18396 * 11 10 8 13 13 C 1.38156 * 120.06637 * 179.71697 * 12 11 10 14 14 C 1.38166 * 120.13759 * 0.55351 * 13 12 11 15 15 C 1.38905 * 120.07082 * 359.72207 * 14 13 12 16 16 O 1.35753 * 120.03790 * 179.97438 * 15 14 13 17 17 C 1.34826 * 117.00190 * 185.92503 * 16 15 14 18 18 H 1.08006 * 120.00162 * 5.40341 * 17 16 15 19 19 C 1.38654 * 119.99917 * 185.40552 * 17 16 15 20 20 N 1.31562 * 119.99902 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00209 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47019 * 89.99928 * 21 19 17 23 23 H 1.48499 * 109.47392 * 210.00454 * 21 19 17 24 24 H 1.48504 * 109.47088 * 329.99932 * 21 19 17 25 25 C 1.38707 * 120.03500 * 146.45186 * 11 10 8 26 26 H 1.09005 * 109.46842 * 59.99915 * 1 2 3 27 27 H 1.08998 * 109.47367 * 300.00773 * 1 2 3 28 28 H 1.08996 * 109.47325 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46494 * 119.99782 * 2 1 3 30 30 H 1.08998 * 109.46631 * 239.99336 * 2 1 3 31 31 H 1.08995 * 109.47205 * 64.99212 * 5 3 2 32 32 H 1.08995 * 109.47118 * 184.99951 * 5 3 2 33 33 H 0.96696 * 113.99914 * 179.97438 * 6 5 3 34 34 H 0.96994 * 120.00113 * 25.00191 * 7 3 2 35 35 H 0.97003 * 120.00114 * 354.74440 * 10 8 7 36 36 H 1.07999 * 119.96583 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.93223 * 180.25499 * 13 12 11 38 38 H 1.08005 * 119.96732 * 179.70193 * 14 13 12 39 39 H 0.96998 * 119.99912 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.07024 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5649 1.4442 -0.1258 6 8 4.1293 0.6403 0.9121 7 7 1.6525 2.0975 1.2517 8 6 1.5257 3.4384 1.2994 9 8 1.7326 4.1045 0.3035 10 7 1.1697 4.0411 2.4511 11 6 1.1449 5.4381 2.5314 12 6 2.0670 6.1922 1.8158 13 6 2.0394 7.5715 1.8900 14 6 1.1030 8.2050 2.6842 15 6 0.1822 7.4565 3.4063 16 8 -0.7372 8.0796 4.1869 17 6 -1.5202 7.2956 4.9551 18 1 -1.3426 6.2311 4.9975 19 6 -2.5534 7.8559 5.6906 20 7 -3.3171 7.0909 6.4405 21 14 -2.8602 9.6970 5.6178 22 1 -3.8122 9.9971 4.5184 23 1 -3.4344 10.1546 6.9086 24 1 -1.5777 10.4031 5.3686 25 6 0.2036 6.0711 3.3295 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.8499 1.0375 -1.0960 32 1 3.9356 2.4653 -0.0367 33 1 5.0951 0.5955 0.8937 34 1 1.4871 1.5662 2.0462 35 1 0.9306 3.5066 3.2245 36 1 2.8032 5.6998 1.1979 37 1 2.7544 8.1557 1.3297 38 1 1.0870 9.2833 2.7439 39 1 -4.0402 7.4828 6.9548 40 1 -0.5116 5.4870 3.8897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271978528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:07 Heat of formation + Delta-G solvation = -106.227249 kcal Electronic energy + Delta-G solvation = -23239.403800 eV Core-core repulsion = 19633.070996 eV Total energy + Delta-G solvation = -3606.332804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78124 -40.64638 -38.92977 -37.94093 -36.12926 -35.64090 -34.40158 -33.22788 -31.03761 -30.37098 -29.23583 -27.17885 -24.73989 -23.83397 -23.39821 -21.92297 -21.58915 -20.15395 -19.38437 -19.26292 -18.31134 -17.45783 -17.00375 -16.63140 -16.53820 -16.00790 -15.80471 -15.60182 -15.54898 -15.18101 -14.95310 -14.74664 -14.50688 -14.20185 -14.01562 -13.53808 -13.31654 -13.20146 -12.83142 -12.68517 -12.47263 -12.33127 -12.06619 -11.98927 -11.79006 -11.52812 -11.37452 -11.14164 -10.88745 -10.81998 -10.14507 -9.37103 -8.88202 -8.48994 -6.21510 0.43674 0.66900 1.33536 1.37571 1.53307 1.55852 2.03782 2.29854 2.79671 3.08004 3.12249 3.15823 3.42055 3.75425 4.04456 4.11808 4.23815 4.32247 4.43351 4.48452 4.52834 4.60586 4.65374 4.72567 4.77617 4.91661 4.92637 5.08324 5.17691 5.33109 5.37533 5.40832 5.50043 5.53699 5.65895 5.76048 5.88847 5.99900 6.24110 6.85624 6.87899 6.91885 7.43685 7.59164 8.62338 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.003326 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.156483 B = 8416.713959 C = 9240.575700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C 0.159 3.841 4 H 0.087 0.913 5 C 0.067 3.933 6 O -0.579 6.579 7 N -0.715 5.715 8 C 0.703 3.297 9 O -0.609 6.609 10 N -0.678 5.678 11 C 0.203 3.797 12 C -0.191 4.191 13 C -0.051 4.051 14 C -0.204 4.204 15 C 0.142 3.858 16 O -0.240 6.240 17 C -0.399 4.399 18 H 0.082 0.918 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.268 1.268 24 H -0.260 1.260 25 C -0.258 4.258 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.394 0.606 34 H 0.409 0.591 35 H 0.416 0.584 36 H 0.130 0.870 37 H 0.160 0.840 38 H 0.135 0.865 39 H 0.284 0.716 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.738 -13.512 -12.346 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C 0.054 3.946 4 H 0.105 0.895 5 C -0.012 4.012 6 O -0.387 6.387 7 N -0.370 5.370 8 C 0.404 3.596 9 O -0.488 6.488 10 N -0.326 5.326 11 C 0.107 3.893 12 C -0.212 4.212 13 C -0.069 4.069 14 C -0.224 4.224 15 C 0.092 3.908 16 O -0.147 6.147 17 C -0.475 4.475 18 H 0.100 0.900 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.790 3.210 22 H -0.194 1.194 23 H -0.192 1.192 24 H -0.184 1.184 25 C -0.280 4.280 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.244 0.756 34 H 0.245 0.755 35 H 0.253 0.747 36 H 0.147 0.853 37 H 0.177 0.823 38 H 0.153 0.847 39 H 0.094 0.906 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.099 -12.883 -12.945 22.475 hybrid contribution -0.274 0.000 0.971 1.009 sum 12.826 -12.883 -11.974 21.768 Atomic orbital electron populations 1.21807 0.95634 1.02275 1.01539 1.21647 0.95736 0.93360 1.04439 1.21175 0.93097 0.94380 0.85901 0.89534 1.22564 0.93448 0.93841 0.91310 1.86405 1.26989 1.71797 1.53504 1.45030 1.73275 1.03588 1.15144 1.16032 0.77857 0.83022 0.82725 1.90898 1.58514 1.64526 1.34898 1.42530 1.70966 1.04812 1.14288 1.17240 0.93533 0.82019 0.96495 1.20907 1.01206 0.94168 1.04963 1.20969 0.96657 0.93625 0.95694 1.20528 0.98293 1.00316 1.03221 1.19330 0.89738 0.91182 0.90558 1.83557 1.44228 1.35928 1.50984 1.20692 1.11521 0.92485 1.22778 0.90019 1.25248 0.94043 1.04536 0.94847 1.69723 1.19399 1.37909 1.29217 0.85248 0.79249 0.78286 0.78169 1.19359 1.19237 1.18429 1.20858 1.03232 0.94608 1.09267 0.93214 0.93605 0.91239 0.90310 0.88777 0.90515 0.95053 0.75633 0.75481 0.74692 0.85265 0.82265 0.84748 0.90608 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.80 71.98 0.71 -1.55 16 2 C -0.11 -1.50 5.19 30.60 0.16 -1.34 16 3 C 0.16 2.88 2.37 44.99 0.11 2.99 16 4 H 0.09 1.85 7.58 -2.39 -0.02 1.83 16 5 C 0.07 1.07 6.85 71.98 0.49 1.56 16 6 O -0.58 -8.31 12.83 -148.98 -1.91 -10.22 16 7 N -0.72 -15.20 4.48 -457.83 -2.05 -17.25 16 8 C 0.70 20.99 8.26 179.06 1.48 22.47 16 9 O -0.61 -22.20 13.72 -3.98 -0.05 -22.25 16 10 N -0.68 -20.99 5.35 -317.23 -1.70 -22.68 16 11 C 0.20 7.75 6.27 38.13 0.24 7.98 16 12 C -0.19 -6.92 8.65 22.42 0.19 -6.72 16 13 C -0.05 -1.72 10.03 22.23 0.22 -1.49 16 14 C -0.20 -8.00 9.99 22.41 0.22 -7.78 16 15 C 0.14 6.72 6.64 22.56 0.15 6.87 16 16 O -0.24 -12.99 8.58 -22.73 -0.20 -13.19 16 17 C -0.40 -23.28 9.90 67.92 0.67 -22.61 16 18 H 0.08 4.96 5.53 -2.91 -0.02 4.94 16 19 C 0.01 0.68 5.49 84.83 0.47 1.14 16 20 N -0.92 -54.57 13.96 21.61 0.30 -54.26 16 21 Si 0.97 45.27 28.62 68.60 1.96 47.24 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 25 C -0.26 -11.51 9.04 22.51 0.20 -11.30 16 26 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.04 0.77 7.75 -2.39 -0.02 0.75 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.06 7.73 -2.39 -0.02 1.04 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.39 2.61 9.12 -74.06 -0.68 1.93 16 34 H 0.41 7.04 8.62 -92.71 -0.80 6.24 16 35 H 0.42 10.62 8.83 -92.71 -0.82 9.81 16 36 H 0.13 4.54 6.45 -2.91 -0.02 4.52 16 37 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 38 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 39 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.12 5.61 5.71 -2.91 -0.02 5.60 16 Total: -1.00 -72.69 339.80 0.48 -72.22 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -1.19 Total: 30.20 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.31 Total: -9.80 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -3.45 Total: -94.20 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -2.16 Total: -45.65 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.96 Total: 47.24 kcal Total: -72.69 0.48 -72.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271978528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.012 kcal (2) G-P(sol) polarization free energy of solvation -72.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds