Wall clock time and date at job start Tue Mar 31 2020 07:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 5 5 C 1.46899 * 111.00029 * 85.00270 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00113 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99923 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47375 * 89.99678 * 12 10 8 14 14 H 1.48508 * 109.47196 * 209.99673 * 12 10 8 15 15 H 1.48504 * 109.47051 * 329.99297 * 12 10 8 16 16 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 17 17 C 1.38166 * 120.03477 * 99.72528 * 16 2 1 18 18 C 1.38234 * 120.05640 * 179.72360 * 17 16 2 19 19 N 1.48008 * 119.94482 * 180.25087 * 18 17 16 20 20 O 1.21801 * 119.99945 * 180.29013 * 19 18 17 21 21 O 1.21801 * 119.99587 * 0.30456 * 19 18 17 22 22 C 1.38294 * 120.11205 * 0.55074 * 18 17 16 23 23 C 1.38111 * 120.05507 * 359.72199 * 22 18 17 24 24 C 1.38708 * 120.02299 * 279.99809 * 16 2 1 25 25 O 1.35907 * 120.05937 * 359.97438 * 24 16 2 26 26 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 28 28 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 29 29 H 1.00908 * 110.99583 * 208.95182 * 4 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 32 32 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 33 33 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 34 34 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 35 35 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 36 36 H 0.97008 * 120.00167 * 179.97438 * 11 10 8 37 37 H 1.08006 * 119.96751 * 359.97438 * 17 16 2 38 38 H 1.08002 * 119.96941 * 179.70225 * 22 18 17 39 39 H 1.08003 * 120.03047 * 179.97438 * 23 22 18 40 40 H 0.96691 * 113.99899 * 89.99325 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5327 -3.5742 7 6 2.6610 0.4203 -4.7694 8 6 3.1676 -0.3236 -5.9782 9 1 3.4178 -1.3714 -5.9017 10 6 3.3106 0.3332 -7.1820 11 7 3.7531 -0.3158 -8.2367 12 14 2.8770 2.1454 -7.3145 13 1 4.0768 2.9651 -7.0081 14 1 2.4125 2.4437 -8.6931 15 1 1.7970 2.4679 -6.3476 16 6 2.0323 -0.7106 1.2304 17 6 2.4533 -2.0239 1.1470 18 6 2.9196 -2.6743 2.2742 19 7 3.3752 -4.0794 2.1809 20 8 3.7812 -4.6552 3.1745 21 8 3.3443 -4.6599 1.1105 22 6 2.9552 -2.0163 3.4900 23 6 2.5302 -0.7053 3.5798 24 6 2.0671 -0.0484 2.4487 25 8 1.6488 1.2419 2.5344 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5916 -0.9261 -3.3684 33 1 1.9201 -1.3565 -3.8032 34 1 1.6653 0.8133 -4.9751 35 1 3.3369 1.2443 -4.5408 36 1 3.8534 0.1462 -9.0837 37 1 2.4219 -2.5414 0.1995 38 1 3.3154 -2.5283 4.3701 39 1 2.5578 -0.1920 4.5296 40 1 0.7074 1.3377 2.7333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273468074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:33 Heat of formation + Delta-G solvation = -28.865258 kcal Electronic energy + Delta-G solvation = -22927.505001 eV Core-core repulsion = 19324.526865 eV Total energy + Delta-G solvation = -3602.978136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.39607 -40.80355 -37.62150 -37.17258 -36.71645 -34.28926 -32.43656 -31.52768 -30.80844 -29.52505 -26.62116 -26.35256 -24.33911 -23.11815 -22.11552 -21.00415 -20.23045 -19.28290 -19.02818 -18.80954 -17.70787 -16.78563 -16.67829 -16.29625 -15.92683 -15.17204 -14.78652 -14.44861 -14.20989 -13.91063 -13.73156 -13.10424 -13.02805 -12.75142 -12.61121 -12.30448 -12.14965 -11.83598 -11.74856 -11.54167 -11.35041 -11.29953 -11.07560 -10.97669 -10.78543 -9.98542 -9.85909 -9.78603 -9.66762 -9.53371 -9.18218 -8.54172 -8.51102 -6.03659 -4.01701 -0.52889 0.40834 0.96299 1.15433 2.64801 3.29596 3.33883 3.37058 3.40035 3.78031 3.87888 4.03043 4.36719 4.44806 4.45736 4.68525 4.88415 5.02232 5.10680 5.19608 5.28711 5.29853 5.35075 5.49386 5.59129 5.62019 5.68265 5.73931 5.97011 6.11191 6.14864 6.46502 6.51146 6.83633 6.86827 7.02139 7.27500 7.31284 7.43120 7.43584 7.79781 8.55104 9.02100 9.58584 11.09907 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.003140 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.557017 B = 8914.412477 C =10117.088388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.124 3.876 3 H 0.068 0.932 4 N -0.686 5.686 5 C 0.057 3.943 6 C -0.101 4.101 7 C -0.012 4.012 8 C -0.520 4.520 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.904 5.904 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.109 4.109 17 C -0.029 4.029 18 C -0.054 4.054 19 N 0.029 4.971 20 O -0.166 6.166 21 O -0.149 6.149 22 C -0.043 4.043 23 C -0.145 4.145 24 C 0.167 3.833 25 O -0.487 6.487 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.341 0.659 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.016 0.984 35 H 0.008 0.992 36 H 0.263 0.737 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.659 1.865 27.869 28.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 H 0.086 0.914 4 N -0.319 5.319 5 C -0.071 4.071 6 C -0.138 4.138 7 C -0.050 4.050 8 C -0.558 4.558 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.543 5.543 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.111 4.111 17 C -0.048 4.048 18 C -0.137 4.137 19 N 0.548 4.452 20 O -0.380 6.380 21 O -0.367 6.367 22 C -0.063 4.063 23 C -0.165 4.165 24 C 0.121 3.879 25 O -0.299 6.299 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.160 0.840 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.188 0.812 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.881 2.458 27.441 28.397 hybrid contribution 0.303 1.069 0.131 1.119 sum -6.578 3.527 27.571 28.564 Atomic orbital electron populations 1.21758 0.92971 1.02833 1.01642 1.20391 0.96410 0.95891 0.85869 0.91434 1.60773 1.33506 1.33887 1.03727 1.22236 1.00755 0.93673 0.90477 1.21457 1.00195 0.99217 0.92980 1.19532 0.96441 0.95171 0.93843 1.21147 1.43508 0.98399 0.92721 0.90958 1.25045 0.94681 0.98097 0.95761 1.69919 1.46769 1.36631 1.00947 0.86769 0.79236 0.85930 0.77261 1.20399 1.21390 1.19071 1.20413 1.01033 0.93255 0.96354 1.20977 0.91535 0.93567 0.98693 1.21139 1.11720 0.83273 0.97522 1.43561 0.98291 1.02827 1.00471 1.94527 1.48322 1.67656 1.27513 1.94605 1.58440 1.67093 1.16539 1.20913 0.94799 0.94115 0.96428 1.21401 1.02065 0.93496 0.99493 1.18607 0.94251 0.83520 0.91547 1.84786 1.31176 1.20551 1.93375 0.91618 0.93090 0.91255 0.83990 0.91101 0.95453 0.92946 0.91698 0.96614 0.97333 0.92752 0.81182 0.82573 0.82917 0.73918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.39 37.16 0.35 -0.79 16 2 C 0.12 1.23 2.49 -68.86 -0.17 1.05 16 3 H 0.07 0.71 7.51 -51.93 -0.39 0.32 16 4 N -0.69 -8.56 5.61 -107.95 -0.61 -9.16 16 5 C 0.06 0.86 5.48 -3.83 -0.02 0.83 16 6 C -0.10 -1.93 5.41 -26.74 -0.14 -2.08 16 7 C -0.01 -0.28 4.04 -27.89 -0.11 -0.39 16 8 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 9 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 10 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 11 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 12 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 16 C -0.11 -0.96 5.00 -104.48 -0.52 -1.48 16 17 C -0.03 -0.28 8.37 -39.61 -0.33 -0.62 16 18 C -0.05 -0.54 6.85 -79.93 -0.55 -1.09 16 19 N 0.03 0.36 4.45 33.97 0.15 0.51 16 20 O -0.17 -2.14 18.44 -29.46 -0.54 -2.68 16 21 O -0.15 -2.11 18.44 -29.46 -0.54 -2.65 16 22 C -0.04 -0.32 9.55 -39.61 -0.38 -0.70 16 23 C -0.15 -0.87 9.99 -39.44 -0.39 -1.26 16 24 C 0.17 1.18 6.67 -39.22 -0.26 0.92 16 25 O -0.49 -2.84 12.67 -19.45 -0.25 -3.09 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.29 7.64 -51.93 -0.40 -0.10 16 28 H 0.07 0.65 7.45 -51.92 -0.39 0.27 16 29 H 0.34 4.18 6.99 -39.29 -0.27 3.90 16 30 H 0.07 1.05 7.44 -51.93 -0.39 0.66 16 31 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 35 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.17 1.83 6.27 -52.48 -0.33 1.50 16 38 H 0.16 0.91 7.61 -52.49 -0.40 0.51 16 39 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 40 H 0.40 0.50 8.64 45.56 0.39 0.90 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -33.40 341.33 -8.14 -41.53 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.63 Total: -0.29 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.97 Total: -19.04 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.32 Total: -36.00 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -1.33 Total: -8.42 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.40 -8.14 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273468074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.670 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds