Wall clock time and date at job start Tue Mar 31 2020 07:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 5 5 C 1.46899 * 111.00029 * 85.00270 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00113 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99923 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47375 * 89.99678 * 12 10 8 14 14 H 1.48508 * 109.47196 * 209.99673 * 12 10 8 15 15 H 1.48504 * 109.47051 * 329.99297 * 12 10 8 16 16 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 17 17 C 1.38166 * 120.03477 * 99.72528 * 16 2 1 18 18 C 1.38234 * 120.05640 * 179.72360 * 17 16 2 19 19 N 1.48008 * 119.94482 * 180.25087 * 18 17 16 20 20 O 1.21801 * 119.99945 * 180.29013 * 19 18 17 21 21 O 1.21801 * 119.99587 * 0.30456 * 19 18 17 22 22 C 1.38294 * 120.11205 * 0.55074 * 18 17 16 23 23 C 1.38111 * 120.05507 * 359.72199 * 22 18 17 24 24 C 1.38708 * 120.02299 * 279.99809 * 16 2 1 25 25 O 1.35907 * 120.05937 * 359.97438 * 24 16 2 26 26 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 28 28 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 29 29 H 1.00908 * 110.99583 * 208.95182 * 4 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 32 32 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 33 33 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 34 34 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 35 35 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 36 36 H 0.97008 * 120.00167 * 179.97438 * 11 10 8 37 37 H 1.08006 * 119.96751 * 359.97438 * 17 16 2 38 38 H 1.08002 * 119.96941 * 179.70225 * 22 18 17 39 39 H 1.08003 * 120.03047 * 179.97438 * 23 22 18 40 40 H 0.96691 * 113.99899 * 89.99325 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5327 -3.5742 7 6 2.6610 0.4203 -4.7694 8 6 3.1676 -0.3236 -5.9782 9 1 3.4178 -1.3714 -5.9017 10 6 3.3106 0.3332 -7.1820 11 7 3.7531 -0.3158 -8.2367 12 14 2.8770 2.1454 -7.3145 13 1 4.0768 2.9651 -7.0081 14 1 2.4125 2.4437 -8.6931 15 1 1.7970 2.4679 -6.3476 16 6 2.0323 -0.7106 1.2304 17 6 2.4533 -2.0239 1.1470 18 6 2.9196 -2.6743 2.2742 19 7 3.3752 -4.0794 2.1809 20 8 3.7812 -4.6552 3.1745 21 8 3.3443 -4.6599 1.1105 22 6 2.9552 -2.0163 3.4900 23 6 2.5302 -0.7053 3.5798 24 6 2.0671 -0.0484 2.4487 25 8 1.6488 1.2419 2.5344 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5916 -0.9261 -3.3684 33 1 1.9201 -1.3565 -3.8032 34 1 1.6653 0.8133 -4.9751 35 1 3.3369 1.2443 -4.5408 36 1 3.8534 0.1462 -9.0837 37 1 2.4219 -2.5414 0.1995 38 1 3.3154 -2.5283 4.3701 39 1 2.5578 -0.1920 4.5296 40 1 0.7074 1.3377 2.7333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273468074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:33 Heat of formation + Delta-G solvation = -52.193300 kcal Electronic energy + Delta-G solvation = -22928.516581 eV Core-core repulsion = 19324.526865 eV Total energy + Delta-G solvation = -3603.989716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.28531 -41.44784 -38.37627 -37.91920 -37.68594 -35.89776 -34.18084 -32.17206 -32.09667 -30.43424 -28.13367 -27.25381 -25.15742 -24.24131 -23.21722 -21.98559 -21.73008 -20.04251 -19.77695 -19.60240 -18.88661 -18.61988 -17.43657 -16.99465 -16.75340 -16.36462 -15.97378 -15.51708 -15.41017 -15.01746 -14.64193 -14.37247 -13.92769 -13.85583 -13.70477 -13.49611 -13.21335 -12.94768 -12.77690 -12.70880 -12.58303 -12.39722 -12.32656 -12.16119 -11.80852 -11.78303 -11.51432 -11.42675 -11.27104 -10.77129 -10.43506 -10.23734 -9.50136 -8.29724 -6.34643 -1.32967 -0.18846 0.16399 0.35325 1.35341 1.37951 1.50105 2.04919 2.36143 2.83390 2.99222 3.05417 3.14547 3.40215 3.72595 3.80317 4.07912 4.14866 4.20478 4.25611 4.42260 4.53304 4.61191 4.63986 4.67292 4.73182 4.84928 4.89235 4.96763 4.99683 5.07183 5.11733 5.29112 5.36634 5.50787 5.59171 5.65871 6.00150 6.25518 6.30082 6.43249 6.58217 6.74155 7.29991 8.87535 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.003140 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.557017 B = 8914.412477 C =10117.088388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.127 3.873 3 H 0.070 0.930 4 N -0.694 5.694 5 C 0.072 3.928 6 C -0.093 4.093 7 C -0.009 4.009 8 C -0.536 4.536 9 H 0.026 0.974 10 C -0.001 4.001 11 N -0.954 5.954 12 Si 0.957 3.043 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.242 1.242 16 C -0.118 4.118 17 C -0.038 4.038 18 C -0.073 4.073 19 N 0.032 4.968 20 O -0.157 6.157 21 O -0.208 6.208 22 C -0.034 4.034 23 C -0.131 4.131 24 C 0.186 3.814 25 O -0.490 6.490 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.340 0.660 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.266 0.734 37 H 0.151 0.849 38 H 0.176 0.824 39 H 0.190 0.810 40 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.897 5.317 31.147 32.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.018 3.982 3 H 0.088 0.912 4 N -0.326 5.326 5 C -0.057 4.057 6 C -0.131 4.131 7 C -0.046 4.046 8 C -0.574 4.574 9 H 0.045 0.955 10 C -0.197 4.197 11 N -0.595 5.595 12 Si 0.780 3.220 13 H -0.192 1.192 14 H -0.210 1.210 15 H -0.165 1.165 16 C -0.120 4.120 17 C -0.057 4.057 18 C -0.156 4.156 19 N 0.546 4.454 20 O -0.378 6.378 21 O -0.414 6.414 22 C -0.053 4.053 23 C -0.150 4.150 24 C 0.140 3.860 25 O -0.306 6.306 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.159 0.841 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.169 0.831 38 H 0.193 0.807 39 H 0.207 0.793 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -8.159 5.879 30.656 32.263 hybrid contribution 0.695 -0.003 -0.763 1.032 sum -7.465 5.876 29.893 31.366 Atomic orbital electron populations 1.21776 0.91858 1.02518 1.02905 1.20416 0.97192 0.95599 0.84981 0.91221 1.60713 1.33634 1.33804 1.04483 1.21936 1.00930 0.93325 0.89490 1.21280 0.99671 0.98395 0.93793 1.19473 0.96430 0.95596 0.93147 1.21540 1.43597 0.97012 0.95258 0.95530 1.26121 0.94431 1.04057 0.95106 1.70090 1.48402 1.39202 1.01819 0.85564 0.79949 0.78650 0.77884 1.19155 1.21014 1.16509 1.20316 1.01977 0.92755 0.96908 1.20836 0.92542 0.94233 0.98126 1.21270 1.13739 0.81700 0.98917 1.43943 0.97681 1.03885 0.99922 1.94475 1.47525 1.68468 1.27287 1.94609 1.61156 1.68445 1.17158 1.21241 0.93664 0.94680 0.95703 1.21740 1.00185 0.92544 1.00501 1.18623 0.92793 0.83694 0.90902 1.84745 1.33251 1.19258 1.93328 0.92729 0.89694 0.92145 0.84123 0.90329 0.94747 0.93928 0.93215 0.95825 0.96282 0.92496 0.83149 0.80713 0.79278 0.71166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.39 71.98 0.68 -1.26 16 2 C 0.13 2.26 2.49 44.17 0.11 2.37 16 3 H 0.07 1.24 7.51 -2.39 -0.02 1.23 16 4 N -0.69 -16.98 5.61 -495.45 -2.78 -19.75 16 5 C 0.07 2.08 5.48 86.30 0.47 2.55 16 6 C -0.09 -3.64 5.41 30.59 0.17 -3.48 16 7 C -0.01 -0.40 4.04 29.84 0.12 -0.28 16 8 C -0.54 -31.77 9.66 25.60 0.25 -31.52 16 9 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 10 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 11 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 12 Si 0.96 44.42 27.47 68.60 1.88 46.30 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 16 C -0.12 -1.84 5.00 -19.77 -0.10 -1.94 16 17 C -0.04 -0.75 8.37 22.25 0.19 -0.56 16 18 C -0.07 -1.42 6.85 36.39 0.25 -1.17 16 19 N 0.03 0.83 4.45 -46.44 -0.21 0.62 16 20 O -0.16 -4.03 18.44 18.88 0.35 -3.68 16 21 O -0.21 -6.44 18.44 18.88 0.35 -6.09 16 22 C -0.03 -0.40 9.55 22.25 0.21 -0.19 16 23 C -0.13 -0.98 9.99 22.36 0.22 -0.75 16 24 C 0.19 1.91 6.67 22.51 0.15 2.06 16 25 O -0.49 -3.29 12.67 -92.51 -1.17 -4.46 16 26 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.08 0.63 7.64 -2.39 -0.02 0.61 16 28 H 0.06 1.00 7.45 -2.38 -0.02 0.98 16 29 H 0.34 8.48 6.99 -89.69 -0.63 7.86 16 30 H 0.08 2.17 7.44 -2.39 -0.02 2.15 16 31 H 0.03 0.95 8.06 -2.39 -0.02 0.93 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 35 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 36 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 37 H 0.15 3.52 6.27 -2.91 -0.02 3.50 16 38 H 0.18 1.43 7.61 -2.91 -0.02 1.40 16 39 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.42 -1.27 8.64 -74.06 -0.64 -1.91 16 Total: -1.00 -76.23 341.33 1.66 -74.58 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -0.24 Total: 7.24 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 3.18 Total: -33.77 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.68 Total: -80.11 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.48 Total: -14.24 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -76.23 1.66 -74.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273468074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.382 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds