Wall clock time and date at job start Tue Mar 31 2020 07:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47045 * 2 1 4 4 N 1.46893 * 109.47440 * 119.99811 * 2 1 3 5 5 C 1.46893 * 111.00163 * 275.00522 * 4 2 1 6 6 C 1.52998 * 109.47335 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47715 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47389 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00271 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00036 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99602 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00147 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47463 * 59.99319 * 12 10 8 14 14 H 1.48498 * 109.47055 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46978 * 299.99182 * 12 10 8 16 16 C 1.50699 * 109.47185 * 240.00418 * 2 1 3 17 17 C 1.38171 * 120.02521 * 264.99940 * 16 2 1 18 18 C 1.38244 * 120.05436 * 180.27947 * 17 16 2 19 19 N 1.48005 * 119.94465 * 179.72176 * 18 17 16 20 20 O 1.21806 * 119.99900 * 359.97438 * 19 18 17 21 21 O 1.21794 * 120.00208 * 179.97438 * 19 18 17 22 22 C 1.38293 * 120.11190 * 359.48377 * 18 17 16 23 23 C 1.38125 * 120.05080 * 0.51384 * 22 18 17 24 24 C 1.38706 * 120.03061 * 85.01706 * 16 2 1 25 25 O 1.35899 * 120.05795 * 359.96041 * 24 16 2 26 26 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47374 * 299.99688 * 1 2 3 28 28 H 1.09003 * 109.47404 * 59.99774 * 1 2 3 29 29 H 1.00910 * 110.99834 * 38.95427 * 4 2 1 30 30 H 1.08999 * 109.47156 * 299.99403 * 5 4 2 31 31 H 1.09000 * 109.47992 * 59.99806 * 5 4 2 32 32 H 1.08998 * 109.47376 * 299.99845 * 6 5 4 33 33 H 1.09000 * 109.47262 * 59.99794 * 6 5 4 34 34 H 1.08998 * 109.46807 * 300.00481 * 7 6 5 35 35 H 1.09000 * 109.46689 * 59.99731 * 7 6 5 36 36 H 0.97002 * 119.99907 * 180.02562 * 11 10 8 37 37 H 1.08002 * 119.96962 * 359.97438 * 17 16 2 38 38 H 1.07993 * 119.97129 * 180.23595 * 22 18 17 39 39 H 1.08006 * 120.02461 * 179.72622 * 23 22 18 40 40 H 0.96694 * 114.00362 * 89.99464 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2226 2.3468 6 6 2.5950 -0.5331 3.5744 7 6 2.6610 0.4201 4.7694 8 6 3.1665 -0.3241 5.9783 9 1 3.4155 -1.3722 5.9021 10 6 3.3103 0.3328 7.1820 11 7 3.0066 1.6090 7.2749 12 14 3.9376 -0.5895 8.6804 13 1 5.2938 -1.1254 8.3999 14 1 4.0014 0.3356 9.8402 15 1 3.0166 -1.7119 8.9921 16 6 2.0323 -0.7103 -1.2305 17 6 2.3611 -2.0509 -1.1691 18 6 2.8275 -2.7017 -2.2961 19 7 3.1848 -4.1363 -2.2261 20 8 3.0682 -4.7424 -1.1760 21 8 3.5953 -4.7108 -3.2185 22 6 2.9560 -2.0158 -3.4901 23 6 2.6286 -0.6756 -3.5565 24 6 2.1654 -0.0188 -2.4255 25 8 1.8422 1.2997 -2.4886 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.4495 -1.4979 1.4100 30 1 2.7588 1.0462 2.1182 31 1 1.0870 0.6163 2.5526 32 1 1.9184 -1.3565 3.8029 33 1 3.5904 -0.9271 3.3690 34 1 3.3379 1.2432 4.5406 35 1 1.6658 0.8144 4.9749 36 1 3.1081 2.0713 8.1216 37 1 2.2583 -2.5896 -0.2387 38 1 3.3170 -2.5274 -4.3700 39 1 2.7334 -0.1392 -4.4881 40 1 2.5781 1.8949 -2.2908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273468077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:36 Heat of formation + Delta-G solvation = -35.409543 kcal Electronic energy + Delta-G solvation = -22859.965890 eV Core-core repulsion = 19256.703972 eV Total energy + Delta-G solvation = -3603.261918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.31915 -40.64965 -37.52597 -37.14238 -36.66046 -34.19806 -32.45155 -31.41154 -30.65403 -29.07154 -26.41565 -26.00695 -24.38447 -23.09676 -22.24430 -21.20157 -20.29327 -19.12086 -18.98394 -18.75150 -17.64229 -16.61149 -16.27009 -16.16953 -15.50615 -15.09262 -14.63458 -14.56029 -14.34535 -13.90412 -13.41954 -13.31580 -12.98678 -12.71128 -12.32304 -12.24094 -11.85148 -11.70923 -11.59317 -11.48832 -11.28235 -11.24745 -11.02006 -10.85431 -10.63961 -10.54623 -9.76834 -9.71865 -9.50257 -9.35137 -9.10347 -8.43461 -8.35960 -6.01678 -4.03870 -0.42210 0.56123 1.06259 1.24129 2.78306 3.33456 3.37438 3.40551 3.47487 3.85785 4.02427 4.16571 4.45445 4.51789 4.63199 4.79624 4.86232 4.97405 5.19730 5.27913 5.34345 5.37609 5.44575 5.52302 5.68874 5.73593 5.78080 5.83622 5.94881 6.21310 6.22883 6.62205 6.65289 6.95169 7.06298 7.13656 7.37729 7.50566 7.64732 7.78479 7.98111 8.41295 9.03109 9.60459 11.09714 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.003018 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.402585 B = 9275.873124 C =10504.889347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.126 3.874 3 H 0.095 0.905 4 N -0.689 5.689 5 C 0.061 3.939 6 C -0.108 4.108 7 C 0.023 3.977 8 C -0.521 4.521 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.091 4.091 17 C -0.015 4.015 18 C -0.057 4.057 19 N 0.031 4.969 20 O -0.153 6.153 21 O -0.169 6.169 22 C -0.047 4.047 23 C -0.147 4.147 24 C 0.163 3.837 25 O -0.489 6.489 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.342 0.658 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.015 0.985 35 H 0.014 0.986 36 H 0.261 0.739 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -1.644 -24.050 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 H 0.113 0.887 4 N -0.319 5.319 5 C -0.067 4.067 6 C -0.146 4.146 7 C -0.014 4.014 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.093 4.093 17 C -0.034 4.034 18 C -0.140 4.140 19 N 0.550 4.450 20 O -0.371 6.371 21 O -0.382 6.382 22 C -0.066 4.066 23 C -0.166 4.166 24 C 0.117 3.883 25 O -0.301 6.301 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.244 -0.914 -24.258 24.491 hybrid contribution -0.032 -0.459 1.192 1.278 sum -3.276 -1.373 -23.067 23.338 Atomic orbital electron populations 1.22460 0.95371 1.02547 1.03165 1.20295 0.93237 0.97442 0.87464 0.88660 1.60701 1.56601 1.10414 1.04218 1.22172 0.99431 0.95240 0.89881 1.21644 1.00226 0.99032 0.93742 1.19047 0.97003 0.94259 0.91108 1.21218 1.43702 0.96430 0.94535 0.92662 1.25025 0.95569 0.94889 0.98988 1.69953 1.48861 1.09000 1.25855 0.86648 0.79524 0.79596 0.82196 1.20184 1.21318 1.20209 1.20268 1.00441 0.93257 0.95294 1.20833 0.91360 0.93720 0.97520 1.21145 1.13055 0.81772 0.98022 1.43575 0.97972 1.03197 1.00292 1.94585 1.57119 1.66781 1.18594 1.94517 1.47477 1.69439 1.26815 1.20866 0.95367 0.93869 0.96474 1.21365 1.01509 0.93949 0.99780 1.18595 0.92830 0.85249 0.91575 1.84785 1.39948 1.12916 1.92442 0.92315 0.91363 0.91535 0.83954 0.91360 0.95225 0.93453 0.92464 0.96641 0.96813 0.92966 0.81947 0.82769 0.83084 0.73823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.14 37.16 0.34 -1.34 16 2 C 0.13 1.28 2.52 -68.87 -0.17 1.11 16 3 H 0.10 0.94 7.35 -51.93 -0.38 0.56 16 4 N -0.69 -8.64 5.25 -107.96 -0.57 -9.21 16 5 C 0.06 0.94 5.48 -3.83 -0.02 0.92 16 6 C -0.11 -2.14 5.41 -26.73 -0.14 -2.28 16 7 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 9 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 12 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 16 C -0.09 -0.86 5.07 -104.47 -0.53 -1.39 16 17 C -0.02 -0.16 8.83 -39.60 -0.35 -0.51 16 18 C -0.06 -0.61 6.85 -79.93 -0.55 -1.16 16 19 N 0.03 0.40 4.45 33.97 0.15 0.55 16 20 O -0.15 -2.23 18.44 -29.46 -0.54 -2.77 16 21 O -0.17 -2.25 18.44 -29.46 -0.54 -2.80 16 22 C -0.05 -0.38 9.55 -39.60 -0.38 -0.76 16 23 C -0.15 -0.99 9.99 -39.43 -0.39 -1.38 16 24 C 0.16 1.27 6.68 -39.22 -0.26 1.01 16 25 O -0.49 -3.10 12.64 -19.42 -0.25 -3.35 16 26 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 27 H 0.07 0.69 7.45 -51.93 -0.39 0.30 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.34 4.09 7.90 -39.29 -0.31 3.78 16 30 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 31 H 0.03 0.46 7.44 -51.93 -0.39 0.07 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.16 1.82 6.44 -52.49 -0.34 1.48 16 38 H 0.15 1.01 7.61 -52.49 -0.40 0.61 16 39 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 40 H 0.40 0.90 9.06 45.56 0.41 1.31 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -32.43 346.69 -8.53 -40.95 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.71 Total: -0.34 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -3.01 Total: -18.82 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.32 Total: -34.76 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.33 Total: -8.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.43 -8.53 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273468077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.544 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds