Wall clock time and date at job start Tue Mar 31 2020 07:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47045 * 2 1 4 4 N 1.46893 * 109.47440 * 119.99811 * 2 1 3 5 5 C 1.46893 * 111.00163 * 275.00522 * 4 2 1 6 6 C 1.52998 * 109.47335 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47715 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47389 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00271 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00036 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99602 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00147 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47463 * 59.99319 * 12 10 8 14 14 H 1.48498 * 109.47055 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46978 * 299.99182 * 12 10 8 16 16 C 1.50699 * 109.47185 * 240.00418 * 2 1 3 17 17 C 1.38171 * 120.02521 * 264.99940 * 16 2 1 18 18 C 1.38244 * 120.05436 * 180.27947 * 17 16 2 19 19 N 1.48005 * 119.94465 * 179.72176 * 18 17 16 20 20 O 1.21806 * 119.99900 * 359.97438 * 19 18 17 21 21 O 1.21794 * 120.00208 * 179.97438 * 19 18 17 22 22 C 1.38293 * 120.11190 * 359.48377 * 18 17 16 23 23 C 1.38125 * 120.05080 * 0.51384 * 22 18 17 24 24 C 1.38706 * 120.03061 * 85.01706 * 16 2 1 25 25 O 1.35899 * 120.05795 * 359.96041 * 24 16 2 26 26 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47374 * 299.99688 * 1 2 3 28 28 H 1.09003 * 109.47404 * 59.99774 * 1 2 3 29 29 H 1.00910 * 110.99834 * 38.95427 * 4 2 1 30 30 H 1.08999 * 109.47156 * 299.99403 * 5 4 2 31 31 H 1.09000 * 109.47992 * 59.99806 * 5 4 2 32 32 H 1.08998 * 109.47376 * 299.99845 * 6 5 4 33 33 H 1.09000 * 109.47262 * 59.99794 * 6 5 4 34 34 H 1.08998 * 109.46807 * 300.00481 * 7 6 5 35 35 H 1.09000 * 109.46689 * 59.99731 * 7 6 5 36 36 H 0.97002 * 119.99907 * 180.02562 * 11 10 8 37 37 H 1.08002 * 119.96962 * 359.97438 * 17 16 2 38 38 H 1.07993 * 119.97129 * 180.23595 * 22 18 17 39 39 H 1.08006 * 120.02461 * 179.72622 * 23 22 18 40 40 H 0.96694 * 114.00362 * 89.99464 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2226 2.3468 6 6 2.5950 -0.5331 3.5744 7 6 2.6610 0.4201 4.7694 8 6 3.1665 -0.3241 5.9783 9 1 3.4155 -1.3722 5.9021 10 6 3.3103 0.3328 7.1820 11 7 3.0066 1.6090 7.2749 12 14 3.9376 -0.5895 8.6804 13 1 5.2938 -1.1254 8.3999 14 1 4.0014 0.3356 9.8402 15 1 3.0166 -1.7119 8.9921 16 6 2.0323 -0.7103 -1.2305 17 6 2.3611 -2.0509 -1.1691 18 6 2.8275 -2.7017 -2.2961 19 7 3.1848 -4.1363 -2.2261 20 8 3.0682 -4.7424 -1.1760 21 8 3.5953 -4.7108 -3.2185 22 6 2.9560 -2.0158 -3.4901 23 6 2.6286 -0.6756 -3.5565 24 6 2.1654 -0.0188 -2.4255 25 8 1.8422 1.2997 -2.4886 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.4495 -1.4979 1.4100 30 1 2.7588 1.0462 2.1182 31 1 1.0870 0.6163 2.5526 32 1 1.9184 -1.3565 3.8029 33 1 3.5904 -0.9271 3.3690 34 1 3.3379 1.2432 4.5406 35 1 1.6658 0.8144 4.9749 36 1 3.1081 2.0713 8.1216 37 1 2.2583 -2.5896 -0.2387 38 1 3.3170 -2.5274 -4.3700 39 1 2.7334 -0.1392 -4.4881 40 1 2.5781 1.8949 -2.2908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273468077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:35 Heat of formation + Delta-G solvation = -56.673326 kcal Electronic energy + Delta-G solvation = -22860.887956 eV Core-core repulsion = 19256.703972 eV Total energy + Delta-G solvation = -3604.183984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.25033 -41.34562 -38.39770 -37.87787 -37.66099 -35.90307 -34.09186 -32.11196 -31.91610 -30.14613 -27.77115 -27.19212 -25.25881 -24.42008 -23.30482 -22.16991 -21.81690 -19.94665 -19.73245 -19.60660 -18.59411 -18.48617 -17.25712 -16.75308 -16.64904 -16.54544 -16.03296 -15.48475 -15.31694 -14.76965 -14.48545 -14.35466 -14.08474 -13.75433 -13.56743 -13.45246 -13.19145 -12.95525 -12.74929 -12.67986 -12.50221 -12.45651 -12.30558 -12.30104 -12.19265 -11.67980 -11.55482 -11.37472 -11.10652 -10.55148 -10.35980 -10.16211 -9.47275 -8.21014 -6.31513 -1.27254 -0.09343 0.22199 0.39402 1.39792 1.42380 1.50337 2.12032 2.40437 2.91830 2.98581 3.12310 3.29084 3.46778 3.82605 3.87659 4.07078 4.13695 4.19137 4.26834 4.39974 4.55952 4.62830 4.69828 4.70290 4.75318 4.82434 4.97923 5.01927 5.08652 5.14758 5.18951 5.24352 5.38861 5.51988 5.75190 5.85966 5.98347 6.26730 6.33248 6.47683 6.60272 6.85374 7.37728 8.90503 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.003018 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.402585 B = 9275.873124 C =10504.889347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.129 3.871 3 H 0.102 0.898 4 N -0.690 5.690 5 C 0.076 3.924 6 C -0.095 4.095 7 C 0.027 3.973 8 C -0.546 4.546 9 H 0.057 0.943 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.962 3.038 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.101 4.101 17 C -0.025 4.025 18 C -0.076 4.076 19 N 0.033 4.967 20 O -0.205 6.205 21 O -0.163 6.163 22 C -0.038 4.038 23 C -0.134 4.134 24 C 0.181 3.819 25 O -0.491 6.491 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.345 0.655 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.050 0.950 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.264 0.736 37 H 0.148 0.852 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 -1.051 -25.882 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.019 3.981 3 H 0.120 0.880 4 N -0.321 5.321 5 C -0.052 4.052 6 C -0.133 4.133 7 C -0.011 4.011 8 C -0.584 4.584 9 H 0.075 0.925 10 C -0.197 4.197 11 N -0.573 5.573 12 Si 0.787 3.213 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.104 4.104 17 C -0.045 4.045 18 C -0.160 4.160 19 N 0.547 4.453 20 O -0.412 6.412 21 O -0.382 6.382 22 C -0.057 4.057 23 C -0.152 4.152 24 C 0.134 3.866 25 O -0.306 6.306 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.166 0.834 38 H 0.191 0.809 39 H 0.205 0.795 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -3.138 -0.344 -26.026 26.217 hybrid contribution -0.081 -0.503 1.622 1.700 sum -3.219 -0.848 -24.404 24.630 Atomic orbital electron populations 1.22400 0.94807 1.02586 1.03224 1.20309 0.93672 0.97562 0.86516 0.87962 1.60593 1.57458 1.10118 1.03955 1.21830 0.99174 0.94942 0.89281 1.21392 1.00190 0.98122 0.93628 1.18944 0.94887 0.94452 0.92769 1.21691 1.43889 0.96849 0.95940 0.92482 1.25945 0.95658 0.95774 1.02316 1.70075 1.49806 1.10571 1.26811 0.85544 0.79209 0.78418 0.78163 1.19319 1.20698 1.19238 1.20191 1.01557 0.92780 0.95824 1.20750 0.92270 0.94288 0.97187 1.21291 1.15074 0.80231 0.99371 1.43927 0.97364 1.04240 0.99798 1.94583 1.59474 1.67934 1.19164 1.94472 1.46831 1.70239 1.26630 1.21191 0.94261 0.94379 0.95864 1.21698 0.99758 0.93124 1.00640 1.18637 0.90995 0.85910 0.91024 1.84742 1.41217 1.12350 1.92326 0.92337 0.92103 0.90568 0.83610 0.91378 0.95064 0.93273 0.93161 0.98854 0.98903 0.92744 0.83445 0.80917 0.79541 0.71345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.14 71.98 0.66 -2.35 16 2 C 0.13 2.44 2.52 44.17 0.11 2.55 16 3 H 0.10 1.79 7.35 -2.39 -0.02 1.77 16 4 N -0.69 -17.02 5.25 -495.49 -2.60 -19.62 16 5 C 0.08 2.36 5.48 86.30 0.47 2.83 16 6 C -0.10 -3.82 5.41 30.60 0.17 -3.66 16 7 C 0.03 1.41 4.97 29.85 0.15 1.56 16 8 C -0.55 -31.30 9.11 25.60 0.23 -31.07 16 9 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 10 C 0.00 0.05 5.46 84.65 0.46 0.51 16 11 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 12 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 C -0.10 -1.75 5.07 -19.77 -0.10 -1.85 16 17 C -0.03 -0.53 8.83 22.26 0.20 -0.33 16 18 C -0.08 -1.58 6.85 36.39 0.25 -1.33 16 19 N 0.03 0.88 4.45 -46.44 -0.21 0.68 16 20 O -0.21 -6.32 18.44 18.88 0.35 -5.97 16 21 O -0.16 -4.29 18.44 18.89 0.35 -3.94 16 22 C -0.04 -0.51 9.55 22.26 0.21 -0.30 16 23 C -0.13 -1.25 9.99 22.37 0.22 -1.03 16 24 C 0.18 2.20 6.68 22.50 0.15 2.35 16 25 O -0.49 -4.29 12.64 -92.42 -1.17 -5.46 16 26 H 0.06 1.02 8.13 -2.39 -0.02 1.01 16 27 H 0.06 1.16 7.45 -2.39 -0.02 1.14 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.34 8.25 7.90 -89.69 -0.71 7.54 16 30 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 31 H 0.03 0.95 7.44 -2.39 -0.02 0.94 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.15 3.46 6.44 -2.91 -0.02 3.44 16 38 H 0.17 1.68 7.61 -2.91 -0.02 1.66 16 39 H 0.19 0.49 8.06 -2.91 -0.02 0.46 16 40 H 0.42 0.15 9.06 -74.06 -0.67 -0.53 16 Total: -1.00 -71.32 346.69 1.91 -69.41 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -0.31 Total: 6.77 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 3.18 Total: -32.11 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -2.53 Total: -75.27 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.47 Total: -15.37 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -71.32 1.91 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273468077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.736 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds