Wall clock time and date at job start Tue Mar 31 2020 07:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47292 * 2 1 4 4 H 1.09006 * 109.46246 * 55.00350 * 3 2 1 5 5 C 1.53000 * 109.47208 * 175.00024 * 3 2 1 6 6 O 1.42903 * 109.46763 * 55.00391 * 5 3 2 7 7 N 1.46499 * 109.47341 * 295.00735 * 3 2 1 8 8 C 1.34775 * 120.00335 * 84.99637 * 7 3 2 9 9 O 1.21585 * 119.99676 * 359.97438 * 8 7 3 10 10 N 1.34776 * 119.99755 * 180.02562 * 8 7 3 11 11 C 1.39951 * 119.99544 * 185.30203 * 10 8 7 12 12 C 1.38962 * 120.03521 * 33.56232 * 11 10 8 13 13 C 1.38152 * 120.06276 * 179.97438 * 12 11 10 14 14 C 1.38169 * 120.14179 * 359.97438 * 13 12 11 15 15 C 1.38906 * 120.06845 * 359.97438 * 14 13 12 16 16 O 1.35745 * 120.03249 * 180.02562 * 15 14 13 17 17 C 1.34838 * 117.00115 * 185.84775 * 16 15 14 18 18 H 1.07991 * 119.99864 * 5.39874 * 17 16 15 19 19 C 1.38649 * 119.99848 * 185.40440 * 17 16 15 20 20 N 1.31551 * 120.00502 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99747 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47141 * 59.99715 * 21 19 17 23 23 H 1.48499 * 109.47085 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47090 * 299.99882 * 21 19 17 25 25 C 1.38701 * 120.03105 * 213.53581 * 11 10 8 26 26 H 1.09006 * 109.46673 * 299.99920 * 1 2 3 27 27 H 1.08998 * 109.47007 * 59.99512 * 1 2 3 28 28 H 1.09001 * 109.46852 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46943 * 240.00806 * 2 1 3 30 30 H 1.08998 * 109.47007 * 120.00488 * 2 1 3 31 31 H 1.08993 * 109.46891 * 175.00476 * 5 3 2 32 32 H 1.09005 * 109.46957 * 295.00270 * 5 3 2 33 33 H 0.96700 * 113.99686 * 179.97438 * 6 5 3 34 34 H 0.97003 * 119.99610 * 264.99241 * 7 3 2 35 35 H 0.96997 * 120.00114 * 5.30170 * 10 8 7 36 36 H 1.07997 * 119.96802 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.92960 * 180.02562 * 13 12 11 38 38 H 1.08000 * 119.96237 * 179.97438 * 14 13 12 39 39 H 0.97002 * 120.00491 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.07444 * 359.74802 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5649 1.4443 0.1257 6 8 4.1293 0.6404 -0.9122 7 7 1.6524 2.0976 -1.2517 8 6 0.4351 2.6645 -1.3668 9 8 -0.3415 2.6318 -0.4318 10 7 0.0784 3.2667 -2.5185 11 6 -1.1395 3.9511 -2.6022 12 6 -1.6415 4.6160 -1.4901 13 6 -2.8434 5.2922 -1.5722 14 6 -3.5496 5.3102 -2.7596 15 6 -3.0525 4.6484 -3.8752 16 8 -3.7467 4.6670 -5.0415 17 6 -3.2718 3.9066 -6.0487 18 1 -2.4290 3.2527 -5.8805 19 6 -3.8655 3.9645 -7.3004 20 7 -4.8924 4.7608 -7.5052 21 14 -3.2072 2.9116 -8.6959 22 1 -3.3001 1.4779 -8.3206 23 1 -4.0102 3.1552 -9.9211 24 1 -1.7882 3.2645 -8.9552 25 6 -1.8463 3.9669 -3.7955 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.9356 2.4654 0.0367 32 1 3.8500 1.0376 1.0961 33 1 5.0951 0.5963 -0.8943 34 1 2.2719 2.1233 -1.9977 35 1 0.6658 3.2257 -3.2894 36 1 -1.0916 4.6041 -0.5607 37 1 -3.2314 5.8086 -0.7066 38 1 -4.4891 5.8394 -2.8205 39 1 -5.3080 4.8010 -8.3807 40 1 -1.4560 3.4547 -4.6625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275754068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:11 Heat of formation + Delta-G solvation = -78.902535 kcal Electronic energy + Delta-G solvation = -23406.094180 eV Core-core repulsion = 19800.946265 eV Total energy + Delta-G solvation = -3605.147915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50683 -38.90789 -37.83398 -36.46861 -35.05802 -34.16524 -32.31652 -32.03954 -29.42391 -28.89393 -28.05225 -25.26606 -23.68233 -22.56833 -21.74817 -20.71589 -20.39512 -18.64205 -17.94517 -17.66366 -17.28720 -16.20331 -15.71141 -15.23553 -14.98105 -14.72689 -14.49498 -14.19804 -14.03790 -13.89309 -13.54810 -13.33298 -12.92645 -12.65214 -12.48977 -12.27941 -11.69799 -11.56744 -11.48734 -11.12834 -11.04253 -10.99502 -10.83829 -10.70924 -10.43038 -10.42696 -9.96427 -9.55227 -9.44463 -9.02101 -8.76622 -7.64980 -7.08594 -6.41699 -4.01352 2.11995 2.45249 2.73401 3.13805 3.15052 3.17893 3.37624 3.84845 3.98697 4.27409 4.51044 4.65624 4.72731 4.97103 5.13630 5.14495 5.23434 5.32603 5.45569 5.61410 5.75512 5.88985 6.01490 6.05981 6.13924 6.19994 6.30532 6.31506 6.48558 6.54705 6.63035 6.86777 7.06165 7.15677 7.17770 7.34821 7.38863 7.47860 7.88190 8.02797 8.10591 8.71432 9.03799 9.74977 10.76454 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.003640 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.085537 B = 7690.890416 C = 8689.918944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.166 3.834 4 H 0.100 0.900 5 C 0.067 3.933 6 O -0.569 6.569 7 N -0.738 5.738 8 C 0.702 3.298 9 O -0.566 6.566 10 N -0.684 5.684 11 C 0.201 3.799 12 C -0.204 4.204 13 C -0.063 4.063 14 C -0.203 4.203 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.392 4.392 18 H 0.089 0.911 19 C 0.040 3.960 20 N -0.864 5.864 21 Si 0.939 3.061 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.271 1.271 25 C -0.259 4.259 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.380 0.620 34 H 0.399 0.601 35 H 0.402 0.598 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.270 0.730 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.919 -6.220 12.574 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.061 3.939 4 H 0.118 0.882 5 C -0.011 4.011 6 O -0.374 6.374 7 N -0.395 5.395 8 C 0.403 3.597 9 O -0.443 6.443 10 N -0.330 5.330 11 C 0.107 3.893 12 C -0.225 4.225 13 C -0.082 4.082 14 C -0.223 4.223 15 C 0.115 3.885 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.164 4.164 20 N -0.499 5.499 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.281 4.281 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.227 0.773 34 H 0.233 0.767 35 H 0.236 0.764 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.250 -6.165 13.048 21.732 hybrid contribution 1.626 -0.557 -1.349 2.185 sum 17.875 -6.722 11.698 22.396 Atomic orbital electron populations 1.21815 0.94637 1.00393 1.03461 1.21861 0.96974 0.95601 1.02306 1.20983 0.91689 0.94021 0.87253 0.88225 1.22521 0.93236 0.94489 0.90871 1.86510 1.25499 1.72277 1.53148 1.45106 1.15822 1.61186 1.17353 1.15881 0.82191 0.78215 0.83391 1.90951 1.51016 1.63711 1.38584 1.42623 1.21164 1.55644 1.13589 1.17176 0.84769 0.92664 0.94718 1.20552 0.99532 1.04138 0.98319 1.20517 0.94045 0.97468 0.96163 1.20229 1.02652 1.07644 0.91798 1.19062 0.89402 0.92298 0.87721 1.84017 1.46691 1.60099 1.17253 1.21220 1.16980 1.20303 0.88298 0.89344 1.25256 0.96061 0.97548 0.97575 1.70023 1.20379 1.35814 1.23650 0.85814 0.78741 0.79568 0.79479 1.19558 1.20281 1.19594 1.20784 0.97920 1.11074 0.98291 0.92236 0.92096 0.93881 0.91215 0.91718 0.92887 0.92068 0.77290 0.76721 0.76400 0.86226 0.86723 0.86475 0.92008 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.51 37.16 0.32 -1.61 16 2 C -0.13 -1.34 5.33 -26.73 -0.14 -1.49 16 3 C 0.17 1.62 2.66 -67.93 -0.18 1.44 16 4 H 0.10 1.07 7.58 -51.93 -0.39 0.68 16 5 C 0.07 0.43 6.79 37.16 0.25 0.68 16 6 O -0.57 -3.74 12.61 -35.23 -0.44 -4.18 16 7 N -0.74 -8.20 5.02 -58.67 -0.29 -8.50 16 8 C 0.70 10.64 6.87 -86.92 -0.60 10.04 16 9 O -0.57 -10.31 11.18 5.29 0.06 -10.25 16 10 N -0.68 -10.64 5.35 -14.24 -0.08 -10.72 16 11 C 0.20 3.92 6.27 -83.71 -0.52 3.40 16 12 C -0.20 -4.00 8.65 -39.34 -0.34 -4.34 16 13 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 14 C -0.20 -4.45 9.99 -39.36 -0.39 -4.84 16 15 C 0.17 4.17 6.64 -39.13 -0.26 3.91 16 16 O -0.18 -5.10 9.76 0.04 0.00 -5.10 16 17 C -0.39 -11.00 9.44 30.88 0.29 -10.70 16 18 H 0.09 2.29 5.30 -52.49 -0.28 2.02 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 21 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.26 -5.71 9.04 -39.21 -0.35 -6.07 16 26 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 27 H 0.06 0.98 5.64 -51.93 -0.29 0.68 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.38 0.86 9.12 45.56 0.42 1.28 16 34 H 0.40 3.68 8.40 -40.82 -0.34 3.34 16 35 H 0.40 5.05 8.83 -40.82 -0.36 4.68 16 36 H 0.12 2.29 6.43 -52.49 -0.34 1.95 16 37 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 2.78 5.72 -52.49 -0.30 2.48 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -34.17 333.75 -6.79 -40.95 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -4.37 Total: 12.13 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.43 Total: -10.19 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.39 Total: -43.92 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.38 Total: -19.54 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.17 -6.79 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275754068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.950 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds