Wall clock time and date at job start Tue Mar 31 2020 07:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47292 * 2 1 4 4 H 1.09006 * 109.46246 * 55.00350 * 3 2 1 5 5 C 1.53000 * 109.47208 * 175.00024 * 3 2 1 6 6 O 1.42903 * 109.46763 * 55.00391 * 5 3 2 7 7 N 1.46499 * 109.47341 * 295.00735 * 3 2 1 8 8 C 1.34775 * 120.00335 * 84.99637 * 7 3 2 9 9 O 1.21585 * 119.99676 * 359.97438 * 8 7 3 10 10 N 1.34776 * 119.99755 * 180.02562 * 8 7 3 11 11 C 1.39951 * 119.99544 * 185.30203 * 10 8 7 12 12 C 1.38962 * 120.03521 * 33.56232 * 11 10 8 13 13 C 1.38152 * 120.06276 * 179.97438 * 12 11 10 14 14 C 1.38169 * 120.14179 * 359.97438 * 13 12 11 15 15 C 1.38906 * 120.06845 * 359.97438 * 14 13 12 16 16 O 1.35745 * 120.03249 * 180.02562 * 15 14 13 17 17 C 1.34838 * 117.00115 * 185.84775 * 16 15 14 18 18 H 1.07991 * 119.99864 * 5.39874 * 17 16 15 19 19 C 1.38649 * 119.99848 * 185.40440 * 17 16 15 20 20 N 1.31551 * 120.00502 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99747 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47141 * 59.99715 * 21 19 17 23 23 H 1.48499 * 109.47085 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47090 * 299.99882 * 21 19 17 25 25 C 1.38701 * 120.03105 * 213.53581 * 11 10 8 26 26 H 1.09006 * 109.46673 * 299.99920 * 1 2 3 27 27 H 1.08998 * 109.47007 * 59.99512 * 1 2 3 28 28 H 1.09001 * 109.46852 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46943 * 240.00806 * 2 1 3 30 30 H 1.08998 * 109.47007 * 120.00488 * 2 1 3 31 31 H 1.08993 * 109.46891 * 175.00476 * 5 3 2 32 32 H 1.09005 * 109.46957 * 295.00270 * 5 3 2 33 33 H 0.96700 * 113.99686 * 179.97438 * 6 5 3 34 34 H 0.97003 * 119.99610 * 264.99241 * 7 3 2 35 35 H 0.96997 * 120.00114 * 5.30170 * 10 8 7 36 36 H 1.07997 * 119.96802 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.92960 * 180.02562 * 13 12 11 38 38 H 1.08000 * 119.96237 * 179.97438 * 14 13 12 39 39 H 0.97002 * 120.00491 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.07444 * 359.74802 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5649 1.4443 0.1257 6 8 4.1293 0.6404 -0.9122 7 7 1.6524 2.0976 -1.2517 8 6 0.4351 2.6645 -1.3668 9 8 -0.3415 2.6318 -0.4318 10 7 0.0784 3.2667 -2.5185 11 6 -1.1395 3.9511 -2.6022 12 6 -1.6415 4.6160 -1.4901 13 6 -2.8434 5.2922 -1.5722 14 6 -3.5496 5.3102 -2.7596 15 6 -3.0525 4.6484 -3.8752 16 8 -3.7467 4.6670 -5.0415 17 6 -3.2718 3.9066 -6.0487 18 1 -2.4290 3.2527 -5.8805 19 6 -3.8655 3.9645 -7.3004 20 7 -4.8924 4.7608 -7.5052 21 14 -3.2072 2.9116 -8.6959 22 1 -3.3001 1.4779 -8.3206 23 1 -4.0102 3.1552 -9.9211 24 1 -1.7882 3.2645 -8.9552 25 6 -1.8463 3.9669 -3.7955 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.9356 2.4654 0.0367 32 1 3.8500 1.0376 1.0961 33 1 5.0951 0.5963 -0.8943 34 1 2.2719 2.1233 -1.9977 35 1 0.6658 3.2257 -3.2894 36 1 -1.0916 4.6041 -0.5607 37 1 -3.2314 5.8086 -0.7066 38 1 -4.4891 5.8394 -2.8205 39 1 -5.3080 4.8010 -8.3807 40 1 -1.4560 3.4547 -4.6625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275754068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:10 Heat of formation + Delta-G solvation = -106.154320 kcal Electronic energy + Delta-G solvation = -23407.275906 eV Core-core repulsion = 19800.946265 eV Total energy + Delta-G solvation = -3606.329641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77556 -40.55001 -38.85697 -37.88343 -35.97808 -35.55351 -34.24119 -33.20229 -30.92264 -30.28331 -29.26020 -27.27464 -24.50384 -23.89850 -23.46542 -21.93030 -21.51739 -20.12558 -19.42074 -18.98429 -18.32484 -17.38441 -16.98887 -16.69388 -16.45175 -16.10879 -15.79009 -15.56790 -15.41841 -15.08348 -14.98950 -14.58539 -14.38928 -14.13990 -13.56992 -13.46285 -13.20770 -13.14563 -12.76974 -12.67815 -12.44458 -12.35902 -12.13280 -11.88770 -11.81302 -11.48923 -11.22704 -11.06988 -10.87088 -10.69424 -10.03634 -9.30432 -8.81104 -8.45595 -6.14397 0.48022 0.73637 1.35704 1.46354 1.51988 1.58841 2.11437 2.18732 2.86423 3.15391 3.20570 3.43237 3.51727 3.80771 4.06869 4.13978 4.26473 4.35791 4.47477 4.54262 4.55433 4.65331 4.69086 4.73579 4.79063 5.00369 5.04471 5.05766 5.11747 5.22443 5.37735 5.45360 5.53081 5.58462 5.69992 5.72241 6.00334 6.03001 6.24241 6.95687 6.98086 6.99637 7.51813 7.78925 8.77355 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.003640 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.085537 B = 7690.890416 C = 8689.918944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.158 3.842 4 H 0.090 0.910 5 C 0.077 3.923 6 O -0.586 6.586 7 N -0.720 5.720 8 C 0.701 3.299 9 O -0.598 6.598 10 N -0.678 5.678 11 C 0.209 3.791 12 C -0.197 4.197 13 C -0.051 4.051 14 C -0.217 4.217 15 C 0.136 3.864 16 O -0.227 6.227 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.021 4.021 20 N -0.920 5.920 21 Si 1.017 2.983 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.254 1.254 25 C -0.264 4.264 26 H 0.047 0.953 27 H 0.028 0.972 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.400 0.600 34 H 0.411 0.589 35 H 0.416 0.584 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.273 0.727 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.067 -7.456 13.839 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.054 3.946 4 H 0.108 0.892 5 C -0.001 4.001 6 O -0.395 6.395 7 N -0.376 5.376 8 C 0.401 3.599 9 O -0.476 6.476 10 N -0.326 5.326 11 C 0.113 3.887 12 C -0.218 4.218 13 C -0.069 4.069 14 C -0.237 4.237 15 C 0.084 3.916 16 O -0.133 6.133 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.836 3.164 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.286 4.286 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.250 0.750 34 H 0.247 0.753 35 H 0.254 0.746 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 19.503 -7.423 14.352 25.327 hybrid contribution 0.775 -0.189 -1.439 1.645 sum 20.277 -7.613 12.913 25.217 Atomic orbital electron populations 1.21751 0.96910 1.00043 1.01226 1.21812 0.94699 0.96341 1.03166 1.21198 0.94369 0.93104 0.85977 0.89156 1.22403 0.90390 0.95409 0.91918 1.86452 1.27508 1.72277 1.53248 1.45040 1.14320 1.59786 1.18426 1.16013 0.83042 0.78196 0.82600 1.90928 1.52239 1.64920 1.39531 1.42512 1.20077 1.55286 1.14706 1.17185 0.85732 0.92070 0.93689 1.20857 0.99456 1.02960 0.98546 1.20911 0.93333 0.96458 0.96213 1.20462 1.03273 1.07852 0.92121 1.19581 0.90647 0.93913 0.87427 1.83980 1.48763 1.61836 1.18710 1.21741 1.17522 1.20940 0.88818 0.88238 1.26564 0.96129 0.98926 1.00233 1.70173 1.22526 1.38486 1.24594 0.84674 0.78707 0.77636 0.75362 1.18495 1.19643 1.17811 1.20799 0.97556 1.10929 0.99316 0.93408 0.95245 0.93322 0.91636 0.89444 0.91816 0.89802 0.74958 0.75331 0.74643 0.85031 0.82870 0.86339 0.91805 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.51 71.98 0.61 -3.01 16 2 C -0.12 -2.26 5.33 30.60 0.16 -2.09 16 3 C 0.16 2.67 2.66 44.99 0.12 2.79 16 4 H 0.09 1.75 7.58 -2.38 -0.02 1.73 16 5 C 0.08 0.70 6.79 71.98 0.49 1.19 16 6 O -0.59 -5.56 12.61 -148.98 -1.88 -7.44 16 7 N -0.72 -14.36 5.02 -457.81 -2.30 -16.66 16 8 C 0.70 20.10 6.87 179.06 1.23 21.33 16 9 O -0.60 -21.05 11.18 -3.98 -0.04 -21.09 16 10 N -0.68 -20.12 5.35 -317.23 -1.70 -21.82 16 11 C 0.21 7.99 6.27 38.13 0.24 8.23 16 12 C -0.20 -7.39 8.65 22.42 0.19 -7.19 16 13 C -0.05 -1.87 10.03 22.23 0.22 -1.65 16 14 C -0.22 -9.64 9.99 22.41 0.22 -9.41 16 15 C 0.14 6.91 6.64 22.56 0.15 7.06 16 16 O -0.23 -13.74 9.76 -22.76 -0.22 -13.97 16 17 C -0.41 -24.17 9.44 67.92 0.64 -23.52 16 18 H 0.10 5.31 5.30 -2.91 -0.02 5.30 16 19 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 20 N -0.92 -56.58 13.67 21.61 0.30 -56.28 16 21 Si 1.02 42.67 29.55 68.60 2.03 44.70 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 25 C -0.26 -11.81 9.04 22.51 0.20 -11.61 16 26 H 0.05 1.30 7.84 -2.38 -0.02 1.28 16 27 H 0.03 0.92 5.64 -2.39 -0.01 0.91 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.30 7.73 -2.38 -0.02 1.28 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.40 0.30 9.12 -74.06 -0.68 -0.37 16 34 H 0.41 6.44 8.40 -92.71 -0.78 5.66 16 35 H 0.42 9.75 8.83 -92.71 -0.82 8.93 16 36 H 0.13 4.72 6.43 -2.91 -0.02 4.70 16 37 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.13 5.58 5.72 -2.91 -0.02 5.57 16 Total: -1.00 -77.90 333.75 -0.03 -77.92 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -1.17 Total: 33.25 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.95 Total: -18.61 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -3.70 Total: -94.76 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -2.15 Total: -42.50 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -77.90 -0.03 -77.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275754068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.230 kcal (2) G-P(sol) polarization free energy of solvation -77.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds