Wall clock time and date at job start Tue Mar 31 2020 07:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00208 * 2 1 4 4 H 1.09001 * 109.46924 * 29.99900 * 3 2 1 5 5 C 1.53000 * 109.47377 * 270.00297 * 3 2 1 6 6 C 1.52999 * 109.47359 * 150.00368 * 3 2 1 7 7 N 1.46503 * 109.46944 * 300.00068 * 6 3 2 8 8 C 1.34775 * 120.00110 * 180.02562 * 7 6 3 9 9 O 1.21589 * 119.99719 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99946 * 180.02562 * 8 7 6 11 11 C 1.39948 * 119.99749 * 175.49415 * 10 8 7 12 12 C 1.38959 * 120.02926 * 214.84819 * 11 10 8 13 13 C 1.38160 * 120.06342 * 179.74839 * 12 11 10 14 14 C 1.38167 * 120.13660 * 0.54320 * 13 12 11 15 15 C 1.38908 * 120.07044 * 359.71129 * 14 13 12 16 16 O 1.35751 * 120.03393 * 179.97438 * 15 14 13 17 17 C 1.34839 * 117.00080 * 5.36853 * 16 15 14 18 18 H 1.07994 * 119.99519 * 354.96177 * 17 16 15 19 19 C 1.38650 * 120.00237 * 174.96083 * 17 16 15 20 20 N 1.31554 * 120.00085 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99687 * 0.02562 * 19 17 16 22 22 H 1.48489 * 109.47258 * 89.99843 * 21 19 17 23 23 H 1.48505 * 109.46786 * 210.00016 * 21 19 17 24 24 H 1.48503 * 109.47056 * 329.99632 * 21 19 17 25 25 C 1.38706 * 120.03661 * 35.12114 * 11 10 8 26 26 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46904 * 300.00046 * 1 2 3 28 28 H 1.09003 * 109.46845 * 59.99296 * 1 2 3 29 29 H 1.09007 * 109.47227 * 300.00246 * 5 3 2 30 30 H 1.08991 * 109.47454 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.46967 * 59.99664 * 5 3 2 32 32 H 1.08999 * 109.46996 * 59.99717 * 6 3 2 33 33 H 1.08997 * 109.47503 * 180.02562 * 6 3 2 34 34 H 0.96998 * 119.99912 * 0.02562 * 7 6 3 35 35 H 0.97000 * 119.99884 * 355.48485 * 10 8 7 36 36 H 1.07997 * 119.97042 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.93067 * 180.27519 * 13 12 11 38 38 H 1.08007 * 119.96483 * 179.72518 * 14 13 12 39 39 H 0.97001 * 119.99332 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.06919 * 359.95735 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3590 1.2632 0.7212 7 7 3.1604 0.8171 2.1024 8 6 4.2162 0.7038 2.9324 9 8 5.3336 0.9715 2.5346 10 7 4.0336 0.2929 4.2029 11 6 5.1382 0.0847 5.0366 12 6 5.1155 -0.9363 5.9790 13 6 6.2077 -1.1458 6.7988 14 6 7.3209 -0.3343 6.6922 15 6 7.3475 0.6912 5.7558 16 8 8.4415 1.4884 5.6520 17 6 9.5096 1.1634 6.4081 18 1 9.4421 0.3522 7.1177 19 6 10.6946 1.8708 6.2745 20 7 11.7365 1.5541 7.0125 21 14 10.8110 3.2746 5.0474 22 1 10.4172 4.5443 5.7090 23 1 12.2072 3.3859 4.5538 24 1 9.9013 3.0093 3.9040 25 6 6.2544 0.9007 4.9269 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 2.8829 1.0775 -1.9564 30 1 2.6606 2.7673 -1.4425 31 1 1.2569 1.8015 -1.9563 32 1 4.0242 0.5693 0.2073 33 1 3.8022 2.2590 0.7216 34 1 2.2691 0.6032 2.4196 35 1 3.1365 0.1416 4.5395 36 1 4.2448 -1.5689 6.0682 37 1 6.1895 -1.9427 7.5275 38 1 8.1714 -0.4978 7.3376 39 1 12.5654 2.0493 6.9192 40 1 6.2729 1.6972 4.1978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277037758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:22 Heat of formation + Delta-G solvation = -68.114373 kcal Electronic energy + Delta-G solvation = -22916.191291 eV Core-core repulsion = 19311.511186 eV Total energy + Delta-G solvation = -3604.680105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39831 -39.06389 -38.54689 -36.73468 -34.80234 -34.08176 -32.30083 -32.00906 -29.56106 -28.58748 -27.22880 -26.07785 -25.10762 -22.54545 -21.80923 -21.29034 -20.55587 -18.42878 -18.06390 -17.38391 -17.28477 -16.36325 -15.58833 -15.40748 -15.27114 -15.12142 -14.77895 -14.23689 -14.09206 -13.86567 -13.58581 -13.34463 -13.02087 -12.87471 -12.74329 -12.50525 -12.28615 -12.21690 -11.83824 -11.56996 -11.16662 -11.15016 -10.92058 -10.79020 -10.21849 -10.12834 -9.90302 -9.66455 -9.25841 -9.13019 -8.78968 -7.70429 -7.23389 -6.33870 -4.00131 2.07582 2.30964 2.65645 3.26280 3.30371 3.32922 3.36792 3.52368 4.15187 4.33420 4.36926 4.57158 4.60691 4.72212 4.87706 4.93514 4.98820 5.19481 5.20714 5.26059 5.33689 5.41953 5.61818 5.63184 5.75633 5.79892 6.13507 6.19422 6.30007 6.39103 6.49449 6.72867 6.77440 7.00547 7.16811 7.23264 7.40842 7.67808 7.88883 8.03423 8.11499 8.67371 9.02076 9.66140 10.73689 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.003284 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.399037 B = 8522.987402 C = 9779.391627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.381 6.381 3 C 0.074 3.926 4 H 0.067 0.933 5 C -0.173 4.173 6 C 0.142 3.858 7 N -0.742 5.742 8 C 0.699 3.301 9 O -0.563 6.563 10 N -0.682 5.682 11 C 0.191 3.809 12 C -0.228 4.228 13 C -0.060 4.060 14 C -0.234 4.234 15 C 0.173 3.827 16 O -0.215 6.215 17 C -0.387 4.387 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.881 5.881 21 Si 0.902 3.098 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.257 1.257 25 C -0.186 4.186 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.395 0.605 35 H 0.402 0.598 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.207 -1.362 -11.668 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.016 3.984 4 H 0.085 0.915 5 C -0.231 4.231 6 C 0.017 3.983 7 N -0.398 5.398 8 C 0.400 3.600 9 O -0.438 6.438 10 N -0.329 5.329 11 C 0.098 3.902 12 C -0.250 4.250 13 C -0.079 4.079 14 C -0.254 4.254 15 C 0.120 3.880 16 O -0.120 6.120 17 C -0.463 4.463 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.520 5.520 21 Si 0.728 3.272 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.181 1.181 25 C -0.208 4.208 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.229 0.771 35 H 0.236 0.764 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.783 -1.014 -12.195 25.861 hybrid contribution -0.923 0.478 -0.075 1.042 sum -23.706 -0.536 -12.270 26.698 Atomic orbital electron populations 1.22816 0.81065 1.02914 0.99943 1.88005 1.19590 1.27300 1.95067 1.22421 0.94530 0.85165 0.96328 0.91466 1.22203 1.02818 1.02282 0.95769 1.21348 0.95564 1.01165 0.80210 1.44922 1.09036 1.73849 1.12029 1.15945 0.84750 0.78708 0.80644 1.91009 1.22245 1.54818 1.75764 1.42442 1.08868 1.71119 1.10451 1.16933 0.87059 0.94656 0.91597 1.20317 1.00688 1.00918 1.03041 1.20537 0.92337 0.97694 0.97329 1.21293 1.00643 0.99759 1.03672 1.18872 0.87503 0.89256 0.92323 1.83586 1.20378 1.47283 1.60704 1.20787 0.87801 1.19430 1.18262 0.87546 1.24446 0.93610 0.98420 0.97453 1.69650 1.02326 1.40791 1.39191 0.86212 0.77534 0.81448 0.82020 1.19933 1.20849 1.18057 1.20193 0.93277 1.03873 1.03448 0.89516 0.93986 0.94045 0.91158 0.90994 0.91998 0.90557 0.89997 0.77124 0.76392 0.87255 0.86774 0.84874 0.91137 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.18 10.09 -35.23 -0.36 -3.54 16 3 C 0.07 0.53 2.81 -26.73 -0.08 0.46 16 4 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 5 C -0.17 -1.07 9.53 37.16 0.35 -0.71 16 6 C 0.14 1.44 5.37 -4.04 -0.02 1.41 16 7 N -0.74 -8.16 5.45 -65.23 -0.36 -8.51 16 8 C 0.70 10.98 8.41 -86.92 -0.73 10.25 16 9 O -0.56 -11.70 13.78 5.29 0.07 -11.63 16 10 N -0.68 -9.81 5.34 -14.24 -0.08 -9.89 16 11 C 0.19 3.55 6.30 -83.71 -0.53 3.02 16 12 C -0.23 -3.88 9.96 -39.34 -0.39 -4.27 16 13 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 14 C -0.23 -5.23 9.17 -39.36 -0.36 -5.59 16 15 C 0.17 4.29 6.64 -39.14 -0.26 4.03 16 16 O -0.21 -6.03 8.58 0.02 0.00 -6.03 16 17 C -0.39 -11.33 9.95 30.88 0.31 -11.02 16 18 H 0.11 3.14 5.43 -52.49 -0.29 2.85 16 19 C 0.06 1.85 5.49 -17.52 -0.10 1.75 16 20 N -0.88 -26.15 13.96 55.48 0.77 -25.37 16 21 Si 0.90 22.74 28.62 -169.99 -4.86 17.87 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.26 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.19 -4.20 8.64 -39.21 -0.34 -4.54 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.17 8.08 -51.93 -0.42 -0.25 16 28 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 3.15 8.37 -40.82 -0.34 2.81 16 35 H 0.40 4.02 8.84 -40.82 -0.36 3.66 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.13 3.08 5.63 -52.48 -0.30 2.79 16 39 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.14 3.23 6.22 -52.49 -0.33 2.90 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -34.94 341.49 -6.45 -41.39 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.35 Total: 6.01 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.45 Total: -5.46 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.34 Total: -43.77 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.28 Total: -21.19 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.86 Total: 17.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.94 -6.45 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277037758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.723 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds