Wall clock time and date at job start Tue Mar 31 2020 07:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00208 * 2 1 4 4 H 1.09001 * 109.46924 * 29.99900 * 3 2 1 5 5 C 1.53000 * 109.47377 * 270.00297 * 3 2 1 6 6 C 1.52999 * 109.47359 * 150.00368 * 3 2 1 7 7 N 1.46503 * 109.46944 * 300.00068 * 6 3 2 8 8 C 1.34775 * 120.00110 * 180.02562 * 7 6 3 9 9 O 1.21589 * 119.99719 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99946 * 180.02562 * 8 7 6 11 11 C 1.39948 * 119.99749 * 175.49415 * 10 8 7 12 12 C 1.38959 * 120.02926 * 214.84819 * 11 10 8 13 13 C 1.38160 * 120.06342 * 179.74839 * 12 11 10 14 14 C 1.38167 * 120.13660 * 0.54320 * 13 12 11 15 15 C 1.38908 * 120.07044 * 359.71129 * 14 13 12 16 16 O 1.35751 * 120.03393 * 179.97438 * 15 14 13 17 17 C 1.34839 * 117.00080 * 5.36853 * 16 15 14 18 18 H 1.07994 * 119.99519 * 354.96177 * 17 16 15 19 19 C 1.38650 * 120.00237 * 174.96083 * 17 16 15 20 20 N 1.31554 * 120.00085 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99687 * 0.02562 * 19 17 16 22 22 H 1.48489 * 109.47258 * 89.99843 * 21 19 17 23 23 H 1.48505 * 109.46786 * 210.00016 * 21 19 17 24 24 H 1.48503 * 109.47056 * 329.99632 * 21 19 17 25 25 C 1.38706 * 120.03661 * 35.12114 * 11 10 8 26 26 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46904 * 300.00046 * 1 2 3 28 28 H 1.09003 * 109.46845 * 59.99296 * 1 2 3 29 29 H 1.09007 * 109.47227 * 300.00246 * 5 3 2 30 30 H 1.08991 * 109.47454 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.46967 * 59.99664 * 5 3 2 32 32 H 1.08999 * 109.46996 * 59.99717 * 6 3 2 33 33 H 1.08997 * 109.47503 * 180.02562 * 6 3 2 34 34 H 0.96998 * 119.99912 * 0.02562 * 7 6 3 35 35 H 0.97000 * 119.99884 * 355.48485 * 10 8 7 36 36 H 1.07997 * 119.97042 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.93067 * 180.27519 * 13 12 11 38 38 H 1.08007 * 119.96483 * 179.72518 * 14 13 12 39 39 H 0.97001 * 119.99332 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.06919 * 359.95735 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3590 1.2632 0.7212 7 7 3.1604 0.8171 2.1024 8 6 4.2162 0.7038 2.9324 9 8 5.3336 0.9715 2.5346 10 7 4.0336 0.2929 4.2029 11 6 5.1382 0.0847 5.0366 12 6 5.1155 -0.9363 5.9790 13 6 6.2077 -1.1458 6.7988 14 6 7.3209 -0.3343 6.6922 15 6 7.3475 0.6912 5.7558 16 8 8.4415 1.4884 5.6520 17 6 9.5096 1.1634 6.4081 18 1 9.4421 0.3522 7.1177 19 6 10.6946 1.8708 6.2745 20 7 11.7365 1.5541 7.0125 21 14 10.8110 3.2746 5.0474 22 1 10.4172 4.5443 5.7090 23 1 12.2072 3.3859 4.5538 24 1 9.9013 3.0093 3.9040 25 6 6.2544 0.9007 4.9269 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 2.8829 1.0775 -1.9564 30 1 2.6606 2.7673 -1.4425 31 1 1.2569 1.8015 -1.9563 32 1 4.0242 0.5693 0.2073 33 1 3.8022 2.2590 0.7216 34 1 2.2691 0.6032 2.4196 35 1 3.1365 0.1416 4.5395 36 1 4.2448 -1.5689 6.0682 37 1 6.1895 -1.9427 7.5275 38 1 8.1714 -0.4978 7.3376 39 1 12.5654 2.0493 6.9192 40 1 6.2729 1.6972 4.1978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277037758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:22 Heat of formation + Delta-G solvation = -94.866284 kcal Electronic energy + Delta-G solvation = -22917.351341 eV Core-core repulsion = 19311.511186 eV Total energy + Delta-G solvation = -3605.840155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73164 -40.59280 -39.41865 -38.34965 -35.82104 -35.54918 -34.43213 -32.75151 -31.23197 -30.07207 -27.74447 -27.24942 -26.80653 -24.00214 -22.95178 -22.48534 -21.93434 -19.92082 -19.71121 -19.10383 -17.88092 -17.60246 -16.90288 -16.63341 -16.52986 -16.26308 -16.05218 -15.70269 -15.65620 -15.41196 -14.97763 -14.47789 -14.33032 -14.20403 -14.01277 -13.65788 -13.37598 -13.21640 -13.03558 -12.95869 -12.73104 -12.49629 -12.30593 -12.06092 -11.72709 -11.59893 -11.34307 -11.02265 -10.86316 -10.62469 -10.21248 -9.34963 -8.88584 -8.50569 -6.22244 0.45468 0.66990 1.27685 1.32096 1.49576 1.51765 2.04207 2.27667 2.75557 2.77259 2.98141 3.12293 3.34219 3.75188 4.02414 4.13894 4.19431 4.37433 4.41452 4.52446 4.54681 4.59677 4.65074 4.69210 4.74058 4.79430 4.92984 4.94044 4.97205 5.24465 5.35853 5.36761 5.41159 5.46290 5.69701 5.80926 5.91825 5.96662 6.24462 6.25000 6.84602 6.98508 7.47658 7.61619 8.60969 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.003284 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.399037 B = 8522.987402 C = 9779.391627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.083 3.917 4 H 0.090 0.910 5 C -0.172 4.172 6 C 0.137 3.863 7 N -0.717 5.717 8 C 0.694 3.306 9 O -0.618 6.618 10 N -0.664 5.664 11 C 0.200 3.800 12 C -0.195 4.195 13 C -0.051 4.051 14 C -0.250 4.250 15 C 0.134 3.866 16 O -0.250 6.250 17 C -0.397 4.397 18 H 0.088 0.912 19 C 0.014 3.986 20 N -0.920 5.920 21 Si 0.963 3.037 22 H -0.262 1.262 23 H -0.263 1.263 24 H -0.275 1.275 25 C -0.203 4.203 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.414 0.586 35 H 0.428 0.572 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.114 0.886 39 H 0.285 0.715 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.257 -2.181 -12.217 30.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.025 3.975 4 H 0.108 0.892 5 C -0.230 4.230 6 C 0.013 3.987 7 N -0.374 5.374 8 C 0.394 3.606 9 O -0.498 6.498 10 N -0.314 5.314 11 C 0.104 3.896 12 C -0.215 4.215 13 C -0.070 4.070 14 C -0.270 4.270 15 C 0.085 3.915 16 O -0.157 6.157 17 C -0.474 4.474 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.561 5.561 21 Si 0.786 3.214 22 H -0.187 1.187 23 H -0.187 1.187 24 H -0.201 1.201 25 C -0.225 4.225 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.251 0.749 35 H 0.267 0.733 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.961 -1.857 -12.744 29.879 hybrid contribution -0.036 0.535 0.051 0.538 sum -26.997 -1.322 -12.693 29.861 Atomic orbital electron populations 1.22999 0.79396 1.03739 1.01159 1.87971 1.21451 1.27765 1.95238 1.22348 0.93051 0.85488 0.96630 0.89195 1.22202 1.03382 1.02291 0.95086 1.21463 0.97380 1.00260 0.79603 1.44735 1.08769 1.72193 1.11695 1.16205 0.84830 0.78340 0.81196 1.90996 1.24865 1.57100 1.76814 1.42203 1.09065 1.70484 1.09621 1.17066 0.86829 0.93770 0.91899 1.20895 1.01477 0.99221 0.99939 1.21009 0.90871 0.97303 0.97796 1.21353 1.01924 1.00401 1.03303 1.19371 0.87382 0.90589 0.94206 1.83533 1.21130 1.49218 1.61850 1.20781 0.88900 1.19280 1.18395 0.89425 1.25172 0.93298 1.00771 0.99238 1.69713 1.02975 1.42443 1.40970 0.85329 0.77877 0.78984 0.79204 1.18716 1.18729 1.20056 1.20229 0.94481 1.04707 1.03105 0.88994 0.92459 0.93129 0.92428 0.90262 0.90566 0.92798 0.90340 0.74860 0.73266 0.81703 0.82563 0.86819 0.90548 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.40 -5.74 10.09 -148.98 -1.50 -7.24 16 3 C 0.08 1.01 2.81 30.59 0.09 1.09 16 4 H 0.09 0.71 7.79 -2.39 -0.02 0.69 16 5 C -0.17 -1.81 9.53 71.98 0.69 -1.12 16 6 C 0.14 2.64 5.37 86.38 0.46 3.10 16 7 N -0.72 -14.20 5.45 -478.53 -2.61 -16.81 16 8 C 0.69 20.78 8.41 179.05 1.51 22.29 16 9 O -0.62 -26.11 13.78 -3.99 -0.06 -26.16 16 10 N -0.66 -17.03 5.34 -317.23 -1.70 -18.72 16 11 C 0.20 6.92 6.30 38.13 0.24 7.16 16 12 C -0.19 -5.67 9.96 22.42 0.22 -5.44 16 13 C -0.05 -1.72 10.03 22.23 0.22 -1.50 16 14 C -0.25 -11.34 9.17 22.41 0.21 -11.13 16 15 C 0.13 6.91 6.64 22.56 0.15 7.06 16 16 O -0.25 -14.87 8.58 -22.84 -0.20 -15.07 16 17 C -0.40 -24.66 9.95 67.92 0.68 -23.99 16 18 H 0.09 5.56 5.43 -2.91 -0.02 5.55 16 19 C 0.01 0.83 5.49 84.83 0.47 1.30 16 20 N -0.92 -56.69 13.96 21.61 0.30 -56.39 16 21 Si 0.96 48.80 28.62 68.60 1.96 50.77 16 22 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 25 C -0.20 -9.34 8.64 22.51 0.19 -9.15 16 26 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.25 8.08 -2.39 -0.02 0.23 16 28 H 0.05 0.28 7.87 -2.39 -0.02 0.26 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.60 7.87 -2.39 -0.02 0.58 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.41 5.10 8.37 -92.71 -0.78 4.32 16 35 H 0.43 6.44 8.84 -92.71 -0.82 5.62 16 36 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 37 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.11 5.56 5.63 -2.91 -0.02 5.54 16 39 H 0.28 16.08 8.31 -92.71 -0.77 15.31 16 40 H 0.11 5.66 6.22 -2.91 -0.02 5.64 16 Total: -1.00 -82.40 341.49 2.04 -80.36 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.51 Total: 18.18 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 6.34 Total: -8.92 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -4.00 Total: -91.92 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -1.75 Total: -48.47 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.96 Total: 50.77 kcal Total: -82.40 2.04 -80.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277037758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.506 kcal (2) G-P(sol) polarization free energy of solvation -82.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds