Wall clock time and date at job start Tue Mar 31 2020 07:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47450 * 2 1 4 4 C 1.53007 * 109.47444 * 239.99620 * 2 1 3 5 5 C 1.50693 * 109.46734 * 65.00081 * 4 2 1 6 6 N 1.34779 * 119.99899 * 179.72826 * 5 4 2 7 7 O 1.21282 * 120.00618 * 0.02562 * 5 4 2 8 8 C 1.50701 * 109.46898 * 120.00039 * 2 1 3 9 9 O 1.21280 * 120.00480 * 91.86354 * 8 2 1 10 10 N 1.34784 * 119.99882 * 271.86622 * 8 2 1 11 11 C 1.46503 * 119.99697 * 4.94345 * 10 8 2 12 12 C 1.50698 * 109.47043 * 84.17846 * 11 10 8 13 13 H 1.07997 * 120.00095 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99799 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00458 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99823 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47263 * 90.00005 * 16 14 12 18 18 H 1.48497 * 109.47280 * 209.99951 * 16 14 12 19 19 H 1.48497 * 109.47415 * 329.99954 * 16 14 12 20 20 C 1.46491 * 120.00182 * 184.94566 * 10 8 2 21 21 C 1.50706 * 109.47371 * 85.22571 * 20 10 8 22 22 C 1.34515 * 125.78255 * 94.96170 * 21 20 10 23 23 C 1.41388 * 106.83292 * 180.02562 * 22 21 20 24 24 C 1.34513 * 106.84555 * 0.02562 * 23 22 21 25 25 O 1.34302 * 125.79235 * 274.65788 * 21 20 10 26 26 H 1.08997 * 109.47130 * 181.96907 * 1 2 3 27 27 H 1.08996 * 109.46982 * 301.97468 * 1 2 3 28 28 H 1.09003 * 109.46788 * 61.97169 * 1 2 3 29 29 H 1.09003 * 109.46626 * 305.00125 * 4 2 1 30 30 H 1.09001 * 109.46940 * 185.00640 * 4 2 1 31 31 H 0.97000 * 120.00310 * 180.28338 * 6 5 4 32 32 H 0.97005 * 120.00015 * 0.26997 * 6 5 4 33 33 H 1.09000 * 109.46698 * 204.17666 * 11 10 8 34 34 H 1.09002 * 109.47165 * 324.17430 * 11 10 8 35 35 H 0.97000 * 120.00252 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.47437 * 205.22852 * 20 10 8 37 37 H 1.09000 * 109.47298 * 325.22926 * 20 10 8 38 38 H 1.07994 * 126.58667 * 0.04606 * 22 21 20 39 39 H 1.08008 * 126.57590 * 179.97438 * 23 22 21 40 40 H 1.07995 * 125.79064 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6415 0.0569 -2.4765 6 7 1.9898 -0.3890 -3.6998 7 8 1.0118 1.0873 -2.3633 8 6 2.0323 -0.7104 1.2305 9 8 2.2666 -1.8997 1.1910 10 7 2.2211 -0.0241 2.3750 11 6 1.8363 1.3873 2.4547 12 6 0.3693 1.4902 2.7837 13 1 -0.2177 0.5940 2.9202 14 6 -0.2233 2.7286 2.9114 15 7 0.4916 3.8200 2.7456 16 14 -2.0419 2.8562 3.3185 17 1 -2.2176 2.8956 4.7925 18 1 -2.5972 4.0968 2.7205 19 1 -2.7567 1.6776 2.7662 20 6 2.8109 -0.6894 3.5393 21 6 4.3138 -0.6410 3.4376 22 6 5.1110 0.2829 4.0035 23 6 6.4391 -0.0519 3.6524 24 6 6.3738 -1.1600 2.8926 25 8 5.0846 -1.5162 2.7716 26 1 -0.3633 -1.0270 0.0353 27 1 -0.3633 0.5442 0.8717 28 1 -0.3633 0.4829 -0.9072 29 1 1.6054 -1.7199 -1.2950 30 1 3.1264 -0.7996 -1.2054 31 1 1.7368 0.1141 -4.4896 32 1 2.4937 -1.2129 -3.7904 33 1 2.4188 1.8791 3.2337 34 1 2.0288 1.8710 1.4970 35 1 0.0747 4.6912 2.8359 36 1 2.4917 -0.1807 4.4489 37 1 2.4821 -1.7281 3.5695 38 1 4.7971 1.1196 4.6099 39 1 7.3342 0.4804 3.9387 40 1 7.2158 -1.6787 2.4587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283174541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:40 Heat of formation + Delta-G solvation = -65.310660 kcal Electronic energy + Delta-G solvation = -24393.221183 eV Core-core repulsion = 20788.662655 eV Total energy + Delta-G solvation = -3604.558527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.19671 -39.80512 -38.73450 -35.20168 -33.73155 -33.51896 -32.72199 -32.49539 -30.29208 -27.54223 -27.14688 -25.75553 -23.19523 -22.67126 -21.36289 -20.52629 -19.93103 -18.17001 -17.34867 -17.07366 -16.79585 -16.33482 -15.97868 -15.71466 -15.09799 -14.97210 -14.57304 -14.38015 -13.76228 -13.53596 -12.87256 -12.81638 -12.48696 -12.45282 -12.39939 -12.19537 -11.96023 -11.49721 -11.34734 -11.29743 -10.91285 -10.80150 -10.56518 -10.24440 -10.08806 -9.75671 -9.66851 -9.60099 -9.52284 -8.97755 -8.51896 -8.17076 -7.83597 -6.15889 -4.21611 2.01149 2.85688 2.88320 3.22143 3.25936 3.34003 3.36549 3.53934 3.60667 4.10152 4.36890 5.00336 5.04521 5.17481 5.27235 5.32825 5.38172 5.44448 5.55593 5.77570 5.95715 6.03365 6.08980 6.15539 6.22887 6.26510 6.40445 6.63234 6.72134 6.78206 6.81096 6.89080 7.22651 7.29279 7.41933 7.45808 7.53226 7.78185 8.06589 8.25794 8.44849 8.79728 8.97959 9.43975 10.91149 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.007374 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.989977 B = 3796.125678 C = 6100.278989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.084 4.084 3 H 0.104 0.896 4 C -0.125 4.125 5 C 0.516 3.484 6 N -0.863 5.863 7 O -0.529 6.529 8 C 0.526 3.474 9 O -0.569 6.569 10 N -0.593 5.593 11 C 0.237 3.763 12 C -0.536 4.536 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.195 3.805 21 C -0.013 4.013 22 C -0.205 4.205 23 C -0.216 4.216 24 C -0.054 4.054 25 O -0.165 6.165 26 H 0.039 0.961 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.399 0.601 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.265 0.735 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 -8.344 -5.163 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.105 4.105 3 H 0.122 0.878 4 C -0.165 4.165 5 C 0.301 3.699 6 N -0.427 5.427 7 O -0.404 6.404 8 C 0.315 3.685 9 O -0.450 6.450 10 N -0.323 5.323 11 C 0.117 3.883 12 C -0.574 4.574 13 H 0.083 0.917 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.196 1.196 20 C 0.071 3.929 21 C -0.065 4.065 22 C -0.225 4.225 23 C -0.235 4.235 24 C -0.122 4.122 25 O -0.061 6.061 26 H 0.058 0.942 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.227 0.773 32 H 0.227 0.773 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 7.699 -8.327 -5.045 12.413 hybrid contribution -0.455 0.315 -0.075 0.559 sum 7.244 -8.012 -5.121 11.954 Atomic orbital electron populations 1.22052 0.91905 1.01354 1.05963 1.20879 0.99133 1.00652 0.89854 0.87836 1.21515 1.02698 1.00369 0.91938 1.20795 0.78462 0.85497 0.85151 1.43922 1.60855 1.29582 1.08351 1.90768 1.38908 1.24191 1.86524 1.20528 0.76325 0.86712 0.84914 1.90586 1.53611 1.15449 1.85319 1.48300 1.59115 1.14446 1.10396 1.19538 0.95732 0.74191 0.98802 1.21408 0.94138 0.92627 1.49275 0.91745 1.24911 0.98293 0.95535 0.94813 1.69916 1.36243 0.97840 1.48428 0.86558 0.84949 0.77887 0.78506 1.20593 1.21047 1.19594 1.19714 0.82029 1.00304 0.90849 1.23281 0.94712 0.91218 0.97276 1.21661 0.92504 1.01969 1.06390 1.21784 0.98237 0.99499 1.04013 1.23954 0.84833 0.99363 1.04094 1.84114 1.16722 1.46530 1.58684 0.94215 0.88143 0.91028 0.88199 0.89190 0.77280 0.77313 0.94465 0.94061 0.92478 0.87011 0.89383 0.83415 0.83905 0.78752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.90 37.16 0.33 -2.79 16 2 C -0.08 -1.63 1.70 -91.77 -0.16 -1.78 16 3 H 0.10 2.21 5.90 -51.93 -0.31 1.91 16 4 C -0.12 -1.93 4.66 -27.88 -0.13 -2.06 16 5 C 0.52 7.75 7.80 -10.99 -0.09 7.67 16 6 N -0.86 -8.56 8.87 31.22 0.28 -8.29 16 7 O -0.53 -10.30 14.81 5.56 0.08 -10.22 16 8 C 0.53 11.01 6.65 -10.98 -0.07 10.94 16 9 O -0.57 -12.54 15.87 5.56 0.09 -12.46 16 10 N -0.59 -12.40 2.47 -176.43 -0.44 -12.83 16 11 C 0.24 5.54 4.95 -5.19 -0.03 5.52 16 12 C -0.54 -13.51 6.89 -34.44 -0.24 -13.75 16 13 H 0.06 1.64 7.43 -52.49 -0.39 1.25 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 16 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.19 3.59 5.90 -5.20 -0.03 3.56 16 21 C -0.01 -0.23 6.87 -35.62 -0.24 -0.48 16 22 C -0.21 -3.35 10.81 -39.70 -0.43 -3.78 16 23 C -0.22 -3.08 10.91 -39.70 -0.43 -3.51 16 24 C -0.05 -0.76 12.09 29.42 0.36 -0.40 16 25 O -0.17 -2.93 10.65 5.72 0.06 -2.87 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 2.27 4.97 -51.93 -0.26 2.01 16 28 H 0.07 1.44 5.92 -51.93 -0.31 1.13 16 29 H 0.10 1.45 8.02 -51.93 -0.42 1.03 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.40 3.45 8.93 -40.82 -0.36 3.09 16 32 H 0.40 2.71 8.83 -40.82 -0.36 2.35 16 33 H 0.04 0.91 8.03 -51.93 -0.42 0.49 16 34 H 0.04 1.04 5.99 -51.93 -0.31 0.73 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.11 1.90 8.04 -51.93 -0.42 1.48 16 37 H 0.09 1.61 7.50 -51.93 -0.39 1.22 16 38 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 40 H 0.20 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -32.20 338.74 -5.55 -37.75 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.19 Total: 11.13 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.26 Total: 0.82 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.58 Total: -44.77 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.23 Total: -25.54 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.20 -5.55 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283174541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.565 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds