Wall clock time and date at job start Tue Mar 31 2020 07:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47450 * 2 1 4 4 C 1.53007 * 109.47444 * 239.99620 * 2 1 3 5 5 C 1.50693 * 109.46734 * 65.00081 * 4 2 1 6 6 N 1.34779 * 119.99899 * 179.72826 * 5 4 2 7 7 O 1.21282 * 120.00618 * 0.02562 * 5 4 2 8 8 C 1.50701 * 109.46898 * 120.00039 * 2 1 3 9 9 O 1.21280 * 120.00480 * 91.86354 * 8 2 1 10 10 N 1.34784 * 119.99882 * 271.86622 * 8 2 1 11 11 C 1.46503 * 119.99697 * 4.94345 * 10 8 2 12 12 C 1.50698 * 109.47043 * 84.17846 * 11 10 8 13 13 H 1.07997 * 120.00095 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99799 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00458 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99823 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47263 * 90.00005 * 16 14 12 18 18 H 1.48497 * 109.47280 * 209.99951 * 16 14 12 19 19 H 1.48497 * 109.47415 * 329.99954 * 16 14 12 20 20 C 1.46491 * 120.00182 * 184.94566 * 10 8 2 21 21 C 1.50706 * 109.47371 * 85.22571 * 20 10 8 22 22 C 1.34515 * 125.78255 * 94.96170 * 21 20 10 23 23 C 1.41388 * 106.83292 * 180.02562 * 22 21 20 24 24 C 1.34513 * 106.84555 * 0.02562 * 23 22 21 25 25 O 1.34302 * 125.79235 * 274.65788 * 21 20 10 26 26 H 1.08997 * 109.47130 * 181.96907 * 1 2 3 27 27 H 1.08996 * 109.46982 * 301.97468 * 1 2 3 28 28 H 1.09003 * 109.46788 * 61.97169 * 1 2 3 29 29 H 1.09003 * 109.46626 * 305.00125 * 4 2 1 30 30 H 1.09001 * 109.46940 * 185.00640 * 4 2 1 31 31 H 0.97000 * 120.00310 * 180.28338 * 6 5 4 32 32 H 0.97005 * 120.00015 * 0.26997 * 6 5 4 33 33 H 1.09000 * 109.46698 * 204.17666 * 11 10 8 34 34 H 1.09002 * 109.47165 * 324.17430 * 11 10 8 35 35 H 0.97000 * 120.00252 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.47437 * 205.22852 * 20 10 8 37 37 H 1.09000 * 109.47298 * 325.22926 * 20 10 8 38 38 H 1.07994 * 126.58667 * 0.04606 * 22 21 20 39 39 H 1.08008 * 126.57590 * 179.97438 * 23 22 21 40 40 H 1.07995 * 125.79064 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6415 0.0569 -2.4765 6 7 1.9898 -0.3890 -3.6998 7 8 1.0118 1.0873 -2.3633 8 6 2.0323 -0.7104 1.2305 9 8 2.2666 -1.8997 1.1910 10 7 2.2211 -0.0241 2.3750 11 6 1.8363 1.3873 2.4547 12 6 0.3693 1.4902 2.7837 13 1 -0.2177 0.5940 2.9202 14 6 -0.2233 2.7286 2.9114 15 7 0.4916 3.8200 2.7456 16 14 -2.0419 2.8562 3.3185 17 1 -2.2176 2.8956 4.7925 18 1 -2.5972 4.0968 2.7205 19 1 -2.7567 1.6776 2.7662 20 6 2.8109 -0.6894 3.5393 21 6 4.3138 -0.6410 3.4376 22 6 5.1110 0.2829 4.0035 23 6 6.4391 -0.0519 3.6524 24 6 6.3738 -1.1600 2.8926 25 8 5.0846 -1.5162 2.7716 26 1 -0.3633 -1.0270 0.0353 27 1 -0.3633 0.5442 0.8717 28 1 -0.3633 0.4829 -0.9072 29 1 1.6054 -1.7199 -1.2950 30 1 3.1264 -0.7996 -1.2054 31 1 1.7368 0.1141 -4.4896 32 1 2.4937 -1.2129 -3.7904 33 1 2.4188 1.8791 3.2337 34 1 2.0288 1.8710 1.4970 35 1 0.0747 4.6912 2.8359 36 1 2.4917 -0.1807 4.4489 37 1 2.4821 -1.7281 3.5695 38 1 4.7971 1.1196 4.6099 39 1 7.3342 0.4804 3.9387 40 1 7.2158 -1.6787 2.4587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283174541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:39 Heat of formation + Delta-G solvation = -88.108232 kcal Electronic energy + Delta-G solvation = -24394.209759 eV Core-core repulsion = 20788.662655 eV Total energy + Delta-G solvation = -3605.547104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.43545 -41.28079 -40.15437 -36.91905 -35.26686 -34.61728 -34.52788 -33.83335 -31.70788 -29.17945 -28.73150 -27.22323 -25.04501 -24.23143 -22.58746 -21.75037 -21.17158 -19.76863 -18.71340 -18.60275 -18.06298 -17.94205 -17.40636 -17.12493 -16.61013 -16.35196 -16.12955 -15.97999 -15.13373 -15.00882 -14.40835 -14.35524 -14.10521 -13.85275 -13.68542 -13.56798 -13.44087 -13.26528 -13.02003 -12.84832 -12.67788 -12.54551 -12.17256 -11.91306 -11.82707 -11.65746 -10.99561 -10.83667 -10.69487 -10.56120 -10.46658 -9.62866 -9.38023 -8.17672 -6.28539 0.75842 1.42334 1.45319 1.53662 1.64659 1.67591 1.72454 2.20185 2.32543 2.44362 2.77290 3.14019 3.66082 3.78484 3.91350 4.05896 4.15975 4.18254 4.28720 4.39995 4.52315 4.58566 4.72136 4.76528 4.84627 4.94022 5.04481 5.11981 5.12808 5.21745 5.30994 5.56113 5.62431 5.66635 5.80835 5.97744 6.07652 6.26896 6.48847 6.51600 6.82183 7.26292 7.41056 7.42366 8.88865 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.007374 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.989977 B = 3796.125678 C = 6100.278989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.078 0.922 4 C -0.117 4.117 5 C 0.518 3.482 6 N -0.834 5.834 7 O -0.580 6.580 8 C 0.524 3.476 9 O -0.579 6.579 10 N -0.595 5.595 11 C 0.255 3.745 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.024 3.976 15 N -0.919 5.919 16 Si 0.949 3.051 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.194 3.806 21 C -0.043 4.043 22 C -0.208 4.208 23 C -0.224 4.224 24 C -0.044 4.044 25 O -0.188 6.188 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.408 0.592 32 H 0.418 0.582 33 H 0.025 0.975 34 H 0.021 0.979 35 H 0.266 0.734 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.176 -9.656 -5.852 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.158 4.158 5 C 0.303 3.697 6 N -0.399 5.399 7 O -0.460 6.460 8 C 0.314 3.686 9 O -0.461 6.461 10 N -0.325 5.325 11 C 0.135 3.865 12 C -0.571 4.571 13 H 0.078 0.922 14 C -0.177 4.177 15 N -0.558 5.558 16 Si 0.775 3.225 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.193 1.193 20 C 0.071 3.929 21 C -0.095 4.095 22 C -0.228 4.228 23 C -0.243 4.243 24 C -0.111 4.111 25 O -0.084 6.084 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.240 0.760 32 H 0.250 0.750 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.104 0.896 38 H 0.168 0.832 39 H 0.190 0.810 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.771 -9.694 -5.756 14.285 hybrid contribution -0.653 0.657 0.112 0.933 sum 8.118 -9.038 -5.644 13.395 Atomic orbital electron populations 1.21900 0.92439 1.01546 1.04404 1.20818 0.98641 0.99693 0.91273 0.90379 1.21440 1.03532 1.00430 0.90358 1.20684 0.78021 0.84710 0.86295 1.43619 1.59312 1.29916 1.07012 1.90758 1.41568 1.26375 1.87302 1.20754 0.76047 0.86626 0.85195 1.90567 1.54234 1.15723 1.85544 1.48273 1.59292 1.13511 1.11419 1.19119 0.94782 0.75508 0.97098 1.21557 0.94879 0.92379 1.48312 0.92193 1.25587 1.01868 0.95320 0.94901 1.70013 1.37771 0.98230 1.49819 0.85679 0.80626 0.77656 0.78553 1.19730 1.21164 1.19271 1.19756 0.83108 0.99858 0.90156 1.23039 0.94360 0.92626 0.99433 1.21913 0.93753 1.01410 1.05695 1.22144 0.98189 0.99923 1.04036 1.24877 0.84365 0.99089 1.02776 1.84087 1.18255 1.46986 1.59108 0.92918 0.91012 0.91196 0.86688 0.87734 0.76026 0.75046 0.95650 0.96085 0.92497 0.86343 0.89594 0.83214 0.80990 0.74446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.91 8.90 71.98 0.64 -5.27 16 2 C -0.08 -3.25 1.70 -11.54 -0.02 -3.27 16 3 H 0.08 3.48 5.90 -2.39 -0.01 3.47 16 4 C -0.12 -3.49 4.66 29.85 0.14 -3.35 16 5 C 0.52 14.95 7.80 87.65 0.68 15.64 16 6 N -0.83 -14.49 8.87 -173.54 -1.54 -16.03 16 7 O -0.58 -22.71 14.81 -3.03 -0.04 -22.75 16 8 C 0.52 22.07 6.65 87.66 0.58 22.65 16 9 O -0.58 -25.21 15.87 -3.03 -0.05 -25.26 16 10 N -0.60 -25.43 2.47 -830.49 -2.05 -27.47 16 11 C 0.26 12.37 4.95 85.63 0.42 12.80 16 12 C -0.53 -27.47 6.89 25.60 0.18 -27.29 16 13 H 0.06 3.10 7.43 -2.91 -0.02 3.08 16 14 C 0.02 1.26 5.46 84.65 0.46 1.72 16 15 N -0.92 -51.67 13.29 21.45 0.28 -51.38 16 16 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 C 0.19 7.27 5.90 85.64 0.51 7.78 16 21 C -0.04 -1.54 6.87 24.83 0.17 -1.37 16 22 C -0.21 -6.65 10.81 22.19 0.24 -6.41 16 23 C -0.22 -5.86 10.91 22.19 0.24 -5.62 16 24 C -0.04 -1.11 12.09 66.97 0.81 -0.30 16 25 O -0.19 -6.45 10.65 -2.46 -0.03 -6.48 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 3.32 4.97 -2.39 -0.01 3.31 16 28 H 0.07 2.85 5.92 -2.39 -0.01 2.84 16 29 H 0.11 3.08 8.02 -2.39 -0.02 3.07 16 30 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.41 6.09 8.93 -92.71 -0.83 5.26 16 32 H 0.42 4.31 8.83 -92.70 -0.82 3.49 16 33 H 0.03 1.28 8.03 -2.39 -0.02 1.26 16 34 H 0.02 1.12 5.99 -2.39 -0.01 1.10 16 35 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.12 4.13 8.04 -2.39 -0.02 4.11 16 37 H 0.09 3.20 7.50 -2.39 -0.02 3.18 16 38 H 0.15 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.17 3.38 8.06 -2.91 -0.02 3.35 16 40 H 0.24 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -70.55 338.74 3.10 -67.45 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.56 Total: 29.70 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.06 Total: 7.71 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -3.30 Total: -94.89 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -0.12 Total: -54.49 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.55 3.10 -67.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283174541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.658 kcal (2) G-P(sol) polarization free energy of solvation -70.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds