Wall clock time and date at job start Tue Mar 31 2020 07:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00456 * 2 1 4 4 C 1.52996 * 109.47517 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46957 * 64.99980 * 4 3 2 6 6 C 1.35932 * 117.00082 * 179.97438 * 5 4 3 7 7 C 1.38852 * 120.40303 * 359.97438 * 6 5 4 8 8 N 1.31876 * 120.99625 * 180.02562 * 7 6 5 9 9 C 1.31681 * 121.94423 * 359.69614 * 8 7 6 10 10 C 1.39531 * 120.68852 * 0.58955 * 9 8 7 11 11 C 1.47857 * 120.52965 * 179.70279 * 10 9 8 12 12 O 1.21549 * 119.99706 * 179.72316 * 11 10 9 13 13 N 1.34779 * 120.00033 * 359.72599 * 11 10 9 14 14 C 1.46497 * 119.99943 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.47078 * 34.99474 * 14 13 11 16 16 C 1.53000 * 109.47021 * 275.00054 * 14 13 11 17 17 C 1.50694 * 109.47115 * 154.99835 * 14 13 11 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.38841 * 120.40502 * 180.02562 * 6 5 4 26 26 H 1.09007 * 109.47160 * 300.00118 * 1 2 3 27 27 H 1.09001 * 109.47227 * 59.99676 * 1 2 3 28 28 H 1.08996 * 109.47471 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47281 * 60.00040 * 3 2 1 30 30 H 1.09000 * 109.47367 * 300.00031 * 3 2 1 31 31 H 1.08999 * 109.47535 * 305.00319 * 4 3 2 32 32 H 1.09002 * 109.47646 * 184.99801 * 4 3 2 33 33 H 1.08002 * 119.50198 * 0.03968 * 7 6 5 34 34 H 1.08004 * 119.65979 * 180.29544 * 9 8 7 35 35 H 0.96997 * 119.99849 * 359.97438 * 13 11 10 36 36 H 1.08998 * 109.47089 * 59.99825 * 16 14 13 37 37 H 1.08995 * 109.47131 * 179.97438 * 16 14 13 38 38 H 1.09002 * 109.47106 * 299.99878 * 16 14 13 39 39 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 40 40 H 1.08007 * 120.88093 * 0.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3033 0.3981 -1.3812 7 6 6.1905 0.7932 -0.3889 8 7 7.4903 0.6236 -0.5331 9 6 8.0054 0.0714 -1.6119 10 6 7.1838 -0.3480 -2.6588 11 6 7.7665 -0.9616 -3.8713 12 8 7.0413 -1.3281 -4.7753 13 7 9.1016 -1.1146 -3.9740 14 6 9.6789 -1.7221 -5.1756 15 1 9.0925 -1.4315 -6.0473 16 6 9.6626 -3.2456 -5.0350 17 6 11.0994 -1.2484 -5.3450 18 1 11.5291 -0.5631 -4.6295 19 6 11.8502 -1.6893 -6.4142 20 7 11.3268 -2.5235 -7.2858 21 14 13.6108 -1.1015 -6.6246 22 1 14.1961 -1.7174 -7.8426 23 1 13.6261 0.3771 -6.7608 24 1 14.4101 -1.4975 -5.4374 25 6 5.7991 -0.1832 -2.5406 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8508 0.5684 0.8426 32 1 3.9786 2.1764 0.0902 33 1 5.8103 1.2460 0.5149 34 1 9.0754 -0.0539 -1.6892 35 1 9.6802 -0.8219 -3.2527 36 1 8.6351 -3.5881 -4.9124 37 1 10.0917 -3.6976 -5.9292 38 1 10.2489 -3.5363 -4.1633 39 1 11.8549 -2.8333 -8.0382 40 1 5.1338 -0.4995 -3.3304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283716113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:10 Heat of formation + Delta-G solvation = -83.596584 kcal Electronic energy + Delta-G solvation = -22660.478904 eV Core-core repulsion = 19055.127440 eV Total energy + Delta-G solvation = -3605.351465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83464 -39.19909 -38.32247 -37.56187 -34.89892 -32.63207 -32.46219 -31.33550 -29.99893 -28.67214 -26.78961 -25.29187 -24.84870 -23.40032 -22.96032 -21.10205 -19.74196 -18.71127 -17.38357 -17.21800 -16.83770 -16.72409 -15.97377 -15.65009 -15.61282 -15.30943 -14.94436 -14.38745 -14.33304 -13.75702 -13.42853 -13.13339 -13.04859 -12.90708 -12.54933 -12.34294 -11.95786 -11.92882 -11.71816 -11.40874 -11.11446 -10.97048 -10.77711 -10.35738 -10.24223 -10.14101 -9.86657 -9.63494 -9.10898 -9.07155 -8.59978 -8.56049 -7.98332 -6.13023 -4.22683 0.70426 1.21812 2.75910 3.24820 3.26582 3.28902 3.31609 3.32925 3.94443 4.04659 4.28473 4.35962 4.38528 4.55118 4.62203 4.77632 4.85905 4.94327 4.95371 4.97107 4.98381 5.19185 5.20452 5.30749 5.32718 5.43564 5.86187 6.12457 6.29343 6.67798 6.81601 6.94726 7.03636 7.12397 7.37855 7.51926 7.66955 7.78920 7.88747 8.12643 8.56978 8.73676 9.00251 9.44390 10.92936 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035141 B = 0.002652 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.597884 B =10556.780785 C =11098.235803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.057 3.943 5 O -0.299 6.299 6 C 0.072 3.928 7 C 0.027 3.973 8 N -0.452 5.452 9 C 0.093 3.907 10 C -0.130 4.130 11 C 0.546 3.454 12 O -0.544 6.544 13 N -0.697 5.697 14 C 0.264 3.736 15 H 0.051 0.949 16 C -0.148 4.148 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.054 4.054 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.389 0.611 36 H 0.016 0.984 37 H 0.092 0.908 38 H 0.028 0.972 39 H 0.265 0.735 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.360 8.124 16.592 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.018 4.018 5 O -0.212 6.212 6 C 0.024 3.976 7 C -0.131 4.131 8 N -0.161 5.161 9 C -0.066 4.066 10 C -0.135 4.135 11 C 0.330 3.670 12 O -0.423 6.423 13 N -0.345 5.345 14 C 0.163 3.837 15 H 0.069 0.931 16 C -0.207 4.207 17 C -0.574 4.574 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.082 4.082 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.175 0.825 34 H 0.182 0.818 35 H 0.223 0.777 36 H 0.035 0.965 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.307 7.794 16.265 24.315 hybrid contribution 0.516 0.496 -0.211 0.746 sum -15.791 8.290 16.054 23.996 Atomic orbital electron populations 1.22770 0.80685 1.03133 0.99967 1.87981 1.19942 1.26961 1.95412 1.22567 0.91324 0.85940 1.01575 1.22910 0.94061 0.98363 0.86511 1.86166 1.18982 1.76938 1.39083 1.19884 0.83834 0.98216 0.95616 1.22990 0.89321 1.01970 0.98842 1.67511 1.13111 1.11992 1.23499 1.22941 1.00550 0.94792 0.88329 1.21211 0.93842 1.01266 0.97225 1.17938 0.83580 0.79806 0.85683 1.90748 1.60216 1.51141 1.40170 1.46512 1.05073 1.60201 1.22684 1.18828 0.93213 0.89788 0.81903 0.93077 1.22089 0.97489 0.98686 1.02393 1.21161 0.96765 1.28593 1.10884 0.91988 1.24890 0.98702 0.94726 0.95370 1.69893 1.37038 1.31643 1.13430 0.86481 0.83871 0.78986 0.77602 1.21142 1.20152 1.20111 1.21021 0.94596 0.96339 0.96198 0.94076 0.93821 0.89377 0.90939 0.91872 0.90745 0.90097 0.82494 0.81826 0.77697 0.96528 0.88983 0.95305 0.92465 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.70 10.67 -40.08 -0.43 -4.13 16 3 C 0.06 0.43 6.32 37.16 0.23 0.67 16 4 C 0.06 0.44 5.13 37.16 0.19 0.63 16 5 O -0.30 -3.61 10.11 -24.38 -0.25 -3.86 16 6 C 0.07 0.95 6.70 -39.13 -0.26 0.69 16 7 C 0.03 0.32 10.21 -17.31 -0.18 0.15 16 8 N -0.45 -6.33 10.34 -12.79 -0.13 -6.47 16 9 C 0.09 1.36 10.71 -17.13 -0.18 1.18 16 10 C -0.13 -2.17 5.89 -104.84 -0.62 -2.78 16 11 C 0.55 11.26 7.75 -12.32 -0.10 11.16 16 12 O -0.54 -13.19 16.08 5.32 0.09 -13.11 16 13 N -0.70 -14.57 5.02 -55.88 -0.28 -14.85 16 14 C 0.26 6.70 2.56 -69.09 -0.18 6.52 16 15 H 0.05 1.49 7.58 -51.92 -0.39 1.10 16 16 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 17 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.88 -24.74 11.32 55.43 0.63 -24.11 16 21 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.05 -0.85 9.67 -38.72 -0.37 -1.22 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.53 7.68 -51.93 -0.40 0.13 16 32 H 0.08 0.44 7.67 -51.93 -0.40 0.04 16 33 H 0.16 1.35 6.30 -52.49 -0.33 1.02 16 34 H 0.16 2.09 6.42 -52.48 -0.34 1.76 16 35 H 0.39 6.93 6.60 -40.82 -0.27 6.66 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.15 2.47 7.74 -52.48 -0.41 2.06 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -32.73 342.72 -5.98 -38.71 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.35 Total: 4.84 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.40 Total: 2.28 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.21 Total: -45.43 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.59 Total: -21.10 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.73 -5.98 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283716113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.884 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds