Wall clock time and date at job start Tue Mar 31 2020 07:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00456 * 2 1 4 4 C 1.52996 * 109.47517 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46957 * 64.99980 * 4 3 2 6 6 C 1.35932 * 117.00082 * 179.97438 * 5 4 3 7 7 C 1.38852 * 120.40303 * 359.97438 * 6 5 4 8 8 N 1.31876 * 120.99625 * 180.02562 * 7 6 5 9 9 C 1.31681 * 121.94423 * 359.69614 * 8 7 6 10 10 C 1.39531 * 120.68852 * 0.58955 * 9 8 7 11 11 C 1.47857 * 120.52965 * 179.70279 * 10 9 8 12 12 O 1.21549 * 119.99706 * 179.72316 * 11 10 9 13 13 N 1.34779 * 120.00033 * 359.72599 * 11 10 9 14 14 C 1.46497 * 119.99943 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.47078 * 34.99474 * 14 13 11 16 16 C 1.53000 * 109.47021 * 275.00054 * 14 13 11 17 17 C 1.50694 * 109.47115 * 154.99835 * 14 13 11 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.38841 * 120.40502 * 180.02562 * 6 5 4 26 26 H 1.09007 * 109.47160 * 300.00118 * 1 2 3 27 27 H 1.09001 * 109.47227 * 59.99676 * 1 2 3 28 28 H 1.08996 * 109.47471 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47281 * 60.00040 * 3 2 1 30 30 H 1.09000 * 109.47367 * 300.00031 * 3 2 1 31 31 H 1.08999 * 109.47535 * 305.00319 * 4 3 2 32 32 H 1.09002 * 109.47646 * 184.99801 * 4 3 2 33 33 H 1.08002 * 119.50198 * 0.03968 * 7 6 5 34 34 H 1.08004 * 119.65979 * 180.29544 * 9 8 7 35 35 H 0.96997 * 119.99849 * 359.97438 * 13 11 10 36 36 H 1.08998 * 109.47089 * 59.99825 * 16 14 13 37 37 H 1.08995 * 109.47131 * 179.97438 * 16 14 13 38 38 H 1.09002 * 109.47106 * 299.99878 * 16 14 13 39 39 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 40 40 H 1.08007 * 120.88093 * 0.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3033 0.3981 -1.3812 7 6 6.1905 0.7932 -0.3889 8 7 7.4903 0.6236 -0.5331 9 6 8.0054 0.0714 -1.6119 10 6 7.1838 -0.3480 -2.6588 11 6 7.7665 -0.9616 -3.8713 12 8 7.0413 -1.3281 -4.7753 13 7 9.1016 -1.1146 -3.9740 14 6 9.6789 -1.7221 -5.1756 15 1 9.0925 -1.4315 -6.0473 16 6 9.6626 -3.2456 -5.0350 17 6 11.0994 -1.2484 -5.3450 18 1 11.5291 -0.5631 -4.6295 19 6 11.8502 -1.6893 -6.4142 20 7 11.3268 -2.5235 -7.2858 21 14 13.6108 -1.1015 -6.6246 22 1 14.1961 -1.7174 -7.8426 23 1 13.6261 0.3771 -6.7608 24 1 14.4101 -1.4975 -5.4374 25 6 5.7991 -0.1832 -2.5406 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8508 0.5684 0.8426 32 1 3.9786 2.1764 0.0902 33 1 5.8103 1.2460 0.5149 34 1 9.0754 -0.0539 -1.6892 35 1 9.6802 -0.8219 -3.2527 36 1 8.6351 -3.5881 -4.9124 37 1 10.0917 -3.6976 -5.9292 38 1 10.2489 -3.5363 -4.1633 39 1 11.8549 -2.8333 -8.0382 40 1 5.1338 -0.4995 -3.3304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283716113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:09 Heat of formation + Delta-G solvation = -107.698063 kcal Electronic energy + Delta-G solvation = -22661.524023 eV Core-core repulsion = 19055.127440 eV Total energy + Delta-G solvation = -3606.396583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.94961 -40.54435 -39.33912 -38.37078 -36.80982 -34.46369 -33.66172 -32.41481 -31.00834 -30.32308 -27.36199 -27.30421 -26.00745 -24.51575 -23.90617 -22.65038 -21.41111 -20.01289 -18.60450 -18.18391 -17.89849 -17.82991 -17.25768 -16.89056 -16.60200 -16.40829 -16.11396 -15.88454 -15.83465 -14.97332 -14.63509 -14.52373 -14.39077 -14.16651 -13.71838 -13.60964 -13.22281 -13.00562 -12.87932 -12.73792 -12.58760 -12.54583 -12.26827 -12.15468 -12.00370 -11.31499 -11.12304 -10.87191 -10.66920 -10.61402 -10.49890 -9.86696 -9.57453 -8.16732 -6.34462 -0.48536 0.09905 1.47261 1.49481 1.57100 1.83848 1.87434 2.34413 2.54699 2.74451 2.80877 3.13923 3.27976 3.44519 3.73349 3.80132 3.88577 4.07761 4.16884 4.18820 4.34166 4.46353 4.51833 4.56949 4.66252 4.74040 4.77559 4.87624 4.91280 4.94878 5.07561 5.24253 5.40270 5.56110 5.66360 5.87159 6.07714 6.11087 6.23119 6.68585 6.71207 6.83291 7.27367 7.42805 8.89568 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035141 B = 0.002652 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.597884 B =10556.780785 C =11098.235803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.058 3.942 4 C 0.043 3.957 5 O -0.316 6.316 6 C 0.081 3.919 7 C 0.047 3.953 8 N -0.457 5.457 9 C 0.099 3.901 10 C -0.146 4.146 11 C 0.547 3.453 12 O -0.590 6.590 13 N -0.691 5.691 14 C 0.270 3.730 15 H 0.002 0.998 16 C -0.135 4.135 17 C -0.548 4.548 18 H 0.077 0.923 19 C 0.014 3.986 20 N -0.917 5.917 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.271 1.271 24 H -0.263 1.263 25 C -0.071 4.071 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.201 0.799 34 H 0.180 0.820 35 H 0.407 0.593 36 H 0.012 0.988 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.266 0.734 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 10.005 19.645 27.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.018 4.018 4 C -0.031 4.031 5 O -0.229 6.229 6 C 0.033 3.967 7 C -0.112 4.112 8 N -0.165 5.165 9 C -0.060 4.060 10 C -0.151 4.151 11 C 0.333 3.667 12 O -0.473 6.473 13 N -0.340 5.340 14 C 0.167 3.833 15 H 0.020 0.980 16 C -0.194 4.194 17 C -0.586 4.586 18 H 0.095 0.905 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.799 3.201 22 H -0.213 1.213 23 H -0.196 1.196 24 H -0.187 1.187 25 C -0.098 4.098 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.218 0.782 34 H 0.197 0.803 35 H 0.243 0.757 36 H 0.031 0.969 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.949 9.695 19.367 26.897 hybrid contribution 0.202 -0.034 -1.065 1.085 sum -15.746 9.662 18.301 26.004 Atomic orbital electron populations 1.22905 0.79388 1.03627 1.01079 1.87925 1.21596 1.28756 1.95687 1.22783 0.90691 0.85250 1.03113 1.23381 0.94861 0.99853 0.84955 1.86176 1.18023 1.77207 1.41503 1.19791 0.84850 0.97324 0.94756 1.23652 0.88394 0.99713 0.99408 1.67644 1.14004 1.12103 1.22798 1.23089 1.01037 0.94105 0.87732 1.20759 0.94459 1.03608 0.96321 1.18491 0.82999 0.78786 0.86399 1.90715 1.61152 1.53111 1.42282 1.46209 1.05664 1.60184 1.21949 1.18448 0.92668 0.90189 0.82033 0.97997 1.21918 0.97202 0.98412 1.01879 1.21495 0.96932 1.28797 1.11361 0.90504 1.25820 1.03077 0.94735 0.94989 1.70049 1.38685 1.32808 1.13970 0.85358 0.78547 0.78472 0.77723 1.21297 1.19568 1.18736 1.20990 0.94172 0.97419 0.97224 0.92090 0.93530 0.89350 0.87595 0.92011 0.89683 0.86982 0.78219 0.80291 0.75673 0.96937 0.91194 0.93785 0.92501 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.47 10.67 -144.34 -1.54 -9.01 16 3 C 0.06 0.65 6.32 71.98 0.45 1.10 16 4 C 0.04 0.53 5.13 71.98 0.37 0.90 16 5 O -0.32 -7.07 10.11 -88.15 -0.89 -7.96 16 6 C 0.08 2.00 6.70 22.56 0.15 2.15 16 7 C 0.05 0.97 10.21 84.83 0.87 1.83 16 8 N -0.46 -11.40 10.34 -194.39 -2.01 -13.41 16 9 C 0.10 2.72 10.71 85.03 0.91 3.63 16 10 C -0.15 -4.89 5.89 -20.01 -0.12 -5.00 16 11 C 0.55 23.35 7.75 86.79 0.67 24.02 16 12 O -0.59 -30.39 16.08 -3.87 -0.06 -30.45 16 13 N -0.69 -29.41 5.02 -448.97 -2.26 -31.66 16 14 C 0.27 14.13 2.56 44.24 0.11 14.25 16 15 H 0.00 0.13 7.58 -2.38 -0.02 0.11 16 16 C -0.14 -6.94 9.26 71.98 0.67 -6.27 16 17 C -0.55 -28.86 8.73 25.60 0.22 -28.64 16 18 H 0.08 3.73 7.74 -2.91 -0.02 3.71 16 19 C 0.01 0.75 5.30 84.66 0.45 1.20 16 20 N -0.92 -52.62 11.32 21.45 0.24 -52.38 16 21 Si 0.97 41.81 29.54 68.60 2.03 43.84 16 22 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 C -0.07 -2.23 9.67 22.83 0.22 -2.01 16 26 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.88 7.68 -2.39 -0.02 0.86 16 32 H 0.11 0.67 7.67 -2.39 -0.02 0.66 16 33 H 0.20 2.34 6.30 -2.91 -0.02 2.32 16 34 H 0.18 4.22 6.42 -2.91 -0.02 4.20 16 35 H 0.41 14.24 6.60 -92.71 -0.61 13.62 16 36 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 38 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.14 4.70 7.74 -2.91 -0.02 4.68 16 Total: -1.00 -73.46 342.72 2.19 -71.27 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.45 Total: 21.07 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.23 Total: 8.69 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -4.02 Total: -97.45 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -2.49 Total: -47.41 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -73.46 2.19 -71.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283716113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.428 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds