Wall clock time and date at job start Tue Mar 31 2020 07:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47327 * 2 1 4 4 O 1.42904 * 109.47153 * 119.99993 * 2 1 3 5 5 C 1.53002 * 109.47216 * 239.99916 * 2 1 3 6 6 N 1.46502 * 109.47031 * 180.02562 * 5 2 1 7 7 C 1.46496 * 119.99997 * 269.99908 * 6 5 2 8 8 C 1.34781 * 119.99848 * 89.99709 * 6 5 2 9 9 O 1.21581 * 120.00130 * 0.02562 * 8 6 5 10 10 N 1.34776 * 119.99707 * 179.97438 * 8 6 5 11 11 C 1.39939 * 119.99879 * 175.42881 * 10 8 6 12 12 C 1.38965 * 120.03310 * 35.13068 * 11 10 8 13 13 C 1.38159 * 120.06709 * 180.02562 * 12 11 10 14 14 C 1.38174 * 120.13776 * 359.69495 * 13 12 11 15 15 C 1.38908 * 120.06806 * 0.55381 * 14 13 12 16 16 O 1.35748 * 120.03165 * 179.74369 * 15 14 13 17 17 C 1.34831 * 116.99877 * 174.35097 * 16 15 14 18 18 H 1.07996 * 120.00193 * 5.03897 * 17 16 15 19 19 C 1.38655 * 120.00076 * 185.03879 * 17 16 15 20 20 N 1.31553 * 119.99831 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00000 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47514 * 90.00101 * 21 19 17 23 23 H 1.48503 * 109.47161 * 210.00465 * 21 19 17 24 24 H 1.48508 * 109.47223 * 329.99837 * 21 19 17 25 25 C 1.38701 * 120.03834 * 215.14255 * 11 10 8 26 26 H 1.09000 * 109.47327 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47726 * 300.00149 * 1 2 3 28 28 H 1.09003 * 109.47361 * 60.00486 * 1 2 3 29 29 H 0.96706 * 113.99646 * 59.99653 * 4 2 1 30 30 H 1.08995 * 109.47051 * 60.00163 * 5 2 1 31 31 H 1.08997 * 109.47250 * 299.99775 * 5 2 1 32 32 H 1.09004 * 109.47379 * 269.99904 * 7 6 5 33 33 H 1.08999 * 109.47115 * 30.00112 * 7 6 5 34 34 H 1.09006 * 109.47179 * 149.99813 * 7 6 5 35 35 H 0.97000 * 120.00194 * 355.43834 * 10 8 6 36 36 H 1.08001 * 119.96766 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.93491 * 179.97438 * 13 12 11 38 38 H 1.07995 * 119.96408 * 180.30137 * 14 13 12 39 39 H 0.97005 * 119.99988 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.07067 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7218 -1.2489 7 6 4.2380 0.3768 -1.8829 8 6 4.1784 -1.7329 -0.6652 9 8 3.5700 -2.6449 -0.1394 10 7 5.5261 -1.7336 -0.6653 11 6 6.2254 -2.7318 0.0224 12 6 5.7203 -4.0255 0.0735 13 6 6.4098 -5.0114 0.7528 14 6 7.6062 -4.7162 1.3778 15 6 8.1137 -3.4239 1.3347 16 8 9.2865 -3.1335 1.9535 17 6 9.7816 -1.8921 1.7755 18 1 9.2095 -1.1555 1.2311 19 6 11.0253 -1.5611 2.2915 20 7 11.7224 -2.4585 2.9543 21 14 11.7114 0.1586 2.0443 22 1 11.2884 1.0273 3.1719 23 1 13.1944 0.0977 1.9957 24 1 11.1970 0.7182 0.7684 25 6 7.4231 -2.4311 0.6540 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.7209 -1.5953 1.2329 30 1 1.6767 -0.2075 -2.1392 31 1 1.6767 -1.7489 -1.2492 32 1 4.4199 0.1355 -2.9303 33 1 3.6492 1.2917 -1.8178 34 1 5.1904 0.5204 -1.3725 35 1 6.0115 -1.0422 -1.1420 36 1 4.7879 -4.2604 -0.4182 37 1 6.0151 -6.0159 0.7915 38 1 8.1453 -5.4902 1.9039 39 1 12.5924 -2.2268 3.3156 40 1 7.8174 -1.4263 0.6162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291493372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:12 Heat of formation + Delta-G solvation = -67.273624 kcal Electronic energy + Delta-G solvation = -23606.600427 eV Core-core repulsion = 20001.956779 eV Total energy + Delta-G solvation = -3604.643648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.55049 -38.87826 -37.72596 -36.37158 -35.24045 -34.09977 -32.19560 -31.47515 -29.29917 -28.49001 -27.67476 -25.90365 -25.19188 -22.40035 -21.73769 -21.42106 -19.72593 -18.52310 -17.86902 -17.19355 -16.75487 -16.08556 -15.74165 -15.41961 -14.99086 -14.68142 -14.43363 -14.08743 -14.01450 -13.79019 -13.51572 -13.27789 -12.94840 -12.84319 -12.52123 -12.37056 -12.28760 -11.85206 -11.69734 -11.47109 -11.20135 -11.07885 -10.94835 -10.72217 -10.42872 -10.38731 -9.90721 -9.50652 -9.40182 -8.77231 -8.69323 -7.64386 -7.07843 -6.40958 -4.00519 2.13252 2.46328 2.60239 3.13736 3.14039 3.18780 3.37084 3.91708 3.99178 4.32089 4.54241 4.66443 4.77915 4.82696 4.93009 5.03363 5.14171 5.17641 5.34193 5.39994 5.42217 5.43756 5.69972 5.76178 5.87629 6.07926 6.15633 6.19719 6.33018 6.41738 6.62029 6.84341 7.07058 7.16207 7.28479 7.40407 7.49067 7.68122 7.89895 8.01227 8.04193 8.69042 9.04582 9.76114 10.77341 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.003817 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.433482 B = 7334.684872 C = 8215.190905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.093 0.907 4 O -0.552 6.552 5 C 0.102 3.898 6 N -0.630 5.630 7 C 0.076 3.924 8 C 0.713 3.287 9 O -0.569 6.569 10 N -0.682 5.682 11 C 0.197 3.803 12 C -0.203 4.203 13 C -0.065 4.065 14 C -0.202 4.202 15 C 0.169 3.831 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.257 4.257 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.380 0.620 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.401 0.599 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.269 0.731 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.903 6.534 -10.966 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.023 3.977 3 H 0.111 0.889 4 O -0.358 6.358 5 C -0.022 4.022 6 N -0.367 5.367 7 C -0.067 4.067 8 C 0.415 3.585 9 O -0.445 6.445 10 N -0.329 5.329 11 C 0.103 3.897 12 C -0.224 4.224 13 C -0.084 4.084 14 C -0.222 4.222 15 C 0.115 3.885 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.279 4.279 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.229 0.771 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.719 6.344 -10.227 21.419 hybrid contribution 0.316 1.027 -0.573 1.218 sum -17.403 7.371 -10.800 21.768 Atomic orbital electron populations 1.22453 0.96165 1.02783 1.02726 1.22303 0.92653 0.96917 0.85814 0.88891 1.86595 1.77267 1.29524 1.42453 1.22100 0.78908 1.02870 0.98348 1.46854 1.06123 1.23185 1.60543 1.21760 0.97381 0.90005 0.97579 1.15701 0.81571 0.82269 0.78932 1.90850 1.67455 1.36467 1.49757 1.42685 1.04719 1.30801 1.54741 1.17204 0.91616 0.87047 0.93811 1.20698 1.02605 0.91299 1.07792 1.20547 0.93592 0.98080 0.96165 1.20248 0.98836 0.94779 1.08320 1.19044 0.87034 0.92411 0.90029 1.84005 1.30301 1.33159 1.60677 1.21265 1.01914 0.86330 1.37251 0.89306 1.25259 0.95229 0.99723 0.96291 1.70038 1.12599 1.33780 1.33475 0.85737 0.78380 0.80498 0.78914 1.19941 1.20281 1.19331 1.20783 0.98622 1.00846 1.07686 0.92046 0.91579 0.91692 0.77108 0.89943 0.89372 0.92513 0.90830 0.91220 0.76303 0.85733 0.86718 0.86478 0.92084 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.53 37.15 0.35 -0.91 16 2 C 0.08 0.79 3.86 -26.73 -0.10 0.69 16 3 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 4 O -0.55 -7.44 12.15 -43.94 -0.53 -7.97 16 5 C 0.10 0.92 5.15 -4.04 -0.02 0.90 16 6 N -0.63 -7.16 2.83 -187.35 -0.53 -7.69 16 7 C 0.08 0.61 10.16 59.84 0.61 1.21 16 8 C 0.71 11.22 7.63 -86.91 -0.66 10.55 16 9 O -0.57 -10.43 12.14 -3.41 -0.04 -10.47 16 10 N -0.68 -11.03 5.17 -14.24 -0.07 -11.10 16 11 C 0.20 3.93 6.29 -83.72 -0.53 3.40 16 12 C -0.20 -4.03 8.69 -39.34 -0.34 -4.37 16 13 C -0.06 -1.26 10.03 -39.63 -0.40 -1.66 16 14 C -0.20 -4.45 9.99 -39.36 -0.39 -4.85 16 15 C 0.17 4.19 6.65 -39.13 -0.26 3.93 16 16 O -0.18 -5.14 9.76 0.05 0.00 -5.14 16 17 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 21 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.26 -5.75 9.08 -39.21 -0.36 -6.11 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.38 4.73 8.44 45.56 0.38 5.12 16 30 H 0.08 0.50 8.07 -51.93 -0.42 0.09 16 31 H 0.09 0.90 7.42 -51.93 -0.39 0.51 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 35 H 0.40 5.31 6.62 -40.82 -0.27 5.04 16 36 H 0.12 2.43 6.22 -52.49 -0.33 2.10 16 37 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -34.55 335.89 -6.72 -41.27 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -4.43 Total: 12.23 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.90 Total: -6.93 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.16 Total: -43.57 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.57 Total: -23.59 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.55 -6.72 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291493372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.001 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds