Wall clock time and date at job start Tue Mar 31 2020 07:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47327 * 2 1 4 4 O 1.42904 * 109.47153 * 119.99993 * 2 1 3 5 5 C 1.53002 * 109.47216 * 239.99916 * 2 1 3 6 6 N 1.46502 * 109.47031 * 180.02562 * 5 2 1 7 7 C 1.46496 * 119.99997 * 269.99908 * 6 5 2 8 8 C 1.34781 * 119.99848 * 89.99709 * 6 5 2 9 9 O 1.21581 * 120.00130 * 0.02562 * 8 6 5 10 10 N 1.34776 * 119.99707 * 179.97438 * 8 6 5 11 11 C 1.39939 * 119.99879 * 175.42881 * 10 8 6 12 12 C 1.38965 * 120.03310 * 35.13068 * 11 10 8 13 13 C 1.38159 * 120.06709 * 180.02562 * 12 11 10 14 14 C 1.38174 * 120.13776 * 359.69495 * 13 12 11 15 15 C 1.38908 * 120.06806 * 0.55381 * 14 13 12 16 16 O 1.35748 * 120.03165 * 179.74369 * 15 14 13 17 17 C 1.34831 * 116.99877 * 174.35097 * 16 15 14 18 18 H 1.07996 * 120.00193 * 5.03897 * 17 16 15 19 19 C 1.38655 * 120.00076 * 185.03879 * 17 16 15 20 20 N 1.31553 * 119.99831 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00000 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47514 * 90.00101 * 21 19 17 23 23 H 1.48503 * 109.47161 * 210.00465 * 21 19 17 24 24 H 1.48508 * 109.47223 * 329.99837 * 21 19 17 25 25 C 1.38701 * 120.03834 * 215.14255 * 11 10 8 26 26 H 1.09000 * 109.47327 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47726 * 300.00149 * 1 2 3 28 28 H 1.09003 * 109.47361 * 60.00486 * 1 2 3 29 29 H 0.96706 * 113.99646 * 59.99653 * 4 2 1 30 30 H 1.08995 * 109.47051 * 60.00163 * 5 2 1 31 31 H 1.08997 * 109.47250 * 299.99775 * 5 2 1 32 32 H 1.09004 * 109.47379 * 269.99904 * 7 6 5 33 33 H 1.08999 * 109.47115 * 30.00112 * 7 6 5 34 34 H 1.09006 * 109.47179 * 149.99813 * 7 6 5 35 35 H 0.97000 * 120.00194 * 355.43834 * 10 8 6 36 36 H 1.08001 * 119.96766 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.93491 * 179.97438 * 13 12 11 38 38 H 1.07995 * 119.96408 * 180.30137 * 14 13 12 39 39 H 0.97005 * 119.99988 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.07067 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7218 -1.2489 7 6 4.2380 0.3768 -1.8829 8 6 4.1784 -1.7329 -0.6652 9 8 3.5700 -2.6449 -0.1394 10 7 5.5261 -1.7336 -0.6653 11 6 6.2254 -2.7318 0.0224 12 6 5.7203 -4.0255 0.0735 13 6 6.4098 -5.0114 0.7528 14 6 7.6062 -4.7162 1.3778 15 6 8.1137 -3.4239 1.3347 16 8 9.2865 -3.1335 1.9535 17 6 9.7816 -1.8921 1.7755 18 1 9.2095 -1.1555 1.2311 19 6 11.0253 -1.5611 2.2915 20 7 11.7224 -2.4585 2.9543 21 14 11.7114 0.1586 2.0443 22 1 11.2884 1.0273 3.1719 23 1 13.1944 0.0977 1.9957 24 1 11.1970 0.7182 0.7684 25 6 7.4231 -2.4311 0.6540 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.7209 -1.5953 1.2329 30 1 1.6767 -0.2075 -2.1392 31 1 1.6767 -1.7489 -1.2492 32 1 4.4199 0.1355 -2.9303 33 1 3.6492 1.2917 -1.8178 34 1 5.1904 0.5204 -1.3725 35 1 6.0115 -1.0422 -1.1420 36 1 4.7879 -4.2604 -0.4182 37 1 6.0151 -6.0159 0.7915 38 1 8.1453 -5.4902 1.9039 39 1 12.5924 -2.2268 3.3156 40 1 7.8174 -1.4263 0.6162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291493372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:11 Heat of formation + Delta-G solvation = -92.521672 kcal Electronic energy + Delta-G solvation = -23607.695264 eV Core-core repulsion = 20001.956779 eV Total energy + Delta-G solvation = -3605.738485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79773 -40.54223 -38.87713 -37.90937 -36.29040 -35.52403 -34.20792 -32.29605 -30.91830 -30.13180 -28.37380 -27.37205 -26.66838 -23.58734 -23.46448 -22.51760 -21.07910 -19.88805 -19.54025 -18.75167 -17.80605 -17.27518 -16.78555 -16.67604 -16.59346 -16.06115 -15.94217 -15.58590 -15.48338 -14.97264 -14.92800 -14.55282 -14.24539 -13.97642 -13.56160 -13.50590 -13.28960 -13.05465 -12.95944 -12.71937 -12.67123 -12.54013 -12.40956 -12.10642 -11.89009 -11.44376 -11.25967 -11.23774 -10.95432 -10.69848 -9.64222 -9.27793 -8.81263 -8.45045 -6.13898 0.48161 0.74258 1.36027 1.45757 1.52583 1.53770 2.12489 2.19156 2.84785 2.87071 3.19594 3.51907 3.54927 3.86625 4.09661 4.13884 4.15296 4.31215 4.36405 4.44346 4.49241 4.59051 4.66884 4.75168 4.78363 4.84851 4.87609 5.04025 5.11503 5.13332 5.27481 5.33034 5.50749 5.58559 5.70123 5.71931 5.89006 6.03571 6.24375 6.77711 6.85740 6.99217 7.47964 7.79446 8.78133 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.003817 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.433482 B = 7334.684872 C = 8215.190905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 H 0.097 0.903 4 O -0.583 6.583 5 C 0.100 3.900 6 N -0.622 5.622 7 C 0.067 3.933 8 C 0.704 3.296 9 O -0.600 6.600 10 N -0.678 5.678 11 C 0.204 3.796 12 C -0.196 4.196 13 C -0.052 4.052 14 C -0.216 4.216 15 C 0.135 3.865 16 O -0.227 6.227 17 C -0.414 4.414 18 H 0.102 0.898 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.249 1.249 25 C -0.263 4.263 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.380 0.620 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.414 0.586 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.273 0.727 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.082 8.435 -13.222 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.019 3.981 3 H 0.115 0.885 4 O -0.390 6.390 5 C -0.023 4.023 6 N -0.358 5.358 7 C -0.075 4.075 8 C 0.406 3.594 9 O -0.479 6.479 10 N -0.327 5.327 11 C 0.109 3.891 12 C -0.217 4.217 13 C -0.071 4.071 14 C -0.236 4.236 15 C 0.084 3.916 16 O -0.134 6.134 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.173 1.173 25 C -0.285 4.285 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.228 0.772 30 H 0.140 0.860 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.253 0.747 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.972 8.288 -12.547 24.999 hybrid contribution 0.698 0.370 0.003 0.790 sum -19.274 8.657 -12.544 24.572 Atomic orbital electron populations 1.22365 0.94119 1.03137 1.03643 1.22512 0.94316 0.96580 0.84673 0.88515 1.86558 1.78097 1.29728 1.44602 1.22309 0.77387 1.02758 0.99822 1.46976 1.07114 1.22549 1.59153 1.22055 0.97320 0.89879 0.98266 1.15942 0.81171 0.83071 0.79193 1.90819 1.67868 1.38038 1.51169 1.42597 1.05223 1.30426 1.54451 1.17231 0.90818 0.88141 0.92941 1.20996 1.02566 0.91261 1.06906 1.20941 0.92053 0.99877 0.94193 1.20481 0.99979 0.94030 1.09086 1.19563 0.86696 0.94178 0.91166 1.83973 1.32413 1.33883 1.63089 1.21807 1.02689 0.86727 1.37763 0.88093 1.26595 0.95173 1.04661 0.95575 1.70189 1.13400 1.36661 1.35634 0.84595 0.77585 0.74330 0.79738 1.19074 1.19613 1.17254 1.20791 0.99475 1.00287 1.07905 0.91997 0.92214 0.89182 0.77159 0.85972 0.90593 0.90450 0.88152 0.91779 0.74683 0.84674 0.82845 0.86325 0.91845 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.53 71.98 0.69 -1.27 16 2 C 0.08 1.31 3.86 30.59 0.12 1.42 16 3 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 4 O -0.58 -15.27 12.15 -140.65 -1.71 -16.98 16 5 C 0.10 1.52 5.15 86.38 0.44 1.96 16 6 N -0.62 -12.43 2.83 -864.91 -2.45 -14.88 16 7 C 0.07 0.82 10.16 127.77 1.30 2.12 16 8 C 0.70 20.91 7.63 179.05 1.37 22.28 16 9 O -0.60 -21.26 12.14 4.35 0.05 -21.21 16 10 N -0.68 -20.91 5.17 -317.24 -1.64 -22.55 16 11 C 0.20 7.98 6.29 38.13 0.24 8.22 16 12 C -0.20 -7.50 8.69 22.43 0.19 -7.31 16 13 C -0.05 -1.95 10.03 22.24 0.22 -1.73 16 14 C -0.22 -9.66 9.99 22.42 0.22 -9.44 16 15 C 0.14 6.94 6.65 22.56 0.15 7.09 16 16 O -0.23 -13.84 9.76 -22.74 -0.22 -14.06 16 17 C -0.41 -24.15 9.49 67.92 0.64 -23.51 16 18 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 19 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 20 N -0.92 -56.76 13.67 21.61 0.30 -56.47 16 21 Si 1.02 42.53 29.55 68.60 2.03 44.56 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 25 C -0.26 -11.89 9.08 22.51 0.20 -11.68 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.38 9.46 8.44 -74.05 -0.63 8.83 16 30 H 0.12 0.91 8.07 -2.39 -0.02 0.89 16 31 H 0.08 1.38 7.42 -2.39 -0.02 1.37 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 34 H 0.06 0.88 6.44 -2.38 -0.02 0.87 16 35 H 0.41 10.25 6.62 -92.71 -0.61 9.64 16 36 H 0.14 4.98 6.22 -2.91 -0.02 4.96 16 37 H 0.15 4.52 8.06 -2.91 -0.02 4.49 16 38 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 39 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 40 H 0.13 5.61 5.64 -2.91 -0.02 5.59 16 Total: -1.00 -79.02 335.89 2.46 -76.56 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.15 Total: 37.68 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 6.26 Total: -12.66 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -3.79 Total: -93.89 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -1.88 Total: -52.24 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -79.02 2.46 -76.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291493372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.962 kcal (2) G-P(sol) polarization free energy of solvation -79.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds