Wall clock time and date at job start Tue Mar 31 2020 07:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 O 1.42905 * 109.47079 * 119.99508 * 2 1 3 5 5 C 1.42898 * 113.99615 * 150.00204 * 4 2 1 6 6 H 1.08998 * 109.47584 * 30.00005 * 5 4 2 7 7 C 1.53006 * 109.47129 * 269.99836 * 5 4 2 8 8 S 1.81399 * 109.46856 * 65.00396 * 7 5 4 9 9 C 1.81396 * 103.00061 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47388 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47360 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99834 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99930 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99468 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00115 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47479 * 89.99575 * 15 13 11 17 17 H 1.48499 * 109.47027 * 209.99744 * 15 13 11 18 18 H 1.48500 * 109.47313 * 329.99424 * 15 13 11 19 19 C 1.50698 * 109.47036 * 150.00364 * 5 4 2 20 20 C 1.38235 * 119.99997 * 39.72072 * 19 5 4 21 21 C 1.38240 * 119.99670 * 179.78946 * 20 19 5 22 22 C 1.38229 * 120.00155 * 0.44740 * 21 20 19 23 23 C 1.38238 * 120.00186 * 359.80732 * 22 21 20 24 24 C 1.38231 * 119.99812 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 29 29 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 30 30 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 31 31 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46867 * 184.99958 * 7 5 4 33 33 H 1.08996 * 109.47176 * 305.00407 * 7 5 4 34 34 H 1.09006 * 109.46969 * 300.00160 * 9 8 7 35 35 H 1.09003 * 109.47231 * 59.99504 * 9 8 7 36 36 H 1.08998 * 109.47468 * 300.00504 * 10 9 8 37 37 H 1.09006 * 109.46840 * 60.00604 * 10 9 8 38 38 H 0.97007 * 119.99350 * 180.02562 * 14 13 11 39 39 H 1.07996 * 120.00138 * 0.02562 * 20 19 5 40 40 H 1.08006 * 119.99654 * 180.27475 * 21 20 19 41 41 H 1.07998 * 120.00137 * 179.83680 * 22 21 20 42 42 H 1.07999 * 120.00163 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00175 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.2660 -1.3244 0.9887 6 1 3.8531 -0.7829 0.2469 7 6 3.0356 -2.7588 0.5088 8 16 2.2731 -2.7306 -1.1369 9 6 2.0826 -4.4915 -1.5286 10 6 1.4411 -4.6404 -2.9096 11 6 1.2835 -6.1033 -3.2353 12 1 1.6079 -6.8520 -2.5278 13 6 0.7240 -6.4859 -4.4360 14 7 0.5860 -7.7626 -4.7199 15 14 0.1622 -5.1909 -5.6593 16 1 1.2831 -4.8537 -6.5731 17 1 -0.9791 -5.7185 -6.4494 18 1 -0.2643 -3.9709 -4.9278 19 6 4.0097 -1.3465 2.2992 20 6 3.3277 -1.5887 3.4770 21 6 4.0107 -1.6133 4.6786 22 6 5.3741 -1.3867 4.7035 23 6 6.0553 -1.1394 3.5263 24 6 5.3731 -1.1192 2.3242 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 3.9901 -3.2826 0.4580 33 1 2.3752 -3.2737 1.2065 34 1 3.0612 -4.9717 -1.5284 35 1 1.4463 -4.9635 -0.7800 36 1 0.4626 -4.1603 -2.9094 37 1 2.0773 -4.1684 -3.6584 38 1 0.1927 -8.0318 -5.5648 39 1 2.2620 -1.7623 3.4579 40 1 3.4786 -1.8069 5.5983 41 1 5.9073 -1.4034 5.6425 42 1 7.1206 -0.9627 3.5456 43 1 5.9051 -0.9255 1.4045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292149799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:57 Heat of formation + Delta-G solvation = -42.360818 kcal Electronic energy + Delta-G solvation = -20956.609966 eV Core-core repulsion = 17899.339833 eV Total energy + Delta-G solvation = -3057.270133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80942 -38.17538 -33.94998 -33.70954 -31.49865 -31.23263 -31.01066 -29.33812 -27.21594 -25.62973 -24.06666 -22.83266 -21.29773 -21.20335 -20.42367 -17.44926 -16.99102 -16.81979 -16.03597 -15.44374 -14.86098 -14.80477 -14.52959 -14.30726 -14.19932 -13.72024 -13.56415 -13.41237 -13.12120 -12.76882 -12.58112 -12.40034 -12.24523 -12.15162 -11.96004 -11.76100 -11.44320 -11.22674 -11.16713 -11.09960 -10.70411 -10.32217 -10.07650 -9.86563 -9.77605 -9.41127 -9.10034 -9.04844 -8.88617 -8.60316 -7.27148 -6.11088 -4.10961 1.10047 1.23962 2.04820 3.06070 3.28843 3.36190 3.41178 3.47965 3.68443 4.40575 4.62696 4.71934 4.80739 4.88981 4.95636 4.97362 5.06533 5.12065 5.22919 5.26773 5.33372 5.38087 5.46084 5.60344 5.74529 5.76660 5.80056 5.84623 5.89027 5.90269 5.92120 6.01919 6.18322 6.27717 6.32402 6.34253 6.41908 6.54780 6.80559 7.10393 7.23210 7.25279 7.65732 8.42865 8.90843 9.49642 11.01767 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.003513 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.524384 B = 7968.401313 C = 8943.645167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 C -0.173 4.173 4 O -0.366 6.366 5 C 0.151 3.849 6 H 0.076 0.924 7 C -0.106 4.106 8 S -0.287 6.287 9 C -0.055 4.055 10 C 0.004 3.996 11 C -0.521 4.521 12 H 0.073 0.927 13 C 0.071 3.929 14 N -0.900 5.900 15 Si 0.879 3.121 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.263 1.263 19 C -0.080 4.080 20 C -0.089 4.089 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.109 4.109 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.020 0.980 38 H 0.265 0.735 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 17.661 16.350 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 C -0.231 4.231 4 O -0.285 6.285 5 C 0.092 3.908 6 H 0.094 0.906 7 C -0.254 4.254 8 S -0.059 6.059 9 C -0.203 4.203 10 C -0.035 4.035 11 C -0.560 4.560 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.538 5.538 15 Si 0.706 3.294 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.082 4.082 20 C -0.107 4.107 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.040 18.401 15.766 25.233 hybrid contribution 0.219 -0.628 -0.207 0.696 sum 7.260 17.773 15.559 24.711 Atomic orbital electron populations 1.21793 0.93382 1.03296 1.01680 1.22344 0.95426 0.91520 0.88813 1.22327 1.01211 0.97309 1.02265 1.87925 1.35283 1.69360 1.35939 1.20530 0.85730 0.91027 0.93560 0.90645 1.23964 1.03697 1.00296 0.97475 1.86592 1.82028 1.16750 1.20528 1.23533 1.03727 0.89617 1.03379 1.19348 0.95916 0.98326 0.89870 1.20977 1.41420 0.89894 1.03758 0.90877 1.24969 0.95021 0.95269 0.97890 1.69906 1.44803 1.15022 1.24095 0.86778 0.78735 0.82440 0.81456 1.20112 1.21203 1.18776 1.19667 0.93550 1.00740 0.94226 1.21051 1.00398 0.97608 0.91618 1.21189 0.94547 1.00499 0.97997 1.21177 0.94651 0.99778 0.98170 1.21085 0.99849 1.00714 0.92446 1.21007 0.93478 0.99860 0.98380 0.92554 0.91480 0.91211 0.89953 0.91699 0.92157 0.92861 0.89545 0.89472 0.90958 0.90813 0.95615 0.96140 0.92543 0.85393 0.86014 0.86184 0.85974 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.56 37.16 0.36 -1.35 16 2 C 0.08 0.95 2.59 -26.73 -0.07 0.89 16 3 C -0.17 -1.81 9.52 37.16 0.35 -1.46 16 4 O -0.37 -4.85 8.92 -35.23 -0.31 -5.17 16 5 C 0.15 1.87 2.45 -27.88 -0.07 1.80 16 6 H 0.08 0.91 7.48 -51.93 -0.39 0.52 16 7 C -0.11 -1.47 5.61 37.16 0.21 -1.26 16 8 S -0.29 -4.89 18.56 -107.50 -2.00 -6.89 16 9 C -0.06 -1.12 5.88 37.16 0.22 -0.90 16 10 C 0.00 0.10 4.05 -27.88 -0.11 -0.01 16 11 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 15 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 19 C -0.08 -0.92 4.97 -104.62 -0.52 -1.44 16 20 C -0.09 -0.98 9.36 -39.58 -0.37 -1.35 16 21 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 22 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 24 C -0.11 -1.10 9.67 -39.58 -0.38 -1.48 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.15 5.04 -41.96 -0.21 0.94 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.54 7.96 -51.93 -0.41 0.13 16 32 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 35 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 36 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.13 1.43 7.77 -52.49 -0.41 1.02 16 40 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -30.58 363.40 -10.01 -40.59 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.27 Total: 0.04 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -2.01 Total: -24.28 kcal Atomic # 7 Polarization: -27.60 SS G_CDS: 0.77 Total: -26.82 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.31 Total: -5.17 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -2.00 Total: -6.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.58 -10.01 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292149799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.774 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds