Wall clock time and date at job start Tue Mar 31 2020 07:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 O 1.42905 * 109.47079 * 119.99508 * 2 1 3 5 5 C 1.42898 * 113.99615 * 150.00204 * 4 2 1 6 6 H 1.08998 * 109.47584 * 30.00005 * 5 4 2 7 7 C 1.53006 * 109.47129 * 269.99836 * 5 4 2 8 8 S 1.81399 * 109.46856 * 65.00396 * 7 5 4 9 9 C 1.81396 * 103.00061 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47388 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47360 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99834 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99930 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99468 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00115 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47479 * 89.99575 * 15 13 11 17 17 H 1.48499 * 109.47027 * 209.99744 * 15 13 11 18 18 H 1.48500 * 109.47313 * 329.99424 * 15 13 11 19 19 C 1.50698 * 109.47036 * 150.00364 * 5 4 2 20 20 C 1.38235 * 119.99997 * 39.72072 * 19 5 4 21 21 C 1.38240 * 119.99670 * 179.78946 * 20 19 5 22 22 C 1.38229 * 120.00155 * 0.44740 * 21 20 19 23 23 C 1.38238 * 120.00186 * 359.80732 * 22 21 20 24 24 C 1.38231 * 119.99812 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 29 29 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 30 30 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 31 31 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46867 * 184.99958 * 7 5 4 33 33 H 1.08996 * 109.47176 * 305.00407 * 7 5 4 34 34 H 1.09006 * 109.46969 * 300.00160 * 9 8 7 35 35 H 1.09003 * 109.47231 * 59.99504 * 9 8 7 36 36 H 1.08998 * 109.47468 * 300.00504 * 10 9 8 37 37 H 1.09006 * 109.46840 * 60.00604 * 10 9 8 38 38 H 0.97007 * 119.99350 * 180.02562 * 14 13 11 39 39 H 1.07996 * 120.00138 * 0.02562 * 20 19 5 40 40 H 1.08006 * 119.99654 * 180.27475 * 21 20 19 41 41 H 1.07998 * 120.00137 * 179.83680 * 22 21 20 42 42 H 1.07999 * 120.00163 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00175 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.2660 -1.3244 0.9887 6 1 3.8531 -0.7829 0.2469 7 6 3.0356 -2.7588 0.5088 8 16 2.2731 -2.7306 -1.1369 9 6 2.0826 -4.4915 -1.5286 10 6 1.4411 -4.6404 -2.9096 11 6 1.2835 -6.1033 -3.2353 12 1 1.6079 -6.8520 -2.5278 13 6 0.7240 -6.4859 -4.4360 14 7 0.5860 -7.7626 -4.7199 15 14 0.1622 -5.1909 -5.6593 16 1 1.2831 -4.8537 -6.5731 17 1 -0.9791 -5.7185 -6.4494 18 1 -0.2643 -3.9709 -4.9278 19 6 4.0097 -1.3465 2.2992 20 6 3.3277 -1.5887 3.4770 21 6 4.0107 -1.6133 4.6786 22 6 5.3741 -1.3867 4.7035 23 6 6.0553 -1.1394 3.5263 24 6 5.3731 -1.1192 2.3242 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 3.9901 -3.2826 0.4580 33 1 2.3752 -3.2737 1.2065 34 1 3.0612 -4.9717 -1.5284 35 1 1.4463 -4.9635 -0.7800 36 1 0.4626 -4.1603 -2.9094 37 1 2.0773 -4.1684 -3.6584 38 1 0.1927 -8.0318 -5.5648 39 1 2.2620 -1.7623 3.4579 40 1 3.4786 -1.8069 5.5983 41 1 5.9073 -1.4034 5.6425 42 1 7.1206 -0.9627 3.5456 43 1 5.9051 -0.9255 1.4045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292149799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:56 Heat of formation + Delta-G solvation = -57.248962 kcal Electronic energy + Delta-G solvation = -20957.255564 eV Core-core repulsion = 17899.339833 eV Total energy + Delta-G solvation = -3057.915732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64282 -39.05799 -35.76986 -34.85621 -33.29617 -32.38203 -31.74477 -30.29506 -28.09206 -27.60620 -25.06255 -23.57764 -22.83121 -22.15729 -21.66118 -19.15237 -18.32469 -17.70657 -17.14671 -16.47728 -16.41306 -15.88596 -15.72796 -15.58625 -15.38689 -14.84012 -14.74549 -14.65552 -14.23769 -14.08262 -13.85280 -13.57424 -13.30043 -13.22197 -13.03388 -13.01251 -12.79898 -12.39030 -12.17222 -12.10385 -12.03649 -11.91810 -11.79541 -11.56407 -11.39585 -10.91741 -10.82168 -10.34705 -9.81646 -9.70957 -8.64964 -8.34895 -6.40773 0.30566 0.50841 0.73914 1.34345 1.35996 1.48500 1.63303 2.32551 2.58547 2.88400 3.00181 3.76094 3.82910 3.88704 4.08742 4.12785 4.15841 4.18550 4.20356 4.26030 4.26486 4.32513 4.43876 4.62517 4.66112 4.72854 4.77156 4.77841 4.91762 4.95190 5.01528 5.05056 5.16407 5.17185 5.29245 5.30135 5.38946 5.52115 5.56084 5.62415 5.63902 6.09546 6.17649 6.29061 6.64871 7.23864 8.81395 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.003513 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.524384 B = 7968.401313 C = 8943.645167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 C -0.168 4.168 4 O -0.376 6.376 5 C 0.157 3.843 6 H 0.080 0.920 7 C -0.097 4.097 8 S -0.275 6.275 9 C -0.059 4.059 10 C 0.012 3.988 11 C -0.534 4.534 12 H 0.036 0.964 13 C 0.011 3.989 14 N -0.946 5.946 15 Si 0.948 3.052 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.249 1.249 19 C -0.096 4.096 20 C -0.106 4.106 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.117 4.117 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 20.281 17.041 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 C -0.225 4.225 4 O -0.296 6.296 5 C 0.098 3.902 6 H 0.098 0.902 7 C -0.245 4.245 8 S -0.047 6.047 9 C -0.207 4.207 10 C -0.027 4.027 11 C -0.573 4.573 12 H 0.054 0.946 13 C -0.187 4.187 14 N -0.586 5.586 15 Si 0.771 3.229 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.173 1.173 19 C -0.098 4.098 20 C -0.124 4.124 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.135 4.135 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.992 21.022 16.464 27.872 hybrid contribution -0.009 -1.458 -0.265 1.482 sum 7.984 19.564 16.199 26.625 Atomic orbital electron populations 1.21797 0.93083 1.02368 1.02775 1.22421 0.95774 0.92541 0.87808 1.22269 1.01312 0.95840 1.03083 1.87927 1.35770 1.69541 1.36339 1.20501 0.85602 0.89645 0.94456 0.90207 1.24077 1.03564 1.01878 0.95030 1.86525 1.82639 1.12618 1.22900 1.23261 1.03109 0.93041 1.01258 1.19170 0.96152 0.95243 0.92134 1.21296 1.41052 0.91727 1.03237 0.94570 1.25939 0.95084 0.97554 1.00117 1.70048 1.46098 1.17368 1.25069 0.85681 0.78654 0.79743 0.78806 1.18880 1.20504 1.17297 1.19638 0.94191 1.02384 0.93577 1.21105 1.00213 0.98645 0.92418 1.21446 0.95220 1.00108 0.98070 1.21543 0.94427 0.98480 0.99332 1.21433 1.01124 0.99730 0.92005 1.21229 0.93002 0.99733 0.99578 0.91704 0.90171 0.93108 0.91545 0.90408 0.91788 0.92660 0.88667 0.89949 0.91151 0.91446 0.95780 0.95812 0.92204 0.86345 0.84324 0.83633 0.83556 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.56 71.98 0.69 -2.53 16 2 C 0.07 1.71 2.59 30.60 0.08 1.79 16 3 C -0.17 -3.17 9.52 71.98 0.69 -2.49 16 4 O -0.38 -9.68 8.92 -148.98 -1.33 -11.01 16 5 C 0.16 3.74 2.45 29.85 0.07 3.82 16 6 H 0.08 1.81 7.48 -2.39 -0.02 1.80 16 7 C -0.10 -2.63 5.61 71.98 0.40 -2.22 16 8 S -0.28 -9.19 18.56 -56.49 -1.05 -10.24 16 9 C -0.06 -2.41 5.88 71.98 0.42 -1.99 16 10 C 0.01 0.56 4.05 29.85 0.12 0.68 16 11 C -0.53 -31.17 9.66 25.60 0.25 -30.92 16 12 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 13 C 0.01 0.64 5.47 84.65 0.46 1.11 16 14 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 15 Si 0.95 44.63 27.47 68.60 1.88 46.52 16 16 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 19 C -0.10 -2.08 4.97 -19.86 -0.10 -2.18 16 20 C -0.11 -2.26 9.36 22.27 0.21 -2.05 16 21 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 22 C -0.12 -1.78 10.05 22.27 0.22 -1.56 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.12 -2.13 9.67 22.27 0.22 -1.92 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 1.78 5.04 -8.72 -0.04 1.73 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.02 7.96 -2.39 -0.02 1.00 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.02 1.16 7.20 -2.39 -0.02 1.15 16 37 H 0.02 1.13 7.57 -2.38 -0.02 1.11 16 38 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 39 H 0.12 2.66 7.77 -2.91 -0.02 2.64 16 40 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.13 2.03 8.04 -2.91 -0.02 2.01 16 Total: -1.00 -66.53 363.40 4.85 -61.68 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.86 Total: 16.33 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 4.18 Total: -44.18 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.30 Total: -59.10 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.33 Total: -11.01 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.05 Total: -10.24 kcal Total: -66.53 4.85 -61.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292149799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.427 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds