Wall clock time and date at job start Tue Mar 31 2020 07:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34818 * 117.00187 * 2 1 4 4 O 1.21535 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.47144 * 120.00175 * 179.97438 * 3 2 1 6 6 C 1.37999 * 125.91267 * 179.97438 * 5 3 2 7 7 C 1.39420 * 107.45055 * 180.02562 * 6 5 3 8 8 C 1.37942 * 107.47592 * 0.02562 * 7 6 5 9 9 C 1.47330 * 125.89195 * 179.97438 * 8 7 6 10 10 O 1.21604 * 120.00180 * 187.12474 * 9 8 7 11 11 N 1.34780 * 119.99654 * 7.12525 * 9 8 7 12 12 C 1.46500 * 120.00133 * 5.73796 * 11 9 8 13 13 C 1.46497 * 119.99767 * 185.73308 * 11 9 8 14 14 H 1.09001 * 109.47076 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.46881 * 119.99778 * 13 11 9 16 16 C 1.50698 * 109.47450 * 240.00425 * 13 11 9 17 17 H 1.08002 * 119.99700 * 0.02562 * 16 13 11 18 18 C 1.37871 * 120.00090 * 180.02562 * 16 13 11 19 19 N 1.31516 * 120.00003 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 120.00150 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47144 * 90.00085 * 20 18 16 22 22 H 1.48495 * 109.47303 * 210.00424 * 20 18 16 23 23 H 1.48503 * 109.47009 * 330.00262 * 20 18 16 24 24 N 1.36709 * 108.21688 * 0.26436 * 8 7 6 25 25 C 1.46501 * 125.65808 * 179.73478 * 24 8 7 26 26 H 1.08999 * 109.47019 * 59.99635 * 1 2 3 27 27 H 1.09006 * 109.47080 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46853 * 299.99579 * 1 2 3 29 29 H 1.07999 * 126.27268 * 359.97438 * 6 5 3 30 30 H 1.08000 * 126.26280 * 179.97438 * 7 6 5 31 31 H 1.08995 * 109.46971 * 275.78852 * 12 11 9 32 32 H 1.08998 * 109.47098 * 35.78574 * 12 11 9 33 33 H 1.08996 * 109.46930 * 155.78437 * 12 11 9 34 34 H 1.09001 * 109.46943 * 179.97438 * 15 13 11 35 35 H 1.09001 * 109.46748 * 60.00433 * 15 13 11 36 36 H 1.08992 * 109.47850 * 300.00215 * 15 13 11 37 37 H 0.97001 * 119.99757 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.47047 * 94.65741 * 25 24 8 39 39 H 1.08999 * 109.47187 * 214.65296 * 25 24 8 40 40 H 1.08994 * 109.47418 * 334.65581 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4021 2.2205 0.0005 5 6 3.5335 1.2782 0.0006 6 6 4.2833 2.4367 0.0001 7 6 5.6270 2.0650 0.0003 8 6 5.6755 0.6865 0.0003 9 6 6.8987 -0.1348 0.0000 10 8 6.8210 -1.3413 -0.1306 11 7 8.1038 0.4512 0.1444 12 6 8.1915 1.8860 0.4272 13 6 9.3260 -0.3467 0.0187 14 1 9.0631 -1.3835 -0.1910 15 6 10.1790 0.2041 -1.1258 16 6 10.1065 -0.2764 1.3059 17 1 9.7295 0.3041 2.1350 18 6 11.3016 -0.9533 1.4253 19 7 11.7604 -1.6607 0.4159 20 14 12.2694 -0.8657 3.0206 21 1 11.8415 -1.9669 3.9204 22 1 13.7191 -1.0003 2.7283 23 1 12.0170 0.4400 3.6816 24 7 4.3928 0.2137 -0.0059 25 6 4.0031 -1.1985 -0.0135 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.8995 3.4462 -0.0011 30 1 6.4749 2.7340 -0.0003 31 1 8.1346 2.4445 -0.5070 32 1 7.3668 2.1793 1.0767 33 1 9.1383 2.1014 0.9225 34 1 11.0886 -0.3893 -1.2190 35 1 10.4420 1.2410 -0.9164 36 1 9.6146 0.1533 -2.0568 37 1 12.6011 -2.1372 0.5000 38 1 3.8227 -1.5311 1.0087 39 1 3.0934 -1.3212 -0.6013 40 1 4.8030 -1.7938 -0.4536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293207477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:25 Heat of formation + Delta-G solvation = -66.298375 kcal Electronic energy + Delta-G solvation = -23938.422116 eV Core-core repulsion = 20333.820758 eV Total energy + Delta-G solvation = -3604.601358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.81173 -41.21522 -40.09541 -37.63979 -37.28332 -35.10545 -33.79948 -32.06027 -30.55518 -28.52251 -28.31203 -27.28232 -27.24402 -25.30008 -23.12779 -22.13535 -21.07154 -20.27714 -18.92805 -18.47668 -18.15157 -17.66730 -17.40927 -17.29311 -16.62197 -16.41079 -15.67716 -15.36585 -15.07688 -14.76588 -14.41862 -14.35574 -14.24010 -14.10066 -13.90615 -13.52967 -13.28596 -13.20156 -12.96256 -12.89173 -12.74005 -12.69016 -12.21887 -12.11929 -12.08196 -11.89377 -11.83521 -11.19270 -10.82961 -10.50255 -9.92061 -9.59883 -9.31160 -8.13802 -6.29796 -0.20630 0.97767 1.31795 1.43862 1.45358 1.54936 1.65010 1.95364 2.27583 2.36157 2.50506 3.15064 3.47902 3.61883 3.85735 4.15059 4.26707 4.30491 4.33093 4.40844 4.44861 4.65282 4.73070 4.73157 4.76871 4.87038 4.93397 4.96978 5.05130 5.10716 5.15156 5.41924 5.48824 5.62525 5.67179 5.75674 5.84796 6.03105 6.16500 6.54128 6.71502 6.76992 7.21255 7.42947 8.90683 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030183 B = 0.003522 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.462386 B = 7948.853008 C = 8165.884285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.544 3.456 4 O -0.517 6.517 5 C -0.036 4.036 6 C -0.108 4.108 7 C -0.164 4.164 8 C -0.010 4.010 9 C 0.561 3.439 10 O -0.596 6.596 11 N -0.578 5.578 12 C 0.059 3.941 13 C 0.265 3.735 14 H 0.013 0.987 15 C -0.133 4.133 16 C -0.539 4.539 17 H 0.063 0.937 18 C 0.018 3.982 19 N -0.916 5.916 20 Si 0.963 3.037 21 H -0.284 1.284 22 H -0.281 1.281 23 H -0.261 1.261 24 N -0.388 5.388 25 C 0.059 3.941 26 H 0.067 0.933 27 H 0.134 0.866 28 H 0.067 0.933 29 H 0.180 0.820 30 H 0.201 0.799 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.022 0.978 37 H 0.265 0.735 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.646 7.753 -0.914 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.390 3.610 4 O -0.406 6.406 5 C -0.150 4.150 6 C -0.133 4.133 7 C -0.189 4.189 8 C -0.130 4.130 9 C 0.350 3.650 10 O -0.479 6.479 11 N -0.307 5.307 12 C -0.083 4.083 13 C 0.164 3.836 14 H 0.031 0.969 15 C -0.192 4.192 16 C -0.577 4.577 17 H 0.081 0.919 18 C -0.182 4.182 19 N -0.555 5.555 20 Si 0.788 3.212 21 H -0.210 1.210 22 H -0.206 1.206 23 H -0.185 1.185 24 N -0.061 5.061 25 C -0.081 4.081 26 H 0.086 0.914 27 H 0.152 0.848 28 H 0.085 0.915 29 H 0.197 0.803 30 H 0.217 0.783 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.873 6.917 -1.037 19.193 hybrid contribution 0.538 -0.571 0.654 1.021 sum -17.335 6.346 -0.383 18.464 Atomic orbital electron populations 1.23644 0.73644 1.06037 1.03025 1.86614 1.25907 1.31389 1.83980 1.19836 0.86586 0.82076 0.72514 1.90857 1.65637 1.36461 1.47633 1.19815 0.87119 0.88417 1.19683 1.21610 0.91702 0.97535 1.02473 1.22587 0.98871 0.91895 1.05525 1.20408 0.84270 0.94527 1.13777 1.17600 0.83405 0.86378 0.77622 1.90671 1.87027 1.16005 1.54227 1.47922 1.05103 1.11191 1.66478 1.22617 1.04582 0.79039 1.02017 1.18629 0.79897 0.90084 0.95032 0.96921 1.21894 1.00993 1.00733 0.95562 1.21569 1.05634 1.31354 0.99159 0.91916 1.25690 0.98275 0.94472 0.99794 1.70014 1.21497 1.31781 1.32238 0.85479 0.77584 0.78749 0.79351 1.21018 1.20624 1.18458 1.44012 1.04228 1.07734 1.50100 1.22581 1.03637 0.76951 1.04977 0.91386 0.84839 0.91471 0.80262 0.78296 0.89974 0.88358 0.90535 0.91214 0.93025 0.95930 0.92613 0.89597 0.86898 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.36 -7.49 8.05 -57.31 -0.46 -7.95 16 3 C 0.54 13.76 7.94 70.16 0.56 14.32 16 4 O -0.52 -14.49 16.67 19.72 0.33 -14.16 16 5 C -0.04 -0.98 6.87 40.65 0.28 -0.70 16 6 C -0.11 -2.58 10.60 22.50 0.24 -2.34 16 7 C -0.16 -4.20 8.71 22.48 0.20 -4.01 16 8 C -0.01 -0.34 6.71 40.71 0.27 -0.07 16 9 C 0.56 23.61 7.65 86.63 0.66 24.27 16 10 O -0.60 -29.44 13.84 -4.04 -0.06 -29.49 16 11 N -0.58 -24.07 2.75 -830.82 -2.29 -26.36 16 12 C 0.06 1.76 7.58 127.77 0.97 2.73 16 13 C 0.27 13.45 2.62 44.25 0.12 13.57 16 14 H 0.01 0.78 6.91 -2.39 -0.02 0.76 16 15 C -0.13 -6.22 8.97 71.98 0.65 -5.57 16 16 C -0.54 -28.62 7.95 25.60 0.20 -28.41 16 17 H 0.06 3.23 7.43 -2.91 -0.02 3.21 16 18 C 0.02 0.94 5.30 84.65 0.45 1.39 16 19 N -0.92 -51.82 11.32 21.45 0.24 -51.58 16 20 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 N -0.39 -11.70 3.17 -520.55 -1.65 -13.35 16 25 C 0.06 1.59 10.03 127.77 1.28 2.87 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.20 3.98 4.33 -2.91 -0.01 3.96 16 31 H 0.08 1.97 7.35 -2.39 -0.02 1.95 16 32 H 0.10 2.45 5.29 -2.39 -0.01 2.44 16 33 H 0.08 2.45 7.11 -2.39 -0.02 2.43 16 34 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 35 H 0.05 2.15 7.67 -2.39 -0.02 2.14 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.11 2.47 6.41 -2.39 -0.02 2.45 16 40 H 0.09 2.98 5.89 -2.39 -0.01 2.97 16 Total: -1.00 -70.22 329.70 6.28 -63.94 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.07 Total: 15.02 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 7.07 Total: 19.62 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -3.69 Total: -91.29 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -0.19 Total: -51.61 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -70.22 6.28 -63.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293207477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.361 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds