Wall clock time and date at job start Tue Mar 31 2020 07:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 N 1.46503 * 109.46815 * 173.65008 * 3 2 1 5 5 C 1.36650 * 119.99825 * 95.31465 * 4 3 2 6 6 H 1.07999 * 120.00113 * 101.22892 * 5 4 3 7 7 C 1.39185 * 119.99738 * 280.95093 * 5 4 3 8 8 N 1.31281 * 119.99570 * 174.85064 * 7 5 4 9 9 Si 1.86797 * 120.00370 * 354.85481 * 7 5 4 10 10 H 1.48501 * 109.47112 * 98.63510 * 9 7 5 11 11 H 1.48490 * 109.47289 * 218.63930 * 9 7 5 12 12 H 1.48500 * 109.46841 * 338.64261 * 9 7 5 13 13 C 1.34777 * 119.99842 * 275.31359 * 4 3 2 14 14 O 1.21678 * 120.00354 * 8.91093 * 13 4 3 15 15 C 1.47101 * 119.99710 * 188.90987 * 13 4 3 16 16 C 1.38120 * 125.89942 * 125.51177 * 15 13 4 17 17 C 1.39316 * 107.49743 * 179.97438 * 16 15 13 18 18 C 1.38092 * 107.48625 * 359.97438 * 17 16 15 19 19 C 1.47036 * 125.90995 * 180.02562 * 18 17 16 20 20 O 1.21552 * 119.99872 * 5.10983 * 19 18 17 21 21 O 1.34833 * 119.99685 * 185.11830 * 19 18 17 22 22 C 1.45198 * 116.99801 * 180.02562 * 21 19 18 23 23 N 1.36791 * 125.90043 * 305.20398 * 15 13 4 24 24 C 1.46498 * 125.67983 * 359.97438 * 23 15 13 25 25 H 1.09004 * 109.46685 * 60.00055 * 1 2 3 26 26 H 1.09002 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47209 * 300.00285 * 1 2 3 28 28 H 1.09000 * 109.47090 * 240.00166 * 2 1 3 29 29 H 1.08994 * 109.46843 * 120.00002 * 2 1 3 30 30 H 1.08998 * 109.46914 * 53.65337 * 3 2 1 31 31 H 1.09000 * 109.47298 * 293.65284 * 3 2 1 32 32 H 0.97002 * 120.00005 * 185.00320 * 8 7 5 33 33 H 1.07996 * 126.24745 * 359.94060 * 16 15 13 34 34 H 1.07999 * 126.25747 * 179.97438 * 17 16 15 35 35 H 1.08993 * 109.47776 * 59.99840 * 22 21 19 36 36 H 1.09007 * 109.47295 * 179.97438 * 22 21 19 37 37 H 1.08999 * 109.47099 * 299.99589 * 22 21 19 38 38 H 1.08995 * 109.47583 * 106.60465 * 24 23 15 39 39 H 1.09004 * 109.46919 * 226.61108 * 24 23 15 40 40 H 1.09004 * 109.47402 * 346.60413 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4971 1.4453 0.1528 5 6 4.2996 1.5127 -0.9512 6 1 4.7571 2.4505 -1.2298 7 6 4.5321 0.3715 -1.7132 8 7 5.2193 0.4558 -2.8286 9 14 3.8664 -1.2801 -1.1489 10 1 2.6041 -1.5783 -1.8721 11 1 4.8646 -2.3409 -1.4374 12 1 3.6010 -1.2340 0.3115 13 6 4.0458 1.3814 1.3821 14 8 3.3441 1.1588 2.3509 15 6 5.4933 1.5808 1.5526 16 6 6.0908 2.4983 2.3946 17 6 7.4699 2.3595 2.2542 18 6 7.6943 1.3590 1.3292 19 6 9.0094 0.8813 0.8774 20 8 10.0224 1.3115 1.3934 21 8 9.0917 -0.0338 -0.1095 22 6 10.4225 -0.4600 -0.5039 23 7 6.4800 0.8855 0.9091 24 6 6.2723 -0.1861 -0.0679 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5869 1.9881 0.8277 31 1 1.7724 1.9226 -0.9413 32 1 5.3198 -0.3242 -3.3965 33 1 5.5818 3.1962 3.0428 34 1 8.2254 2.9301 2.7738 35 1 10.9298 -0.9056 0.3517 36 1 10.3460 -1.1961 -1.3042 37 1 10.9907 0.4013 -0.8551 38 1 6.5053 0.1827 -1.0668 39 1 6.9243 -1.0265 0.1704 40 1 5.2326 -0.5120 -0.0343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293805393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:23 Heat of formation + Delta-G solvation = -29.760601 kcal Electronic energy + Delta-G solvation = -25250.802906 eV Core-core repulsion = 21647.785945 eV Total energy + Delta-G solvation = -3603.016961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11715 -39.71091 -38.52366 -36.17976 -35.62694 -33.80159 -32.22811 -31.77619 -29.66024 -27.49573 -26.37272 -26.02469 -24.77703 -23.18859 -21.81471 -20.57592 -19.62435 -18.89801 -18.24220 -17.34332 -16.57666 -16.34391 -16.13955 -15.31165 -14.95677 -14.58962 -14.31033 -14.25245 -13.83190 -13.22709 -13.10662 -13.03482 -12.81077 -12.69408 -12.58741 -12.17697 -12.03033 -11.91840 -11.78343 -11.64460 -11.24720 -11.16329 -10.94997 -10.63732 -10.56144 -10.45051 -9.73672 -9.60675 -9.29208 -8.90251 -8.16973 -7.80327 -7.54629 -6.65308 -4.74420 1.54739 2.69394 2.81757 2.92393 2.97621 3.01080 3.28893 3.53571 3.69418 3.82986 4.27391 4.52090 5.05510 5.20372 5.27771 5.31286 5.43960 5.46289 5.56152 5.61915 5.75069 5.80732 5.87024 5.90434 6.05671 6.23366 6.25889 6.36349 6.39532 6.47537 6.48764 6.60795 6.61775 6.75879 7.13555 7.33085 7.43814 7.57837 7.79781 8.03265 8.18094 8.72624 8.92784 9.41788 10.34473 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.006726 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.388975 B = 4162.107696 C = 5110.642002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.168 4.168 3 C 0.116 3.884 4 N -0.468 5.468 5 C -0.363 4.363 6 H 0.098 0.902 7 C 0.080 3.920 8 N -0.859 5.859 9 Si 0.877 3.123 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.255 1.255 13 C 0.562 3.438 14 O -0.564 6.564 15 C 0.064 3.936 16 C -0.178 4.178 17 C -0.107 4.107 18 C -0.050 4.050 19 C 0.543 3.457 20 O -0.512 6.512 21 O -0.355 6.355 22 C 0.038 3.962 23 N -0.364 5.364 24 C 0.059 3.941 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.280 0.720 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -2.342 1.934 3.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C -0.006 4.006 4 N -0.190 5.190 5 C -0.491 4.491 6 H 0.116 0.884 7 C -0.127 4.127 8 N -0.493 5.493 9 Si 0.708 3.292 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.181 1.181 13 C 0.349 3.651 14 O -0.445 6.445 15 C -0.059 4.059 16 C -0.202 4.202 17 C -0.134 4.134 18 C -0.162 4.162 19 C 0.389 3.611 20 O -0.401 6.401 21 O -0.272 6.272 22 C -0.056 4.056 23 N -0.036 5.036 24 C -0.080 4.080 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.146 0.854 39 H 0.084 0.916 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.084 -2.749 2.081 4.029 hybrid contribution -0.099 -0.977 -0.201 1.003 sum 1.985 -3.726 1.880 4.622 Atomic orbital electron populations 1.21648 0.95620 1.01120 1.01615 1.22522 0.96123 0.99481 1.02411 1.21620 0.82107 0.95321 1.01601 1.43483 1.04691 1.66328 1.04513 1.18930 1.28597 0.97309 1.04256 0.88444 1.26094 0.93052 0.98579 0.95007 1.69605 1.37332 1.31680 1.10693 0.87341 0.77754 0.83632 0.80508 1.20076 1.21449 1.18077 1.18068 0.85081 0.77680 0.84249 1.90712 1.62285 1.50951 1.40527 1.20720 0.89213 0.98209 0.97721 1.20960 0.92840 1.02761 1.03683 1.20979 0.95990 0.97784 0.98624 1.19253 0.82625 1.05977 1.08381 1.19973 0.88147 0.76206 0.76749 1.90820 1.36218 1.56826 1.56244 1.86697 1.33689 1.55463 1.51336 1.23229 0.81453 1.00349 1.00528 1.43970 1.04095 1.26543 1.28992 1.23405 1.01832 0.88140 0.94658 0.92753 0.93244 0.92612 0.91685 0.91243 0.91752 0.90288 0.90881 0.83474 0.83305 0.92094 0.88180 0.91831 0.85354 0.91554 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.17 -3.23 4.26 -26.73 -0.11 -3.35 16 3 C 0.12 2.34 5.18 -4.04 -0.02 2.32 16 4 N -0.47 -10.74 1.62 -116.16 -0.19 -10.93 16 5 C -0.36 -8.86 7.17 -15.05 -0.11 -8.97 16 6 H 0.10 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.08 1.92 2.95 -17.44 -0.05 1.87 16 8 N -0.86 -21.31 12.99 55.51 0.72 -20.59 16 9 Si 0.88 19.33 19.52 -169.99 -3.32 16.01 16 10 H -0.27 -5.87 6.24 56.52 0.35 -5.52 16 11 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.26 -5.83 5.50 56.52 0.31 -5.52 16 13 C 0.56 13.20 6.48 -12.66 -0.08 13.11 16 14 O -0.56 -13.98 16.60 5.21 0.09 -13.89 16 15 C 0.06 1.42 5.84 -82.10 -0.48 0.94 16 16 C -0.18 -3.45 10.82 -39.22 -0.42 -3.87 16 17 C -0.11 -1.98 10.60 -39.23 -0.42 -2.39 16 18 C -0.05 -0.99 6.87 -82.08 -0.56 -1.56 16 19 C 0.54 10.29 7.92 34.30 0.27 10.56 16 20 O -0.51 -9.99 16.67 -19.30 -0.32 -10.31 16 21 O -0.36 -6.15 8.48 -40.86 -0.35 -6.49 16 22 C 0.04 0.48 10.57 101.05 1.07 1.55 16 23 N -0.36 -7.87 3.02 -115.87 -0.35 -8.22 16 24 C 0.06 1.28 6.22 59.85 0.37 1.65 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.34 3.15 -51.93 -0.16 1.18 16 29 H 0.07 1.46 6.79 -51.93 -0.35 1.11 16 30 H 0.06 1.24 7.73 -51.93 -0.40 0.84 16 31 H 0.08 1.51 8.00 -51.93 -0.42 1.09 16 32 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 33 H 0.15 2.50 8.06 -52.49 -0.42 2.07 16 34 H 0.15 2.35 8.06 -52.49 -0.42 1.92 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.13 2.95 5.51 -51.93 -0.29 2.66 16 39 H 0.07 1.27 7.32 -51.93 -0.38 0.89 16 40 H 0.08 1.79 1.27 -51.93 -0.07 1.72 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -28.09 313.64 -4.31 -32.41 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.14 Total: 7.21 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -0.18 Total: 10.08 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.18 Total: -39.74 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.58 Total: -30.69 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -3.32 Total: 16.01 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.09 -4.31 -32.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293805393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.648 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds