Wall clock time and date at job start Tue Mar 31 2020 07:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 N 1.46503 * 109.46815 * 173.65008 * 3 2 1 5 5 C 1.36650 * 119.99825 * 95.31465 * 4 3 2 6 6 H 1.07999 * 120.00113 * 101.22892 * 5 4 3 7 7 C 1.39185 * 119.99738 * 280.95093 * 5 4 3 8 8 N 1.31281 * 119.99570 * 174.85064 * 7 5 4 9 9 Si 1.86797 * 120.00370 * 354.85481 * 7 5 4 10 10 H 1.48501 * 109.47112 * 98.63510 * 9 7 5 11 11 H 1.48490 * 109.47289 * 218.63930 * 9 7 5 12 12 H 1.48500 * 109.46841 * 338.64261 * 9 7 5 13 13 C 1.34777 * 119.99842 * 275.31359 * 4 3 2 14 14 O 1.21678 * 120.00354 * 8.91093 * 13 4 3 15 15 C 1.47101 * 119.99710 * 188.90987 * 13 4 3 16 16 C 1.38120 * 125.89942 * 125.51177 * 15 13 4 17 17 C 1.39316 * 107.49743 * 179.97438 * 16 15 13 18 18 C 1.38092 * 107.48625 * 359.97438 * 17 16 15 19 19 C 1.47036 * 125.90995 * 180.02562 * 18 17 16 20 20 O 1.21552 * 119.99872 * 5.10983 * 19 18 17 21 21 O 1.34833 * 119.99685 * 185.11830 * 19 18 17 22 22 C 1.45198 * 116.99801 * 180.02562 * 21 19 18 23 23 N 1.36791 * 125.90043 * 305.20398 * 15 13 4 24 24 C 1.46498 * 125.67983 * 359.97438 * 23 15 13 25 25 H 1.09004 * 109.46685 * 60.00055 * 1 2 3 26 26 H 1.09002 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47209 * 300.00285 * 1 2 3 28 28 H 1.09000 * 109.47090 * 240.00166 * 2 1 3 29 29 H 1.08994 * 109.46843 * 120.00002 * 2 1 3 30 30 H 1.08998 * 109.46914 * 53.65337 * 3 2 1 31 31 H 1.09000 * 109.47298 * 293.65284 * 3 2 1 32 32 H 0.97002 * 120.00005 * 185.00320 * 8 7 5 33 33 H 1.07996 * 126.24745 * 359.94060 * 16 15 13 34 34 H 1.07999 * 126.25747 * 179.97438 * 17 16 15 35 35 H 1.08993 * 109.47776 * 59.99840 * 22 21 19 36 36 H 1.09007 * 109.47295 * 179.97438 * 22 21 19 37 37 H 1.08999 * 109.47099 * 299.99589 * 22 21 19 38 38 H 1.08995 * 109.47583 * 106.60465 * 24 23 15 39 39 H 1.09004 * 109.46919 * 226.61108 * 24 23 15 40 40 H 1.09004 * 109.47402 * 346.60413 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4971 1.4453 0.1528 5 6 4.2996 1.5127 -0.9512 6 1 4.7571 2.4505 -1.2298 7 6 4.5321 0.3715 -1.7132 8 7 5.2193 0.4558 -2.8286 9 14 3.8664 -1.2801 -1.1489 10 1 2.6041 -1.5783 -1.8721 11 1 4.8646 -2.3409 -1.4374 12 1 3.6010 -1.2340 0.3115 13 6 4.0458 1.3814 1.3821 14 8 3.3441 1.1588 2.3509 15 6 5.4933 1.5808 1.5526 16 6 6.0908 2.4983 2.3946 17 6 7.4699 2.3595 2.2542 18 6 7.6943 1.3590 1.3292 19 6 9.0094 0.8813 0.8774 20 8 10.0224 1.3115 1.3934 21 8 9.0917 -0.0338 -0.1095 22 6 10.4225 -0.4600 -0.5039 23 7 6.4800 0.8855 0.9091 24 6 6.2723 -0.1861 -0.0679 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5869 1.9881 0.8277 31 1 1.7724 1.9226 -0.9413 32 1 5.3198 -0.3242 -3.3965 33 1 5.5818 3.1962 3.0428 34 1 8.2254 2.9301 2.7738 35 1 10.9298 -0.9056 0.3517 36 1 10.3460 -1.1961 -1.3042 37 1 10.9907 0.4013 -0.8551 38 1 6.5053 0.1827 -1.0668 39 1 6.9243 -1.0265 0.1704 40 1 5.2326 -0.5120 -0.0343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293805393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:23 Heat of formation + Delta-G solvation = -46.763031 kcal Electronic energy + Delta-G solvation = -25251.540186 eV Core-core repulsion = 21647.785945 eV Total energy + Delta-G solvation = -3603.754242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.69315 -41.19167 -40.21148 -37.59311 -37.39782 -35.45323 -33.84576 -33.49159 -31.16395 -28.69608 -28.05564 -27.52514 -26.54374 -24.68251 -23.30825 -22.14382 -21.14556 -20.66920 -19.94023 -18.84077 -18.22906 -17.82249 -17.54488 -17.04077 -16.66500 -16.25400 -15.91815 -15.87460 -15.26085 -14.95120 -14.75773 -14.37668 -14.32267 -14.21099 -14.10911 -13.71314 -13.52055 -13.44031 -13.19722 -13.06711 -12.79631 -12.75362 -12.60022 -12.14927 -11.90382 -11.86957 -11.44885 -11.29433 -11.04885 -10.68453 -9.76107 -9.49940 -9.26644 -8.53406 -6.66540 -0.00243 1.07544 1.08034 1.18998 1.25240 1.55366 1.72434 1.92500 2.03849 2.08373 2.56988 2.66507 3.62060 3.66043 3.87138 3.98891 4.10279 4.16551 4.25697 4.30191 4.32093 4.37214 4.40842 4.65395 4.66523 4.69277 4.74370 4.91734 4.92344 5.03913 5.05287 5.17034 5.18377 5.29276 5.54438 5.61771 5.89314 5.95849 6.00691 6.16796 6.60379 6.83657 7.10256 7.58321 8.49668 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.006726 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.388975 B = 4162.107696 C = 5110.642002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.164 4.164 3 C 0.111 3.889 4 N -0.472 5.472 5 C -0.362 4.362 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.917 3.083 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.271 1.271 13 C 0.557 3.443 14 O -0.584 6.584 15 C 0.025 3.975 16 C -0.169 4.169 17 C -0.099 4.099 18 C -0.061 4.061 19 C 0.545 3.455 20 O -0.520 6.520 21 O -0.367 6.367 22 C 0.029 3.971 23 N -0.374 5.374 24 C 0.066 3.934 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.287 0.713 33 H 0.170 0.830 34 H 0.179 0.821 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -2.902 2.144 4.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.202 4.202 3 C -0.011 4.011 4 N -0.193 5.193 5 C -0.489 4.489 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.518 5.518 9 Si 0.746 3.254 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.198 1.198 13 C 0.346 3.654 14 O -0.467 6.467 15 C -0.097 4.097 16 C -0.193 4.193 17 C -0.125 4.125 18 C -0.174 4.174 19 C 0.392 3.608 20 O -0.410 6.410 21 O -0.284 6.284 22 C -0.063 4.063 23 N -0.047 5.047 24 C -0.075 4.075 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.187 0.813 34 H 0.196 0.804 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.201 -3.312 2.264 4.576 hybrid contribution -0.040 -0.756 -0.278 0.806 sum 2.161 -4.068 1.985 5.016 Atomic orbital electron populations 1.21632 0.92213 1.02596 1.02989 1.22448 0.99139 0.98058 1.00563 1.21790 0.80568 0.96407 1.02342 1.43597 1.05732 1.66014 1.04004 1.18533 1.29417 0.96265 1.04708 0.91895 1.26295 0.92850 1.00112 0.94639 1.69649 1.37963 1.32758 1.11470 0.86697 0.77962 0.81484 0.79218 1.19122 1.20257 1.19803 1.18306 0.85807 0.77230 0.84101 1.90675 1.63049 1.52021 1.40931 1.20843 0.88913 1.00161 0.99749 1.21318 0.93332 1.01954 1.02741 1.21350 0.96148 0.97133 0.97870 1.19724 0.82772 1.06284 1.08579 1.19820 0.87536 0.76441 0.77012 1.90807 1.36243 1.57277 1.56678 1.86672 1.36438 1.54745 1.50521 1.23622 0.79548 1.01247 1.01914 1.43981 1.04535 1.26847 1.29345 1.23210 1.01359 0.88813 0.94080 0.91134 0.91760 0.91523 0.93030 0.93438 0.90958 0.89449 0.90226 0.81300 0.80381 0.90945 0.85309 0.91424 0.87034 0.89632 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.16 -6.19 4.26 30.60 0.13 -6.06 16 3 C 0.11 4.42 5.18 86.38 0.45 4.87 16 4 N -0.47 -21.90 1.62 -639.64 -1.03 -22.93 16 5 C -0.36 -17.98 7.17 84.17 0.60 -17.37 16 6 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 7 C 0.07 3.24 2.95 85.00 0.25 3.49 16 8 N -0.88 -44.01 12.99 21.70 0.28 -43.73 16 9 Si 0.92 39.62 19.52 68.60 1.34 40.96 16 10 H -0.26 -10.89 6.24 99.48 0.62 -10.27 16 11 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.27 -12.42 5.50 99.48 0.55 -11.88 16 13 C 0.56 26.44 6.48 86.57 0.56 27.00 16 14 O -0.58 -29.15 16.60 -4.28 -0.07 -29.22 16 15 C 0.02 1.10 5.84 40.67 0.24 1.34 16 16 C -0.17 -6.37 10.82 22.50 0.24 -6.12 16 17 C -0.10 -3.49 10.60 22.49 0.24 -3.25 16 18 C -0.06 -2.39 6.87 40.62 0.28 -2.11 16 19 C 0.55 20.01 7.92 70.13 0.56 20.56 16 20 O -0.52 -19.42 16.67 19.66 0.33 -19.09 16 21 O -0.37 -12.22 8.48 -57.45 -0.49 -12.71 16 22 C 0.03 0.67 10.57 113.37 1.20 1.87 16 23 N -0.37 -16.16 3.02 -520.49 -1.57 -17.73 16 24 C 0.07 2.81 6.22 127.77 0.80 3.61 16 25 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 2.07 3.15 -2.39 -0.01 2.07 16 29 H 0.05 1.99 6.79 -2.39 -0.02 1.97 16 30 H 0.07 2.75 7.73 -2.39 -0.02 2.73 16 31 H 0.09 3.29 8.00 -2.39 -0.02 3.27 16 32 H 0.29 13.21 8.31 -92.71 -0.77 12.44 16 33 H 0.17 5.46 8.06 -2.91 -0.02 5.44 16 34 H 0.18 5.12 8.06 -2.91 -0.02 5.10 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 5.16 5.51 -2.39 -0.01 5.15 16 39 H 0.09 3.23 7.32 -2.39 -0.02 3.21 16 40 H 0.07 2.99 1.27 -2.38 0.00 2.99 16 Total: -1.00 -60.26 313.64 5.86 -54.40 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.82 Total: 25.33 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 6.25 Total: 24.72 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.32 Total: -84.38 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -0.23 Total: -61.02 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.34 Total: 40.96 kcal Total: -60.26 5.86 -54.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293805393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.636 kcal (2) G-P(sol) polarization free energy of solvation -60.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds