Wall clock time and date at job start Tue Mar 31 2020 08:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46881 * 2 1 4 4 C 1.46504 * 119.99859 * 270.00201 * 3 2 1 5 5 C 1.53001 * 109.46969 * 269.99863 * 4 3 2 6 6 O 1.42899 * 109.47142 * 64.99789 * 5 4 3 7 7 C 1.34775 * 120.00246 * 90.00017 * 3 2 1 8 8 O 1.21589 * 120.00079 * 180.02562 * 7 3 2 9 9 N 1.34776 * 120.00009 * 359.97438 * 7 3 2 10 10 C 1.39945 * 120.00335 * 174.69170 * 9 7 3 11 11 C 1.38957 * 120.03274 * 326.35028 * 10 9 7 12 12 C 1.38162 * 120.06560 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.13691 * 359.72203 * 12 11 10 14 14 C 1.38902 * 120.06833 * 0.55244 * 13 12 11 15 15 O 1.35755 * 120.03346 * 179.72219 * 14 13 12 16 16 C 1.34833 * 117.00051 * 173.81944 * 15 14 13 17 17 H 1.07999 * 120.00115 * 354.59913 * 16 15 14 18 18 C 1.38642 * 120.00186 * 174.59376 * 16 15 14 19 19 N 1.31559 * 120.00315 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99870 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47169 * 89.99871 * 20 18 16 22 22 H 1.48497 * 109.47209 * 209.99762 * 20 18 16 23 23 H 1.48504 * 109.46894 * 329.99923 * 20 18 16 24 24 C 1.38705 * 120.03300 * 146.36828 * 10 9 7 25 25 H 1.08996 * 109.46918 * 299.99847 * 1 2 3 26 26 H 1.08995 * 109.47180 * 60.00272 * 1 2 3 27 27 H 1.09008 * 109.46691 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47290 * 240.00055 * 2 1 3 29 29 H 1.08995 * 109.47180 * 119.99728 * 2 1 3 30 30 H 1.08990 * 109.47135 * 29.99535 * 4 3 2 31 31 H 1.09004 * 109.47227 * 150.00330 * 4 3 2 32 32 H 1.08996 * 109.47327 * 185.00020 * 5 4 3 33 33 H 1.09007 * 109.46904 * 304.99749 * 5 4 3 34 34 H 0.96702 * 114.00022 * 179.97438 * 6 5 4 35 35 H 0.97005 * 119.99995 * 354.69610 * 9 7 3 36 36 H 1.07999 * 119.96592 * 359.97438 * 11 10 9 37 37 H 1.07994 * 119.92778 * 179.97438 * 12 11 10 38 38 H 1.07993 * 119.96306 * 180.27536 * 13 12 11 39 39 H 0.97007 * 119.99795 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.07067 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8315 -1.7105 6 8 3.8943 0.4434 -1.9935 7 6 2.2429 2.0166 1.1672 8 8 2.6477 3.1632 1.1671 9 7 2.0178 1.3815 2.3344 10 6 2.3552 1.9996 3.5438 11 6 3.4633 2.8352 3.6123 12 6 3.7974 3.4453 4.8061 13 6 3.0280 3.2313 5.9337 14 6 1.9224 2.3926 5.8729 15 8 1.1702 2.1784 6.9826 16 6 0.0408 1.4585 6.8269 17 1 -0.2748 1.1558 5.8395 18 6 -0.7153 1.1069 7.9346 19 7 -1.8170 0.4040 7.7828 20 14 -0.1696 1.6310 9.6426 21 1 -0.7623 2.9532 9.9675 22 1 -0.6244 0.6268 10.6374 23 1 1.3116 1.7297 9.6804 24 6 1.5841 1.7783 4.6753 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0283 31 1 2.0954 3.1411 -1.1385 32 1 3.9155 2.4163 -2.6064 33 1 4.3862 2.1344 -0.9131 34 1 4.7898 0.2176 -2.2804 35 1 1.6220 0.4959 2.3362 36 1 4.0645 3.0073 2.7318 37 1 4.6593 4.0940 4.8570 38 1 3.2890 3.7131 6.8642 39 1 -2.3458 0.1577 8.5579 40 1 0.7223 1.1293 4.6245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298604842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:07 Heat of formation + Delta-G solvation = -67.296723 kcal Electronic energy + Delta-G solvation = -23602.755609 eV Core-core repulsion = 19998.110959 eV Total energy + Delta-G solvation = -3604.644650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61749 -39.01021 -37.50562 -36.54389 -35.64820 -34.23833 -32.33030 -31.36870 -29.70159 -29.06580 -28.02366 -25.19562 -23.61111 -23.48861 -21.74946 -21.44773 -19.50147 -18.52430 -17.76821 -17.71679 -17.32358 -16.42854 -15.70216 -15.18564 -15.08312 -14.68986 -14.34098 -14.14501 -13.97724 -13.86757 -13.62465 -13.56143 -13.08629 -12.88185 -12.29740 -12.25396 -12.15647 -12.06107 -11.67083 -11.62511 -11.29332 -11.11533 -10.94880 -10.66890 -10.34953 -10.26293 -9.93956 -9.63470 -9.47517 -8.83396 -8.77373 -7.73375 -7.23540 -6.40539 -4.07604 2.01188 2.32738 2.62838 3.23386 3.26949 3.30344 3.41929 3.90608 4.02009 4.25335 4.55277 4.76802 4.88027 4.91673 4.94361 5.06578 5.10175 5.13463 5.25511 5.49200 5.58210 5.62892 5.66352 5.70636 5.95971 6.03516 6.06464 6.18088 6.23964 6.38747 6.51286 6.79031 6.96147 7.16586 7.24901 7.27951 7.33215 7.64091 7.80420 7.98302 8.05191 8.64812 8.95196 9.58093 10.67262 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.003697 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.261431 B = 7571.615601 C = 8532.608283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 N -0.622 5.622 4 C 0.136 3.864 5 C 0.058 3.942 6 O -0.572 6.572 7 C 0.705 3.295 8 O -0.574 6.574 9 N -0.681 5.681 10 C 0.199 3.801 11 C -0.197 4.197 12 C -0.064 4.064 13 C -0.203 4.203 14 C 0.175 3.825 15 O -0.217 6.217 16 C -0.388 4.388 17 H 0.104 0.896 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.246 4.246 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.377 0.623 35 H 0.404 0.596 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.279 0.721 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.119 -1.080 -17.798 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.359 5.359 4 C 0.012 3.988 5 C -0.021 4.021 6 O -0.378 6.378 7 C 0.408 3.592 8 O -0.451 6.451 9 N -0.329 5.329 10 C 0.105 3.895 11 C -0.218 4.218 12 C -0.083 4.083 13 C -0.223 4.223 14 C 0.123 3.877 15 O -0.122 6.122 16 C -0.464 4.464 17 H 0.122 0.878 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.268 4.268 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.224 0.776 35 H 0.240 0.760 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.608 -0.327 -17.339 19.361 hybrid contribution 0.267 -0.414 0.434 0.657 sum 8.875 -0.741 -16.905 19.107 Atomic orbital electron populations 1.22279 0.95876 1.02559 1.02794 1.21557 0.94106 0.82327 1.03697 1.47079 1.70022 1.14402 1.04386 1.21361 0.94621 0.98703 0.84097 1.22698 0.98118 0.82275 0.98994 1.86454 1.35688 1.25350 1.90260 1.15869 0.78720 0.84345 0.80296 1.90922 1.52176 1.16093 1.85937 1.42761 1.65645 1.20747 1.03734 1.17225 0.93437 0.95433 0.83435 1.20616 0.98672 1.04161 0.98371 1.20518 0.98140 0.97985 0.91661 1.20220 0.97906 1.04732 0.99428 1.18788 0.90239 0.92559 0.86128 1.83612 1.33527 1.65453 1.29598 1.20724 0.96632 1.32042 0.97015 0.87842 1.24455 0.94886 0.95286 0.99345 1.69649 1.14196 1.36123 1.32003 0.86180 0.80331 0.78456 0.81941 1.19877 1.20894 1.18295 1.20896 1.03722 1.09517 0.92669 0.92154 0.92246 0.91220 0.88969 0.91025 0.89939 0.88300 0.92851 0.92987 0.77645 0.75953 0.86139 0.86518 0.86437 0.91114 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 10.24 37.16 0.38 -1.27 16 2 C 0.11 1.05 5.67 -4.04 -0.02 1.03 16 3 N -0.62 -7.57 2.44 -179.42 -0.44 -8.01 16 4 C 0.14 1.37 5.81 -4.04 -0.02 1.35 16 5 C 0.06 0.51 7.39 37.16 0.27 0.79 16 6 O -0.57 -4.80 12.48 -35.23 -0.44 -5.24 16 7 C 0.71 11.37 8.01 -86.92 -0.70 10.67 16 8 O -0.57 -11.01 13.63 5.29 0.07 -10.94 16 9 N -0.68 -11.16 5.17 -14.24 -0.07 -11.24 16 10 C 0.20 3.90 6.27 -83.71 -0.52 3.38 16 11 C -0.20 -3.79 8.65 -39.34 -0.34 -4.13 16 12 C -0.06 -1.18 10.03 -39.63 -0.40 -1.57 16 13 C -0.20 -4.15 9.99 -39.36 -0.39 -4.54 16 14 C 0.18 4.12 6.64 -39.13 -0.26 3.86 16 15 O -0.22 -5.74 8.58 0.03 0.00 -5.74 16 16 C -0.39 -10.93 9.90 30.88 0.31 -10.63 16 17 H 0.10 2.97 5.53 -52.49 -0.29 2.68 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.35 13.96 55.48 0.77 -24.58 16 20 Si 0.91 21.70 28.62 -169.99 -4.86 16.83 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.25 -5.41 9.04 -39.21 -0.35 -5.76 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.09 0.83 7.11 -51.93 -0.37 0.47 16 29 H 0.07 0.69 6.45 -51.93 -0.33 0.36 16 30 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.10 1.08 7.42 -51.93 -0.39 0.70 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.38 1.68 9.12 45.56 0.42 2.09 16 35 H 0.40 5.65 6.63 -40.82 -0.27 5.38 16 36 H 0.12 2.29 6.44 -52.49 -0.34 1.95 16 37 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.14 3.04 5.71 -52.49 -0.30 2.74 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -33.20 336.96 -6.43 -39.62 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.39 Total: 9.38 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.15 Total: -5.17 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.26 Total: -43.83 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.37 Total: -21.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.20 -6.43 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298604842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.673 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds