Wall clock time and date at job start Tue Mar 31 2020 08:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46881 * 2 1 4 4 C 1.46504 * 119.99859 * 270.00201 * 3 2 1 5 5 C 1.53001 * 109.46969 * 269.99863 * 4 3 2 6 6 O 1.42899 * 109.47142 * 64.99789 * 5 4 3 7 7 C 1.34775 * 120.00246 * 90.00017 * 3 2 1 8 8 O 1.21589 * 120.00079 * 180.02562 * 7 3 2 9 9 N 1.34776 * 120.00009 * 359.97438 * 7 3 2 10 10 C 1.39945 * 120.00335 * 174.69170 * 9 7 3 11 11 C 1.38957 * 120.03274 * 326.35028 * 10 9 7 12 12 C 1.38162 * 120.06560 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.13691 * 359.72203 * 12 11 10 14 14 C 1.38902 * 120.06833 * 0.55244 * 13 12 11 15 15 O 1.35755 * 120.03346 * 179.72219 * 14 13 12 16 16 C 1.34833 * 117.00051 * 173.81944 * 15 14 13 17 17 H 1.07999 * 120.00115 * 354.59913 * 16 15 14 18 18 C 1.38642 * 120.00186 * 174.59376 * 16 15 14 19 19 N 1.31559 * 120.00315 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99870 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47169 * 89.99871 * 20 18 16 22 22 H 1.48497 * 109.47209 * 209.99762 * 20 18 16 23 23 H 1.48504 * 109.46894 * 329.99923 * 20 18 16 24 24 C 1.38705 * 120.03300 * 146.36828 * 10 9 7 25 25 H 1.08996 * 109.46918 * 299.99847 * 1 2 3 26 26 H 1.08995 * 109.47180 * 60.00272 * 1 2 3 27 27 H 1.09008 * 109.46691 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47290 * 240.00055 * 2 1 3 29 29 H 1.08995 * 109.47180 * 119.99728 * 2 1 3 30 30 H 1.08990 * 109.47135 * 29.99535 * 4 3 2 31 31 H 1.09004 * 109.47227 * 150.00330 * 4 3 2 32 32 H 1.08996 * 109.47327 * 185.00020 * 5 4 3 33 33 H 1.09007 * 109.46904 * 304.99749 * 5 4 3 34 34 H 0.96702 * 114.00022 * 179.97438 * 6 5 4 35 35 H 0.97005 * 119.99995 * 354.69610 * 9 7 3 36 36 H 1.07999 * 119.96592 * 359.97438 * 11 10 9 37 37 H 1.07994 * 119.92778 * 179.97438 * 12 11 10 38 38 H 1.07993 * 119.96306 * 180.27536 * 13 12 11 39 39 H 0.97007 * 119.99795 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.07067 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8315 -1.7105 6 8 3.8943 0.4434 -1.9935 7 6 2.2429 2.0166 1.1672 8 8 2.6477 3.1632 1.1671 9 7 2.0178 1.3815 2.3344 10 6 2.3552 1.9996 3.5438 11 6 3.4633 2.8352 3.6123 12 6 3.7974 3.4453 4.8061 13 6 3.0280 3.2313 5.9337 14 6 1.9224 2.3926 5.8729 15 8 1.1702 2.1784 6.9826 16 6 0.0408 1.4585 6.8269 17 1 -0.2748 1.1558 5.8395 18 6 -0.7153 1.1069 7.9346 19 7 -1.8170 0.4040 7.7828 20 14 -0.1696 1.6310 9.6426 21 1 -0.7623 2.9532 9.9675 22 1 -0.6244 0.6268 10.6374 23 1 1.3116 1.7297 9.6804 24 6 1.5841 1.7783 4.6753 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0283 31 1 2.0954 3.1411 -1.1385 32 1 3.9155 2.4163 -2.6064 33 1 4.3862 2.1344 -0.9131 34 1 4.7898 0.2176 -2.2804 35 1 1.6220 0.4959 2.3362 36 1 4.0645 3.0073 2.7318 37 1 4.6593 4.0940 4.8570 38 1 3.2890 3.7131 6.8642 39 1 -2.3458 0.1577 8.5579 40 1 0.7223 1.1293 4.6245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298604842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:07 Heat of formation + Delta-G solvation = -91.055669 kcal Electronic energy + Delta-G solvation = -23603.785874 eV Core-core repulsion = 19998.110959 eV Total energy + Delta-G solvation = -3605.674915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92045 -40.67517 -38.72248 -37.79899 -36.68460 -35.65077 -34.39007 -32.21544 -31.15518 -30.60963 -29.19530 -27.18709 -24.73183 -24.31793 -23.41383 -22.81762 -20.89410 -19.93433 -19.48527 -18.99238 -18.21340 -17.67571 -17.07780 -16.67295 -16.62052 -15.97828 -15.78799 -15.58126 -15.50833 -15.08610 -14.76902 -14.67496 -14.54945 -14.19236 -14.03318 -13.68329 -13.32392 -13.08045 -12.90071 -12.78346 -12.74011 -12.41504 -12.38492 -12.11492 -12.00910 -11.54686 -11.32987 -11.17090 -10.90537 -10.81387 -9.81937 -9.36645 -8.88609 -8.49043 -6.22000 0.42235 0.65901 1.33787 1.38145 1.48107 1.54318 1.98724 2.29782 2.74992 2.78819 3.10298 3.12685 3.40537 3.93791 4.08138 4.12279 4.19823 4.31257 4.32804 4.37647 4.42961 4.52085 4.61025 4.65987 4.74110 4.82468 4.87633 4.91472 4.94234 5.26428 5.28534 5.36293 5.49190 5.56519 5.63447 5.75136 5.85367 5.93278 6.22937 6.74103 6.85307 6.88179 7.37067 7.58290 8.62319 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.003697 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.261431 B = 7571.615601 C = 8532.608283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.612 5.612 4 C 0.127 3.873 5 C 0.066 3.934 6 O -0.583 6.583 7 C 0.701 3.299 8 O -0.608 6.608 9 N -0.678 5.678 10 C 0.200 3.800 11 C -0.191 4.191 12 C -0.050 4.050 13 C -0.203 4.203 14 C 0.143 3.857 15 O -0.239 6.239 16 C -0.399 4.399 17 H 0.080 0.920 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.970 3.030 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.258 4.258 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.395 0.605 35 H 0.413 0.587 36 H 0.129 0.871 37 H 0.161 0.839 38 H 0.136 0.864 39 H 0.285 0.715 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.933 -0.712 -18.987 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.348 5.348 4 C 0.004 3.996 5 C -0.013 4.013 6 O -0.391 6.391 7 C 0.403 3.597 8 O -0.487 6.487 9 N -0.327 5.327 10 C 0.104 3.896 11 C -0.212 4.212 12 C -0.069 4.069 13 C -0.223 4.223 14 C 0.093 3.907 15 O -0.146 6.146 16 C -0.475 4.475 17 H 0.097 0.903 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.280 4.280 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.244 0.756 35 H 0.252 0.748 36 H 0.147 0.853 37 H 0.178 0.822 38 H 0.154 0.846 39 H 0.094 0.906 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.443 0.006 -18.606 21.336 hybrid contribution -0.154 -0.515 0.487 0.726 sum 10.289 -0.509 -18.119 20.843 Atomic orbital electron populations 1.22242 0.95392 1.03490 1.01910 1.21720 0.94393 0.81033 1.04534 1.47203 1.68708 1.15101 1.03795 1.21612 0.96382 0.98154 0.83420 1.22537 0.96383 0.82978 0.99354 1.86395 1.37439 1.24916 1.90355 1.16033 0.78626 0.84088 0.80926 1.90886 1.53808 1.17524 1.86500 1.42707 1.65712 1.21115 1.03164 1.17288 0.93115 0.95307 0.83847 1.20906 0.98022 1.03201 0.99089 1.20977 0.98512 0.97204 0.90185 1.20534 0.96849 1.03810 1.01059 1.19323 0.91412 0.94030 0.85960 1.83555 1.33539 1.66580 1.30932 1.20672 0.97885 1.32526 0.96438 0.90252 1.25254 0.94899 0.95393 1.03074 1.69728 1.15416 1.37760 1.33323 0.85230 0.79601 0.78548 0.77445 1.19178 1.19292 1.18491 1.20844 1.03765 1.09845 0.93510 0.94554 0.91537 0.89444 0.87261 0.90992 0.87638 0.89392 0.90255 0.95148 0.75560 0.74838 0.85314 0.82175 0.84613 0.90585 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 10.24 71.98 0.74 -2.27 16 2 C 0.11 1.90 5.67 86.38 0.49 2.39 16 3 N -0.61 -14.15 2.44 -839.83 -2.05 -16.20 16 4 C 0.13 2.34 5.81 86.38 0.50 2.84 16 5 C 0.07 1.02 7.39 71.98 0.53 1.56 16 6 O -0.58 -8.20 12.48 -148.98 -1.86 -10.06 16 7 C 0.70 22.19 8.01 179.06 1.43 23.63 16 8 O -0.61 -22.92 13.63 -3.99 -0.05 -22.98 16 9 N -0.68 -22.23 5.17 -317.23 -1.64 -23.87 16 10 C 0.20 7.84 6.27 38.13 0.24 8.07 16 11 C -0.19 -7.03 8.65 22.42 0.19 -6.83 16 12 C -0.05 -1.71 10.03 22.24 0.22 -1.48 16 13 C -0.20 -8.00 9.99 22.41 0.22 -7.77 16 14 C 0.14 6.80 6.64 22.56 0.15 6.95 16 15 O -0.24 -12.98 8.58 -22.82 -0.20 -13.18 16 16 C -0.40 -23.43 9.90 67.92 0.67 -22.76 16 17 H 0.08 4.88 5.53 -2.91 -0.02 4.87 16 18 C 0.01 0.71 5.49 84.83 0.47 1.18 16 19 N -0.92 -54.62 13.96 21.61 0.30 -54.32 16 20 Si 0.97 45.21 28.62 68.60 1.96 47.18 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.26 -11.69 9.04 22.51 0.20 -11.48 16 25 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.11 1.68 7.11 -2.39 -0.02 1.66 16 29 H 0.07 1.30 6.45 -2.39 -0.02 1.29 16 30 H 0.11 1.47 8.07 -2.39 -0.02 1.45 16 31 H 0.09 1.84 7.42 -2.39 -0.02 1.82 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.39 2.44 9.12 -74.06 -0.68 1.76 16 35 H 0.41 11.70 6.63 -92.70 -0.61 11.09 16 36 H 0.13 4.62 6.44 -2.91 -0.02 4.60 16 37 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 40 H 0.12 5.64 5.71 -2.91 -0.02 5.63 16 Total: -1.00 -73.30 336.96 2.33 -70.97 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.20 Total: 28.44 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 6.07 Total: -5.98 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -3.38 Total: -94.39 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -2.11 Total: -46.21 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.96 Total: 47.18 kcal Total: -73.30 2.33 -70.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298604842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.085 kcal (2) G-P(sol) polarization free energy of solvation -73.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds