Wall clock time and date at job start Tue Mar 31 2020 06:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47041 * 2 1 4 4 C 1.53008 * 109.47276 * 240.00312 * 2 1 3 5 5 O 1.42895 * 109.47212 * 59.99591 * 4 2 1 6 6 N 1.46497 * 109.47568 * 120.00106 * 2 1 3 7 7 C 1.34784 * 119.99660 * 300.00570 * 6 2 1 8 8 O 1.21589 * 120.00109 * 359.97438 * 7 6 2 9 9 N 1.34778 * 119.99796 * 180.02562 * 7 6 2 10 10 C 1.39939 * 119.99758 * 174.73723 * 9 7 6 11 11 C 1.38961 * 120.03372 * 326.32125 * 10 9 7 12 12 C 1.38158 * 120.06609 * 180.02562 * 11 10 9 13 13 C 1.38175 * 120.13843 * 359.72818 * 12 11 10 14 14 C 1.38905 * 120.06692 * 0.55303 * 13 12 11 15 15 O 1.35755 * 120.03289 * 179.72231 * 14 13 12 16 16 C 1.34825 * 117.00011 * 173.82163 * 15 14 13 17 17 H 1.07996 * 119.99945 * 354.59785 * 16 15 14 18 18 C 1.38654 * 119.99933 * 174.60004 * 16 15 14 19 19 N 1.31557 * 119.99985 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00158 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47142 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47491 * 119.99648 * 20 18 16 23 23 H 1.48501 * 109.47329 * 240.00262 * 20 18 16 24 24 C 1.38708 * 120.03895 * 146.35779 * 10 9 7 25 25 H 1.08997 * 109.47038 * 299.99763 * 1 2 3 26 26 H 1.08995 * 109.47089 * 60.00236 * 1 2 3 27 27 H 1.09007 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47072 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46939 * 299.99950 * 3 2 1 30 30 H 1.08997 * 109.47011 * 60.00221 * 3 2 1 31 31 H 1.08993 * 109.46909 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46731 * 299.99844 * 4 2 1 33 33 H 0.96696 * 114.00037 * 180.02562 * 5 4 2 34 34 H 0.96996 * 120.00079 * 119.99969 * 6 2 1 35 35 H 0.97001 * 120.00264 * 354.72212 * 9 7 6 36 36 H 1.07995 * 119.96885 * 0.02562 * 11 10 9 37 37 H 1.07998 * 119.93117 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.96247 * 180.27763 * 13 12 11 39 39 H 0.97000 * 120.00123 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.06400 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 1.5637 -0.0476 -2.4161 6 7 2.0185 -0.6906 1.1961 7 6 1.6928 -0.2302 2.4203 8 8 0.9940 0.7586 2.5318 9 7 2.1425 -0.8652 3.5207 10 6 1.8975 -0.3263 4.7887 11 6 1.8599 1.0518 4.9634 12 6 1.6186 1.5845 6.2150 13 6 1.4084 0.7495 7.2957 14 6 1.4506 -0.6288 7.1287 15 8 1.2496 -1.4485 8.1920 16 6 1.1762 -2.7710 7.9401 17 1 1.1886 -3.1281 6.9209 18 6 1.0847 -3.6726 8.9895 19 7 1.0691 -3.2376 10.2310 20 14 0.9823 -5.5048 8.6405 21 1 1.0168 -5.7320 7.1734 22 1 2.1335 -6.1950 9.2759 23 1 -0.2855 -6.0442 9.1946 24 6 1.6927 -1.1671 5.8728 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6768 -1.7489 -1.2493 33 1 1.8487 -0.4513 -3.2472 34 1 2.5761 -1.4792 1.1071 35 1 2.6359 -1.6958 3.4338 36 1 2.0194 1.7070 4.1198 37 1 1.5894 2.6559 6.3482 38 1 1.2156 1.1690 8.2720 39 1 1.0054 -3.8683 10.9651 40 1 1.7217 -2.2384 5.7396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298622188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:01 Heat of formation + Delta-G solvation = -73.150712 kcal Electronic energy + Delta-G solvation = -23381.168148 eV Core-core repulsion = 19776.269650 eV Total energy + Delta-G solvation = -3604.898498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64098 -39.00569 -37.98474 -36.53583 -35.23381 -34.22188 -32.25191 -31.47597 -29.14381 -28.27088 -27.29668 -26.69293 -25.28692 -22.73809 -21.77822 -20.57227 -19.83329 -18.63354 -17.96842 -17.72393 -17.34493 -15.73964 -15.51385 -15.24238 -14.97201 -14.86983 -14.70709 -14.14744 -14.09807 -13.82963 -13.52580 -13.05992 -12.99641 -12.91557 -12.39042 -12.16104 -11.95559 -11.69123 -11.54810 -11.30923 -11.16159 -11.03803 -10.88653 -10.70169 -10.46352 -10.42565 -9.85596 -9.54307 -9.44692 -9.18873 -8.79190 -7.67878 -7.10934 -6.43924 -4.03389 2.08560 2.42034 2.56001 3.11139 3.12223 3.17768 3.33045 3.89742 3.96475 4.19604 4.58122 4.63069 4.66417 4.83070 5.11336 5.12434 5.30621 5.31720 5.61678 5.74419 5.77057 5.80294 5.87063 6.04059 6.09624 6.21512 6.27829 6.32997 6.38551 6.49566 6.58225 6.83243 7.03918 7.13323 7.17408 7.30566 7.36886 7.45644 7.85844 8.00604 8.04954 8.66619 9.01761 9.73166 10.74416 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.003402 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.268572 B = 8228.399216 C = 9297.784292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.194 3.806 3 C -0.159 4.159 4 C 0.078 3.922 5 O -0.561 6.561 6 N -0.742 5.742 7 C 0.709 3.291 8 O -0.562 6.562 9 N -0.683 5.683 10 C 0.199 3.801 11 C -0.204 4.204 12 C -0.063 4.063 13 C -0.202 4.202 14 C 0.169 3.831 15 O -0.177 6.177 16 C -0.390 4.390 17 H 0.090 0.910 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.258 4.258 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.382 0.618 34 H 0.393 0.607 35 H 0.401 0.599 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.269 0.731 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.316 2.216 -21.611 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.107 3.893 3 C -0.217 4.217 4 C -0.001 4.001 5 O -0.366 6.366 6 N -0.399 5.399 7 C 0.409 3.591 8 O -0.438 6.438 9 N -0.330 5.330 10 C 0.106 3.894 11 C -0.225 4.225 12 C -0.082 4.082 13 C -0.222 4.222 14 C 0.115 3.885 15 O -0.081 6.081 16 C -0.467 4.467 17 H 0.107 0.893 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.280 4.280 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.230 0.770 34 H 0.226 0.774 35 H 0.236 0.764 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.351 3.466 -20.655 21.210 hybrid contribution 0.817 -2.368 -0.746 2.614 sum 4.168 1.098 -21.401 21.830 Atomic orbital electron populations 1.22186 0.93559 1.02083 1.03985 1.19935 0.95025 0.92527 0.81785 1.22179 1.00373 0.95183 1.03964 1.22207 0.97428 0.94786 0.85679 1.86450 1.77398 1.57027 1.15701 1.45128 1.57154 1.33439 1.04210 1.15777 0.80183 0.83192 0.79904 1.90894 1.40899 1.26787 1.85202 1.42623 1.58803 1.27464 1.04061 1.17168 0.98051 0.92231 0.81984 1.20562 1.11398 0.92968 0.97552 1.20527 0.97549 0.98370 0.91731 1.20241 1.11767 0.90715 0.99505 1.19063 0.91734 0.90711 0.86996 1.84020 1.77821 1.17817 1.28443 1.21308 1.52363 0.78665 0.94351 0.89254 1.25270 0.96724 1.00111 0.94431 1.70046 1.46251 1.35188 0.98325 0.85667 0.78266 0.80893 0.78671 1.19259 1.20183 1.20159 1.20778 1.14820 0.99825 0.92579 0.89914 0.91249 0.93163 0.93190 0.91254 0.89950 0.93101 0.93091 0.77046 0.77369 0.76418 0.86191 0.86676 0.86442 0.92102 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.26 37.16 0.31 -1.60 16 2 C 0.19 2.01 0.89 -131.81 -0.12 1.90 16 3 C -0.16 -1.82 8.26 37.16 0.31 -1.51 16 4 C 0.08 0.56 6.03 37.16 0.22 0.78 16 5 O -0.56 -4.05 12.31 -35.23 -0.43 -4.49 16 6 N -0.74 -7.87 5.11 -52.41 -0.27 -8.14 16 7 C 0.71 10.55 7.72 -86.91 -0.67 9.88 16 8 O -0.56 -10.24 10.25 5.29 0.05 -10.19 16 9 N -0.68 -10.30 5.35 -14.24 -0.08 -10.37 16 10 C 0.20 3.83 6.27 -83.71 -0.52 3.31 16 11 C -0.20 -3.95 8.65 -39.34 -0.34 -4.29 16 12 C -0.06 -1.20 10.03 -39.63 -0.40 -1.60 16 13 C -0.20 -4.39 9.99 -39.36 -0.39 -4.78 16 14 C 0.17 4.12 6.64 -39.14 -0.26 3.86 16 15 O -0.18 -5.06 9.76 0.05 0.00 -5.06 16 16 C -0.39 -10.85 9.44 30.89 0.29 -10.56 16 17 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.27 13.67 55.48 0.76 -24.52 16 20 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.26 -5.61 9.04 -39.21 -0.35 -5.96 16 25 H 0.08 1.23 6.16 -51.93 -0.32 0.91 16 26 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.75 7.68 -51.93 -0.40 0.36 16 30 H 0.08 1.17 6.16 -51.93 -0.32 0.85 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.38 0.96 9.12 45.56 0.42 1.38 16 34 H 0.39 2.91 8.49 -40.82 -0.35 2.57 16 35 H 0.40 4.72 8.83 -40.82 -0.36 4.36 16 36 H 0.12 2.28 6.43 -52.49 -0.34 1.95 16 37 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 40 H 0.13 2.74 5.71 -52.49 -0.30 2.44 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -34.27 332.60 -6.32 -40.59 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.32 Total: 11.45 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -2.03 Total: -9.60 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.41 Total: -43.03 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.38 Total: -19.74 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.27 -6.32 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298622188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.558 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds