Wall clock time and date at job start Tue Mar 31 2020 06:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47041 * 2 1 4 4 C 1.53008 * 109.47276 * 240.00312 * 2 1 3 5 5 O 1.42895 * 109.47212 * 59.99591 * 4 2 1 6 6 N 1.46497 * 109.47568 * 120.00106 * 2 1 3 7 7 C 1.34784 * 119.99660 * 300.00570 * 6 2 1 8 8 O 1.21589 * 120.00109 * 359.97438 * 7 6 2 9 9 N 1.34778 * 119.99796 * 180.02562 * 7 6 2 10 10 C 1.39939 * 119.99758 * 174.73723 * 9 7 6 11 11 C 1.38961 * 120.03372 * 326.32125 * 10 9 7 12 12 C 1.38158 * 120.06609 * 180.02562 * 11 10 9 13 13 C 1.38175 * 120.13843 * 359.72818 * 12 11 10 14 14 C 1.38905 * 120.06692 * 0.55303 * 13 12 11 15 15 O 1.35755 * 120.03289 * 179.72231 * 14 13 12 16 16 C 1.34825 * 117.00011 * 173.82163 * 15 14 13 17 17 H 1.07996 * 119.99945 * 354.59785 * 16 15 14 18 18 C 1.38654 * 119.99933 * 174.60004 * 16 15 14 19 19 N 1.31557 * 119.99985 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00158 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47142 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47491 * 119.99648 * 20 18 16 23 23 H 1.48501 * 109.47329 * 240.00262 * 20 18 16 24 24 C 1.38708 * 120.03895 * 146.35779 * 10 9 7 25 25 H 1.08997 * 109.47038 * 299.99763 * 1 2 3 26 26 H 1.08995 * 109.47089 * 60.00236 * 1 2 3 27 27 H 1.09007 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47072 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46939 * 299.99950 * 3 2 1 30 30 H 1.08997 * 109.47011 * 60.00221 * 3 2 1 31 31 H 1.08993 * 109.46909 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46731 * 299.99844 * 4 2 1 33 33 H 0.96696 * 114.00037 * 180.02562 * 5 4 2 34 34 H 0.96996 * 120.00079 * 119.99969 * 6 2 1 35 35 H 0.97001 * 120.00264 * 354.72212 * 9 7 6 36 36 H 1.07995 * 119.96885 * 0.02562 * 11 10 9 37 37 H 1.07998 * 119.93117 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.96247 * 180.27763 * 13 12 11 39 39 H 0.97000 * 120.00123 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.06400 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 1.5637 -0.0476 -2.4161 6 7 2.0185 -0.6906 1.1961 7 6 1.6928 -0.2302 2.4203 8 8 0.9940 0.7586 2.5318 9 7 2.1425 -0.8652 3.5207 10 6 1.8975 -0.3263 4.7887 11 6 1.8599 1.0518 4.9634 12 6 1.6186 1.5845 6.2150 13 6 1.4084 0.7495 7.2957 14 6 1.4506 -0.6288 7.1287 15 8 1.2496 -1.4485 8.1920 16 6 1.1762 -2.7710 7.9401 17 1 1.1886 -3.1281 6.9209 18 6 1.0847 -3.6726 8.9895 19 7 1.0691 -3.2376 10.2310 20 14 0.9823 -5.5048 8.6405 21 1 1.0168 -5.7320 7.1734 22 1 2.1335 -6.1950 9.2759 23 1 -0.2855 -6.0442 9.1946 24 6 1.6927 -1.1671 5.8728 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6768 -1.7489 -1.2493 33 1 1.8487 -0.4513 -3.2472 34 1 2.5761 -1.4792 1.1071 35 1 2.6359 -1.6958 3.4338 36 1 2.0194 1.7070 4.1198 37 1 1.5894 2.6559 6.3482 38 1 1.2156 1.1690 8.2720 39 1 1.0054 -3.8683 10.9651 40 1 1.7217 -2.2384 5.7396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298622188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:00 Heat of formation + Delta-G solvation = -100.533459 kcal Electronic energy + Delta-G solvation = -23382.355553 eV Core-core repulsion = 19776.269650 eV Total energy + Delta-G solvation = -3606.085903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86116 -40.60871 -39.05955 -37.95438 -36.16967 -35.61363 -34.22921 -32.57282 -30.79280 -29.85688 -28.22288 -27.40843 -27.23055 -24.07362 -23.47263 -21.96582 -20.84261 -20.09451 -19.30629 -19.05775 -18.45609 -17.19935 -16.87957 -16.50465 -16.10609 -16.04133 -15.91224 -15.64527 -15.59060 -15.42491 -14.84045 -14.53670 -14.22358 -13.87948 -13.70753 -13.55775 -13.32144 -13.07197 -12.84414 -12.69802 -12.66392 -12.36989 -12.23293 -12.07680 -11.80338 -11.43576 -11.19378 -10.94753 -10.90180 -10.69301 -10.19278 -9.30798 -8.81649 -8.45239 -6.13782 0.47398 0.73289 1.36616 1.44215 1.47275 1.54888 2.08022 2.18871 2.86624 3.01493 3.20029 3.46820 3.51880 3.89128 4.02931 4.08435 4.14683 4.35817 4.47086 4.51408 4.63833 4.65324 4.70496 4.77986 4.84296 4.93538 4.95547 5.05009 5.12869 5.28446 5.37066 5.40147 5.54277 5.55287 5.70219 5.72158 5.98802 6.03685 6.23481 6.90986 6.99064 7.00845 7.49780 7.79817 8.78237 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.003402 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.268572 B = 8228.399216 C = 9297.784292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.188 3.812 3 C -0.154 4.154 4 C 0.086 3.914 5 O -0.579 6.579 6 N -0.720 5.720 7 C 0.706 3.294 8 O -0.596 6.596 9 N -0.675 5.675 10 C 0.209 3.791 11 C -0.198 4.198 12 C -0.051 4.051 13 C -0.217 4.217 14 C 0.135 3.865 15 O -0.227 6.227 16 C -0.411 4.411 17 H 0.102 0.898 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.249 1.249 22 H -0.268 1.268 23 H -0.272 1.272 24 C -0.261 4.261 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.404 0.596 34 H 0.413 0.587 35 H 0.419 0.581 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.293 1.259 -24.972 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.102 3.898 3 C -0.212 4.212 4 C 0.007 3.993 5 O -0.388 6.388 6 N -0.378 5.378 7 C 0.407 3.593 8 O -0.474 6.474 9 N -0.323 5.323 10 C 0.113 3.887 11 C -0.219 4.219 12 C -0.070 4.070 13 C -0.237 4.237 14 C 0.084 3.916 15 O -0.134 6.134 16 C -0.487 4.487 17 H 0.119 0.881 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.172 1.172 22 H -0.193 1.193 23 H -0.197 1.197 24 C -0.283 4.283 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.255 0.745 34 H 0.250 0.750 35 H 0.256 0.744 36 H 0.148 0.852 37 H 0.170 0.830 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.371 2.497 -24.123 24.642 hybrid contribution 0.525 -1.816 0.052 1.891 sum 4.896 0.681 -24.071 24.573 Atomic orbital electron populations 1.22111 0.94885 1.01930 1.02473 1.20072 0.94096 0.92603 0.83076 1.22098 1.00878 0.95681 1.02556 1.22089 0.98431 0.94720 0.84029 1.86395 1.77845 1.57788 1.16762 1.44911 1.56381 1.33678 1.02792 1.15931 0.79867 0.82798 0.80749 1.90890 1.42350 1.28354 1.85815 1.42471 1.58879 1.28185 1.02760 1.17156 0.96416 0.92085 0.83038 1.20855 1.09907 0.93254 0.97866 1.20902 0.95468 0.99962 0.90664 1.20464 1.12412 0.90180 1.00606 1.19576 0.93122 0.91489 0.87404 1.83985 1.80319 1.18499 1.30552 1.21828 1.52642 0.78975 0.95277 0.88052 1.26589 0.95950 1.05570 0.93937 1.70193 1.48781 1.37271 0.99654 0.84525 0.78440 0.73661 0.79543 1.17230 1.19272 1.19692 1.20792 1.14916 1.00158 0.92433 0.93300 0.90829 0.92589 0.92185 0.90928 0.93045 0.91082 0.91394 0.74550 0.75032 0.74358 0.85210 0.83022 0.86387 0.91857 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.26 71.98 0.59 -2.89 16 2 C 0.19 3.42 0.89 3.61 0.00 3.42 16 3 C -0.15 -3.24 8.26 71.98 0.59 -2.65 16 4 C 0.09 0.89 6.03 71.98 0.43 1.32 16 5 O -0.58 -6.38 12.31 -148.98 -1.83 -8.21 16 6 N -0.72 -13.20 5.11 -437.98 -2.24 -15.44 16 7 C 0.71 19.62 7.72 179.05 1.38 21.00 16 8 O -0.60 -21.12 10.25 -4.00 -0.04 -21.16 16 9 N -0.67 -18.95 5.35 -317.22 -1.70 -20.65 16 10 C 0.21 7.77 6.27 38.13 0.24 8.01 16 11 C -0.20 -7.35 8.65 22.42 0.19 -7.16 16 12 C -0.05 -1.90 10.03 22.24 0.22 -1.67 16 13 C -0.22 -9.53 9.99 22.41 0.22 -9.31 16 14 C 0.14 6.79 6.64 22.56 0.15 6.94 16 15 O -0.23 -13.61 9.76 -22.74 -0.22 -13.83 16 16 C -0.41 -23.59 9.44 67.92 0.64 -22.95 16 17 H 0.10 5.30 5.30 -2.91 -0.02 5.28 16 18 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 19 N -0.92 -56.19 13.67 21.61 0.30 -55.89 16 20 Si 1.02 42.00 29.55 68.60 2.03 44.02 16 21 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 24 C -0.26 -11.37 9.04 22.51 0.20 -11.17 16 25 H 0.05 1.44 6.16 -2.39 -0.01 1.42 16 26 H 0.07 1.55 7.68 -2.39 -0.02 1.54 16 27 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.46 7.68 -2.38 -0.02 1.44 16 30 H 0.05 1.42 6.16 -2.39 -0.01 1.40 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.40 0.54 9.12 -74.06 -0.68 -0.13 16 34 H 0.41 4.49 8.49 -92.71 -0.79 3.70 16 35 H 0.42 8.74 8.83 -92.71 -0.82 7.92 16 36 H 0.13 4.67 6.43 -2.91 -0.02 4.65 16 37 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.13 5.49 5.71 -2.91 -0.02 5.48 16 Total: -1.00 -78.43 332.60 0.47 -77.96 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -1.17 Total: 31.11 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 5.35 Total: -17.92 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -3.64 Total: -91.97 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -2.10 Total: -43.21 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -78.43 0.47 -77.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298622188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.572 kcal (2) G-P(sol) polarization free energy of solvation -78.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds