Wall clock time and date at job start Tue Mar 31 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47127 * 2 1 4 4 C 1.35897 * 117.00309 * 179.97438 * 3 2 1 5 5 C 1.38613 * 120.01546 * 0.02562 * 4 3 2 6 6 C 1.38793 * 119.87285 * 180.02562 * 5 4 3 7 7 N 1.39664 * 120.04807 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00392 * 186.99947 * 7 6 5 9 9 H 1.09005 * 109.47290 * 335.02725 * 8 7 6 10 10 C 1.50696 * 109.47701 * 215.03063 * 8 7 6 11 11 H 1.08003 * 119.99547 * 355.12130 * 10 8 7 12 12 C 1.37875 * 120.00753 * 175.12392 * 10 8 7 13 13 N 1.31523 * 119.99305 * 348.22235 * 12 10 8 14 14 Si 1.86795 * 120.00529 * 168.21542 * 12 10 8 15 15 H 1.48496 * 109.46896 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47076 * 120.00437 * 14 12 10 17 17 H 1.48500 * 109.47466 * 240.00149 * 14 12 10 18 18 C 1.53000 * 109.47262 * 95.02905 * 8 7 6 19 19 C 1.53007 * 109.46640 * 296.19397 * 18 8 7 20 20 C 1.38969 * 119.90834 * 0.24937 * 6 5 4 21 21 C 1.38119 * 120.03102 * 359.51578 * 20 6 5 22 22 C 1.38212 * 120.13306 * 0.46456 * 21 20 6 23 23 N 1.48004 * 119.95939 * 179.76652 * 22 21 20 24 24 O 1.21799 * 119.99492 * 0.02562 * 23 22 21 25 25 O 1.21801 * 120.00159 * 180.02562 * 23 22 21 26 26 H 1.09000 * 109.47197 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47549 * 300.00278 * 1 2 3 28 28 H 1.09000 * 109.46676 * 60.00270 * 1 2 3 29 29 H 1.08997 * 109.47549 * 239.99722 * 2 1 3 30 30 H 1.09000 * 109.46676 * 119.99730 * 2 1 3 31 31 H 1.08004 * 120.06487 * 0.04635 * 5 4 3 32 32 H 0.97007 * 120.00021 * 7.00398 * 7 6 5 33 33 H 0.96990 * 120.00247 * 1.02477 * 13 12 10 34 34 H 1.08996 * 109.47224 * 56.18909 * 18 8 7 35 35 H 1.09000 * 109.47207 * 176.19520 * 18 8 7 36 36 H 1.09004 * 109.46750 * 185.22626 * 19 18 8 37 37 H 1.08999 * 109.47160 * 305.21875 * 19 18 8 38 38 H 1.08994 * 109.47390 * 65.22574 * 19 18 8 39 39 H 1.07998 * 119.98290 * 179.72879 * 20 6 5 40 40 H 1.08001 * 119.93313 * 180.23077 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1983 0.4264 0.0005 6 6 5.5738 0.6117 0.0016 7 7 6.4283 -0.4930 0.0021 8 6 7.8724 -0.3020 0.1579 9 1 8.1449 0.6988 -0.1773 10 6 8.6067 -1.3258 -0.6690 11 1 8.0559 -2.0954 -1.1893 12 6 9.9816 -1.2801 -0.7612 13 7 10.6349 -0.2241 -0.3280 14 14 10.9164 -2.7181 -1.5013 15 1 9.9565 -3.7747 -1.9101 16 1 11.6776 -2.2548 -2.6893 17 1 11.8585 -3.2675 -0.4934 18 6 8.2529 -0.4679 1.6305 19 6 7.5819 0.6308 2.4574 20 6 6.0997 1.8981 0.0080 21 6 5.2544 2.9904 0.0031 22 6 3.8844 2.8076 0.0016 23 7 2.9822 3.9809 0.0015 24 8 3.4473 5.1066 0.0024 25 8 1.7748 3.8206 0.0007 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7870 -0.5723 -0.0007 32 1 6.0656 -1.3868 -0.1007 33 1 10.1508 0.5162 0.0699 34 1 7.9198 -1.4435 1.9842 35 1 9.3352 -0.3929 1.7368 36 1 7.9256 0.5695 3.4900 37 1 7.8419 1.6058 2.0453 38 1 6.5003 0.4997 2.4261 39 1 7.1698 2.0437 0.0133 40 1 5.6648 3.9894 0.0043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302162941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:17 Heat of formation + Delta-G solvation = -32.668333 kcal Electronic energy + Delta-G solvation = -23934.607542 eV Core-core repulsion = 20331.464492 eV Total energy + Delta-G solvation = -3603.143050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66476 -40.18491 -38.50188 -36.29177 -35.91224 -33.49626 -31.96290 -31.71441 -30.05985 -29.64798 -26.86521 -24.92295 -24.27337 -23.44018 -22.17490 -21.64566 -20.20886 -19.14297 -18.32169 -17.67771 -17.63541 -17.06738 -16.25254 -16.20593 -15.83510 -14.55183 -14.44309 -14.10201 -13.97491 -13.57030 -13.38309 -13.27354 -12.80031 -12.71718 -12.44038 -12.20043 -11.96038 -11.65130 -11.39957 -11.12706 -11.03039 -10.97382 -10.86256 -10.75549 -10.63104 -10.57810 -10.36487 -10.24817 -9.95266 -9.04756 -8.60302 -8.57808 -7.40268 -6.74227 -4.49161 0.49733 1.31347 1.91595 2.01109 2.89137 3.25203 3.26472 3.39818 3.64001 3.70829 4.25740 4.57432 4.72547 4.76641 4.95527 4.98669 5.03006 5.10266 5.22385 5.41255 5.49801 5.60621 5.70100 5.75664 5.76512 5.87773 5.93443 6.06488 6.19612 6.34133 6.42205 6.48090 6.61402 6.76197 6.82318 7.06970 7.15444 7.42564 7.56319 8.04896 8.12378 8.24176 8.44346 9.20756 10.63331 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004000 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.398867 B = 6999.150442 C = 7743.660247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.285 6.285 4 C 0.245 3.755 5 C -0.316 4.316 6 C 0.317 3.683 7 N -0.685 5.685 8 C 0.251 3.749 9 H 0.045 0.955 10 C -0.623 4.623 11 H 0.058 0.942 12 C 0.033 3.967 13 N -0.895 5.895 14 Si 1.074 2.926 15 H -0.288 1.288 16 H -0.285 1.285 17 H -0.283 1.283 18 C -0.134 4.134 19 C -0.152 4.152 20 C -0.226 4.226 21 C 0.020 3.980 22 C -0.158 4.158 23 N 0.058 4.942 24 O -0.212 6.212 25 O -0.172 6.172 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.399 0.601 33 H 0.273 0.727 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.149 0.851 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 -1.496 2.079 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.196 6.196 4 C 0.194 3.806 5 C -0.341 4.341 6 C 0.199 3.801 7 N -0.301 5.301 8 C 0.148 3.852 9 H 0.063 0.937 10 C -0.661 4.661 11 H 0.076 0.924 12 C -0.174 4.174 13 N -0.529 5.529 14 Si 0.902 3.098 15 H -0.214 1.214 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.173 4.173 19 C -0.209 4.209 20 C -0.249 4.249 21 C 0.000 4.000 22 C -0.248 4.248 23 N 0.566 4.434 24 O -0.415 6.415 25 O -0.386 6.386 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.234 0.766 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.166 0.834 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.254 -2.407 1.719 10.672 hybrid contribution -1.748 0.152 0.377 1.795 sum -12.002 -2.254 2.096 12.391 Atomic orbital electron populations 1.21755 0.92278 1.02675 1.03988 1.22938 0.96331 0.81575 1.01800 1.86373 1.17328 1.29572 1.86288 1.18150 0.83218 0.90966 0.88265 1.20457 0.92017 0.97924 1.23726 1.18015 0.89107 0.88943 0.84047 1.45773 1.07950 1.05567 1.70829 1.19169 0.74539 0.98889 0.92588 0.93734 1.22011 0.94268 1.15622 1.34203 0.92363 1.25797 0.94794 1.01025 0.95800 1.70789 1.39980 1.05422 1.36717 0.83459 0.75413 0.74380 0.76593 1.21433 1.21125 1.20951 1.22073 1.01488 0.97141 0.96601 1.21909 0.99999 0.99667 0.99331 1.20791 1.01049 0.89680 1.13339 1.20514 0.88854 1.00760 0.89898 1.20007 0.90163 0.82469 1.32133 1.43231 1.01408 1.01965 0.96765 1.94466 1.80417 1.10005 1.56608 1.94510 0.97252 1.92707 1.54148 0.90402 0.91260 0.91247 0.91595 0.91634 0.84174 0.76638 0.91594 0.93131 0.90524 0.93994 0.93171 0.93832 0.83378 0.83156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.28 -4.16 8.14 -41.58 -0.34 -4.49 16 4 C 0.24 3.80 6.67 -39.24 -0.26 3.54 16 5 C -0.32 -4.52 8.88 -39.24 -0.35 -4.87 16 6 C 0.32 5.05 5.38 -83.81 -0.45 4.60 16 7 N -0.69 -11.70 4.92 -53.31 -0.26 -11.96 16 8 C 0.25 5.13 1.80 -69.09 -0.12 5.01 16 9 H 0.05 0.99 5.00 -51.93 -0.26 0.73 16 10 C -0.62 -14.80 8.68 -34.44 -0.30 -15.10 16 11 H 0.06 1.39 7.84 -52.48 -0.41 0.98 16 12 C 0.03 0.81 5.13 -17.82 -0.09 0.72 16 13 N -0.90 -23.55 12.98 55.43 0.72 -22.83 16 14 Si 1.07 22.44 29.92 -169.99 -5.09 17.36 16 15 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.29 -5.97 7.11 56.52 0.40 -5.56 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 C -0.13 -2.60 5.34 -26.73 -0.14 -2.75 16 19 C -0.15 -2.53 8.61 37.16 0.32 -2.21 16 20 C -0.23 -3.62 7.91 -39.35 -0.31 -3.93 16 21 C 0.02 0.32 9.54 -39.63 -0.38 -0.06 16 22 C -0.16 -2.67 6.87 -79.77 -0.55 -3.22 16 23 N 0.06 1.07 4.45 34.05 0.15 1.22 16 24 O -0.21 -3.96 18.44 -29.46 -0.54 -4.50 16 25 O -0.17 -3.26 17.23 -36.50 -0.63 -3.89 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.07 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.14 1.65 6.30 -52.48 -0.33 1.32 16 32 H 0.40 6.26 8.71 -40.82 -0.36 5.90 16 33 H 0.27 7.04 6.26 -40.82 -0.26 6.78 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.67 6.52 -51.93 -0.34 1.33 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.82 7.11 -51.93 -0.37 0.45 16 38 H 0.04 0.70 6.91 -51.93 -0.36 0.35 16 39 H 0.15 2.45 5.30 -52.49 -0.28 2.17 16 40 H 0.15 2.09 7.60 -52.49 -0.40 1.69 16 LS Contribution 331.55 15.07 5.00 5.00 Total: -1.00 -27.56 331.55 -8.10 -35.66 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.06 Total: 6.88 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -2.05 Total: -18.43 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.61 Total: -33.58 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.51 Total: -12.89 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.09 Total: 17.36 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.56 -8.10 -35.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302162941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.992 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds