Wall clock time and date at job start Tue Mar 31 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47127 * 2 1 4 4 C 1.35897 * 117.00309 * 179.97438 * 3 2 1 5 5 C 1.38613 * 120.01546 * 0.02562 * 4 3 2 6 6 C 1.38793 * 119.87285 * 180.02562 * 5 4 3 7 7 N 1.39664 * 120.04807 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00392 * 186.99947 * 7 6 5 9 9 H 1.09005 * 109.47290 * 335.02725 * 8 7 6 10 10 C 1.50696 * 109.47701 * 215.03063 * 8 7 6 11 11 H 1.08003 * 119.99547 * 355.12130 * 10 8 7 12 12 C 1.37875 * 120.00753 * 175.12392 * 10 8 7 13 13 N 1.31523 * 119.99305 * 348.22235 * 12 10 8 14 14 Si 1.86795 * 120.00529 * 168.21542 * 12 10 8 15 15 H 1.48496 * 109.46896 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47076 * 120.00437 * 14 12 10 17 17 H 1.48500 * 109.47466 * 240.00149 * 14 12 10 18 18 C 1.53000 * 109.47262 * 95.02905 * 8 7 6 19 19 C 1.53007 * 109.46640 * 296.19397 * 18 8 7 20 20 C 1.38969 * 119.90834 * 0.24937 * 6 5 4 21 21 C 1.38119 * 120.03102 * 359.51578 * 20 6 5 22 22 C 1.38212 * 120.13306 * 0.46456 * 21 20 6 23 23 N 1.48004 * 119.95939 * 179.76652 * 22 21 20 24 24 O 1.21799 * 119.99492 * 0.02562 * 23 22 21 25 25 O 1.21801 * 120.00159 * 180.02562 * 23 22 21 26 26 H 1.09000 * 109.47197 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47549 * 300.00278 * 1 2 3 28 28 H 1.09000 * 109.46676 * 60.00270 * 1 2 3 29 29 H 1.08997 * 109.47549 * 239.99722 * 2 1 3 30 30 H 1.09000 * 109.46676 * 119.99730 * 2 1 3 31 31 H 1.08004 * 120.06487 * 0.04635 * 5 4 3 32 32 H 0.97007 * 120.00021 * 7.00398 * 7 6 5 33 33 H 0.96990 * 120.00247 * 1.02477 * 13 12 10 34 34 H 1.08996 * 109.47224 * 56.18909 * 18 8 7 35 35 H 1.09000 * 109.47207 * 176.19520 * 18 8 7 36 36 H 1.09004 * 109.46750 * 185.22626 * 19 18 8 37 37 H 1.08999 * 109.47160 * 305.21875 * 19 18 8 38 38 H 1.08994 * 109.47390 * 65.22574 * 19 18 8 39 39 H 1.07998 * 119.98290 * 179.72879 * 20 6 5 40 40 H 1.08001 * 119.93313 * 180.23077 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1983 0.4264 0.0005 6 6 5.5738 0.6117 0.0016 7 7 6.4283 -0.4930 0.0021 8 6 7.8724 -0.3020 0.1579 9 1 8.1449 0.6988 -0.1773 10 6 8.6067 -1.3258 -0.6690 11 1 8.0559 -2.0954 -1.1893 12 6 9.9816 -1.2801 -0.7612 13 7 10.6349 -0.2241 -0.3280 14 14 10.9164 -2.7181 -1.5013 15 1 9.9565 -3.7747 -1.9101 16 1 11.6776 -2.2548 -2.6893 17 1 11.8585 -3.2675 -0.4934 18 6 8.2529 -0.4679 1.6305 19 6 7.5819 0.6308 2.4574 20 6 6.0997 1.8981 0.0080 21 6 5.2544 2.9904 0.0031 22 6 3.8844 2.8076 0.0016 23 7 2.9822 3.9809 0.0015 24 8 3.4473 5.1066 0.0024 25 8 1.7748 3.8206 0.0007 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7870 -0.5723 -0.0007 32 1 6.0656 -1.3868 -0.1007 33 1 10.1508 0.5162 0.0699 34 1 7.9198 -1.4435 1.9842 35 1 9.3352 -0.3929 1.7368 36 1 7.9256 0.5695 3.4900 37 1 7.8419 1.6058 2.0453 38 1 6.5003 0.4997 2.4261 39 1 7.1698 2.0437 0.0133 40 1 5.6648 3.9894 0.0043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302162941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:16 Heat of formation + Delta-G solvation = -46.077574 kcal Electronic energy + Delta-G solvation = -23935.189010 eV Core-core repulsion = 20331.464492 eV Total energy + Delta-G solvation = -3603.724518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.03958 -41.40554 -39.73806 -37.72241 -37.33025 -35.05457 -33.30602 -32.81096 -31.36523 -30.85876 -28.46402 -26.36064 -25.29955 -25.05969 -23.37762 -22.84723 -21.67440 -20.41942 -19.76721 -19.24735 -18.97854 -18.44669 -17.54088 -17.18598 -17.15928 -15.96402 -15.69707 -15.56673 -15.44721 -14.80904 -14.63656 -14.47129 -14.16697 -13.88441 -13.55847 -13.42966 -13.24999 -12.86148 -12.60968 -12.48589 -12.47761 -12.41419 -12.30461 -12.10072 -11.98339 -11.93541 -11.90874 -11.67084 -11.36567 -10.74054 -10.42658 -9.77917 -8.79299 -8.64475 -6.41242 -0.87674 0.10990 0.56040 0.67001 1.56506 1.61491 1.77174 1.87192 2.33323 2.38732 2.56863 3.12094 3.41810 3.74329 3.85131 3.95053 4.02099 4.05439 4.25432 4.28729 4.32839 4.34195 4.46244 4.53267 4.68785 4.80511 4.88134 4.93588 4.97187 5.07919 5.11140 5.16663 5.24097 5.27002 5.49902 5.50058 5.74535 5.93162 6.06689 6.33669 6.52480 6.72442 6.79266 7.35476 8.71554 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004000 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.398867 B = 6999.150442 C = 7743.660247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.036 3.964 3 O -0.300 6.300 4 C 0.245 3.755 5 C -0.300 4.300 6 C 0.313 3.687 7 N -0.685 5.685 8 C 0.257 3.743 9 H 0.028 0.972 10 C -0.628 4.628 11 H 0.056 0.944 12 C -0.012 4.012 13 N -0.924 5.924 14 Si 1.113 2.887 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.281 1.281 18 C -0.125 4.125 19 C -0.141 4.141 20 C -0.232 4.232 21 C 0.026 3.974 22 C -0.172 4.172 23 N 0.058 4.942 24 O -0.225 6.225 25 O -0.188 6.188 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.171 0.829 32 H 0.407 0.593 33 H 0.265 0.735 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.140 0.860 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 -3.023 2.204 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 O -0.211 6.211 4 C 0.194 3.806 5 C -0.325 4.325 6 C 0.197 3.803 7 N -0.303 5.303 8 C 0.153 3.847 9 H 0.046 0.954 10 C -0.666 4.666 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.936 3.064 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.207 1.207 18 C -0.164 4.164 19 C -0.199 4.199 20 C -0.255 4.255 21 C 0.005 3.995 22 C -0.262 4.262 23 N 0.562 4.438 24 O -0.426 6.426 25 O -0.399 6.399 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.188 0.812 32 H 0.244 0.756 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.158 0.842 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.554 -3.918 1.846 12.339 hybrid contribution -1.465 0.607 0.327 1.619 sum -13.020 -3.311 2.173 13.609 Atomic orbital electron populations 1.21801 0.90939 1.04317 1.03363 1.23349 0.97472 0.79799 1.03189 1.86387 1.16560 1.32429 1.85756 1.18235 0.84082 0.90607 0.87714 1.20621 0.90894 0.98956 1.21986 1.18110 0.89674 0.88409 0.84155 1.45430 1.06632 1.06331 1.71900 1.18858 0.76216 0.96988 0.92646 0.95446 1.22359 0.94513 1.15835 1.33847 0.92596 1.26893 0.96300 1.02160 0.95979 1.70875 1.40246 1.06166 1.38685 0.82955 0.74879 0.72642 0.75927 1.19680 1.21316 1.20714 1.21895 0.99881 0.98235 0.96438 1.21795 1.00078 0.98449 0.99537 1.20755 1.00703 0.90099 1.13897 1.20597 0.88412 1.01278 0.89186 1.20270 0.90364 0.82479 1.33069 1.43451 1.01517 1.02314 0.96497 1.94449 1.80374 1.10687 1.57087 1.94494 0.97780 1.92805 1.54828 0.87582 0.91851 0.91931 0.90209 0.90078 0.81219 0.75643 0.92433 0.93028 0.93346 0.92600 0.93283 0.93068 0.84206 0.82004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.04 0.62 5.46 71.98 0.39 1.02 16 3 O -0.30 -8.16 8.14 -71.20 -0.58 -8.74 16 4 C 0.24 7.12 6.67 22.49 0.15 7.27 16 5 C -0.30 -7.74 8.88 22.49 0.20 -7.54 16 6 C 0.31 9.39 5.38 38.20 0.21 9.59 16 7 N -0.68 -22.25 4.92 -322.58 -1.59 -23.84 16 8 C 0.26 10.40 1.80 44.24 0.08 10.48 16 9 H 0.03 1.23 5.00 -2.38 -0.01 1.22 16 10 C -0.63 -29.52 8.68 25.60 0.22 -29.30 16 11 H 0.06 2.60 7.84 -2.91 -0.02 2.58 16 12 C -0.01 -0.59 5.13 84.65 0.43 -0.15 16 13 N -0.92 -49.30 12.98 21.45 0.28 -49.03 16 14 Si 1.11 44.74 29.92 68.60 2.05 46.79 16 15 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 16 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 18 C -0.13 -4.81 5.34 30.60 0.16 -4.65 16 19 C -0.14 -4.53 8.61 71.98 0.62 -3.91 16 20 C -0.23 -7.21 7.91 22.42 0.18 -7.03 16 21 C 0.03 0.78 9.54 22.24 0.21 0.99 16 22 C -0.17 -5.61 6.87 36.50 0.25 -5.36 16 23 N 0.06 2.11 4.45 -46.18 -0.21 1.90 16 24 O -0.22 -8.34 18.44 18.89 0.35 -7.99 16 25 O -0.19 -7.05 17.23 25.62 0.44 -6.60 16 26 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 30 H 0.08 1.18 7.66 -2.39 -0.02 1.16 16 31 H 0.17 3.31 6.30 -2.91 -0.02 3.29 16 32 H 0.41 11.84 8.71 -92.70 -0.81 11.03 16 33 H 0.27 14.05 6.26 -92.72 -0.58 13.46 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.05 2.13 6.52 -2.39 -0.02 2.12 16 36 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.05 1.57 7.11 -2.39 -0.02 1.55 16 38 H 0.05 1.55 6.91 -2.39 -0.02 1.54 16 39 H 0.14 4.63 5.30 -2.91 -0.02 4.62 16 40 H 0.16 4.40 7.60 -2.91 -0.02 4.38 16 Total: -1.00 -58.73 331.55 5.05 -53.67 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.46 Total: 23.74 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 3.85 Total: -29.89 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.51 Total: -70.96 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.21 Total: -23.34 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.05 Total: 46.79 kcal Total: -58.73 5.05 -53.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302162941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.593 kcal (2) G-P(sol) polarization free energy of solvation -58.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds