Wall clock time and date at job start Tue Mar 31 2020 07:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46919 * 2 1 4 4 C 1.50696 * 109.47490 * 119.99932 * 2 1 3 5 5 H 1.08002 * 119.99748 * 119.99511 * 4 2 1 6 6 C 1.37876 * 120.00330 * 300.00633 * 4 2 1 7 7 N 1.31515 * 119.99497 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00212 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47417 * 89.99861 * 8 6 4 10 10 H 1.48502 * 109.47322 * 209.99731 * 8 6 4 11 11 H 1.48497 * 109.47226 * 329.99482 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00666 * 2 1 3 13 13 C 1.30156 * 120.00364 * 129.39245 * 12 2 1 14 14 O 1.35260 * 119.99717 * 189.61893 * 13 12 2 15 15 C 1.47714 * 120.00304 * 9.61630 * 13 12 2 16 16 C 1.35898 * 126.42392 * 196.41854 * 15 13 12 17 17 O 1.34399 * 106.96000 * 179.77224 * 16 15 13 18 18 C 1.34009 * 108.18232 * 0.36221 * 17 16 15 19 19 C 1.50704 * 125.40375 * 179.89368 * 18 17 16 20 20 C 1.53175 * 109.54213 * 59.68882 * 19 18 17 21 21 C 1.53092 * 109.21411 * 183.19010 * 20 19 18 22 22 O 1.42902 * 109.41850 * 57.57885 * 21 20 19 23 23 C 1.42900 * 114.09497 * 298.84426 * 22 21 20 24 24 C 1.53090 * 109.41920 * 61.15550 * 23 22 21 25 25 N 1.30001 * 109.20201 * 359.62785 * 18 17 16 26 26 H 1.08998 * 109.47144 * 59.99264 * 1 2 3 27 27 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46827 * 299.99931 * 1 2 3 29 29 H 0.97004 * 119.99504 * 180.02562 * 7 6 4 30 30 H 0.96698 * 114.00253 * 359.97438 * 14 13 12 31 31 H 1.08002 * 126.51734 * 359.97438 * 16 15 13 32 32 H 1.08993 * 109.62000 * 179.91807 * 19 18 17 33 33 H 1.09003 * 109.52182 * 63.25244 * 20 19 18 34 34 H 1.08998 * 109.52331 * 303.12500 * 20 19 18 35 35 H 1.09002 * 109.48255 * 177.56481 * 21 20 19 36 36 H 1.09006 * 109.47794 * 297.59290 * 21 20 19 37 37 H 1.09003 * 109.48510 * 181.14213 * 23 22 21 38 38 H 1.09004 * 109.48223 * 301.17155 * 23 22 21 39 39 H 1.09000 * 109.52208 * 62.29867 * 24 23 22 40 40 H 1.09004 * 109.52732 * 182.42123 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.6297 -0.5459 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4860 -2.5662 3.7118 12 7 2.0183 -0.6905 -1.1962 13 6 2.9097 -0.1236 -1.9566 14 8 3.2181 -0.6657 -3.1568 15 6 3.5845 1.1118 -1.5089 16 6 4.2844 1.9770 -2.2889 17 8 4.7234 2.9614 -1.4861 18 6 4.3079 2.7006 -0.2390 19 6 4.5865 3.5551 0.9707 20 6 4.0085 4.9566 0.7521 21 6 4.3644 5.8409 1.9501 22 8 5.7841 5.8764 2.1092 23 6 6.3746 4.6005 2.3649 24 6 6.0995 3.6664 1.1836 25 7 3.6217 1.5965 -0.2391 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 0.7094 1.1616 3.4844 30 1 2.7257 -1.4722 -3.3623 31 1 4.4529 1.8915 -3.3523 32 1 4.1276 3.1045 1.8506 33 1 2.9246 4.8927 0.6558 34 1 4.4301 5.3870 -0.1563 35 1 3.9923 6.8512 1.7795 36 1 3.9076 5.4326 2.8517 37 1 7.4507 4.7171 2.4932 38 1 5.9442 4.1760 3.2719 39 1 6.5643 4.0700 0.2841 40 1 6.5120 2.6799 1.3955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330429066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:23 Heat of formation + Delta-G solvation = -68.145560 kcal Electronic energy + Delta-G solvation = -24490.730808 eV Core-core repulsion = 20886.049350 eV Total energy + Delta-G solvation = -3604.681458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.35643 -40.25925 -39.55262 -37.01280 -35.72055 -35.32613 -33.92130 -32.12034 -31.33928 -30.30234 -27.17911 -26.65329 -24.95731 -24.58000 -23.19822 -22.55411 -21.69157 -20.72841 -18.68776 -18.26281 -17.88352 -17.50668 -17.12345 -16.88465 -16.67632 -16.26393 -15.87564 -15.73199 -15.35845 -15.22451 -14.82200 -14.55021 -14.34195 -14.03847 -13.48047 -13.36975 -13.01748 -12.85352 -12.60861 -12.49531 -12.47016 -12.35427 -12.20021 -12.10179 -11.88239 -11.55253 -11.35706 -11.30385 -10.62874 -10.59381 -10.35593 -9.66502 -9.42508 -8.02576 -6.10505 0.21196 1.10406 1.36704 1.38168 1.48012 1.66879 2.11691 2.31290 2.46110 2.92214 3.17015 3.25544 3.62324 3.70570 3.76905 3.93050 3.97239 4.11510 4.26765 4.38658 4.55981 4.58875 4.66072 4.76180 4.76906 4.80636 4.81782 4.92680 4.98931 5.01889 5.06732 5.20355 5.23225 5.27876 5.58479 5.90245 6.01801 6.20701 6.36701 6.50093 6.74946 6.90569 7.29346 7.54822 9.02760 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.011333 B = 0.006821 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.013365 B = 4103.830959 C = 5762.710860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.197 3.803 3 H 0.054 0.946 4 C -0.496 4.496 5 H 0.026 0.974 6 C 0.026 3.974 7 N -0.909 5.909 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.281 1.281 12 N -0.579 5.579 13 C 0.382 3.618 14 O -0.465 6.465 15 C -0.053 4.053 16 C 0.002 3.998 17 O -0.195 6.195 18 C 0.185 3.815 19 C 0.009 3.991 20 C -0.143 4.143 21 C 0.065 3.935 22 O -0.392 6.392 23 C 0.064 3.936 24 C -0.143 4.143 25 N -0.452 5.452 26 H 0.014 0.986 27 H 0.022 0.978 28 H 0.069 0.931 29 H 0.260 0.740 30 H 0.421 0.579 31 H 0.269 0.731 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.054 0.946 37 H 0.122 0.878 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.217 10.173 -6.344 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 H 0.071 0.929 4 C -0.535 4.535 5 H 0.044 0.956 6 C -0.173 4.173 7 N -0.549 5.549 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.206 1.206 12 N -0.312 5.312 13 C 0.153 3.847 14 O -0.264 6.264 15 C -0.173 4.173 16 C -0.073 4.073 17 O -0.081 6.081 18 C -0.024 4.024 19 C -0.010 4.010 20 C -0.181 4.181 21 C -0.011 4.011 22 O -0.311 6.311 23 C -0.013 4.013 24 C -0.181 4.181 25 N -0.180 5.180 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.279 0.721 31 H 0.284 0.716 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.139 0.861 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.847 9.896 -5.673 15.069 hybrid contribution -0.088 -0.939 0.349 1.006 sum 9.759 8.956 -5.324 14.276 Atomic orbital electron populations 1.21614 0.97915 0.98627 0.99223 1.19521 0.91412 0.95000 0.85099 0.92915 1.20943 1.30339 1.10934 0.91246 0.95586 1.25392 0.95493 0.95731 1.00640 1.69982 1.37663 1.23723 1.23494 0.85768 0.78393 0.78718 0.79948 1.20081 1.20205 1.20623 1.71833 1.15716 1.32127 1.11552 1.20218 0.91379 0.87024 0.86087 1.84683 1.66435 1.46043 1.29230 1.20760 1.06869 0.99275 0.90388 1.25997 0.96659 0.86069 0.98540 1.84330 1.60646 1.44096 1.19011 1.26704 0.95304 0.94654 0.85714 1.19833 0.98834 0.93317 0.89023 1.22233 1.01631 0.92842 1.01423 1.22656 0.81188 1.01383 0.95912 1.87906 1.21012 1.29880 1.92259 1.22687 1.00302 0.82973 0.95339 1.22254 0.92454 1.01734 1.01651 1.71336 1.16056 1.09555 1.21088 0.96667 0.95857 0.91238 0.93093 0.72123 0.71589 0.89015 0.90964 0.89601 0.86133 0.92736 0.85971 0.92695 0.89555 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.22 9.29 71.98 0.67 -5.55 16 2 C 0.20 10.94 2.29 44.24 0.10 11.04 16 3 H 0.05 3.08 4.55 -2.39 -0.01 3.07 16 4 C -0.50 -29.60 8.77 25.60 0.22 -29.38 16 5 H 0.03 1.63 7.81 -2.91 -0.02 1.60 16 6 C 0.03 1.50 5.30 84.65 0.45 1.95 16 7 N -0.91 -52.68 11.32 21.45 0.24 -52.44 16 8 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 12 N -0.58 -28.42 10.08 -438.67 -4.42 -32.84 16 13 C 0.38 15.62 8.08 87.45 0.71 16.33 16 14 O -0.47 -13.90 13.44 -85.44 -1.15 -15.05 16 15 C -0.05 -2.13 6.39 40.47 0.26 -1.87 16 16 C 0.00 0.06 12.02 67.28 0.81 0.87 16 17 O -0.19 -5.91 10.73 -0.61 -0.01 -5.92 16 18 C 0.18 6.61 6.83 88.38 0.60 7.22 16 19 C 0.01 0.28 2.75 -11.42 -0.03 0.25 16 20 C -0.14 -3.53 5.40 30.68 0.17 -3.37 16 21 C 0.07 1.37 6.84 72.01 0.49 1.86 16 22 O -0.39 -8.81 10.77 -148.98 -1.60 -10.41 16 23 C 0.06 1.28 6.84 72.01 0.49 1.77 16 24 C -0.14 -3.35 5.41 30.69 0.17 -3.18 16 25 N -0.45 -20.22 8.09 -292.95 -2.37 -22.59 16 26 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.02 1.21 8.14 -2.39 -0.02 1.20 16 28 H 0.07 3.98 6.07 -2.38 -0.01 3.97 16 29 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.42 9.69 8.97 -74.06 -0.66 9.03 16 31 H 0.27 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -74.34 334.84 -1.77 -76.12 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.40 Total: 17.57 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 5.11 Total: -2.06 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -6.55 Total: -107.87 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -2.76 Total: -31.38 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.34 -1.77 -76.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330429066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.972 kcal (2) G-P(sol) polarization free energy of solvation -74.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds