Wall clock time and date at job start Tue Mar 31 2020 06:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47405 * 2 1 4 4 H 1.08998 * 109.46991 * 305.55155 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55526 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31513 * 119.99914 * 196.28563 * 7 5 3 9 9 Si 1.86797 * 119.99790 * 16.28878 * 7 5 3 10 10 H 1.48505 * 109.46942 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47196 * 299.99235 * 9 7 5 12 12 H 1.48493 * 109.47585 * 60.00040 * 9 7 5 13 13 N 1.46502 * 109.46991 * 65.55382 * 3 2 1 14 14 C 1.34769 * 119.99735 * 274.99969 * 13 3 2 15 15 O 1.21608 * 120.00649 * 0.02562 * 14 13 3 16 16 C 1.47428 * 119.99817 * 180.02562 * 14 13 3 17 17 N 1.36066 * 126.44834 * 0.02562 * 16 14 13 18 18 C 1.29935 * 108.48021 * 180.02562 * 17 16 14 19 19 O 1.34054 * 109.23967 * 359.97438 * 18 17 16 20 20 C 1.34262 * 108.22587 * 359.73189 * 19 18 17 21 21 C 1.50699 * 126.52328 * 180.26445 * 20 19 18 22 22 H 1.09002 * 110.27399 * 164.49181 * 21 20 19 23 23 C 1.54945 * 110.31010 * 286.58254 * 21 20 19 24 24 C 1.55414 * 100.89455 * 155.28730 * 23 21 20 25 25 C 1.54377 * 102.30733 * 325.99066 * 24 23 21 26 26 O 1.43236 * 107.59076 * 21.28608 * 25 24 23 27 27 H 1.08992 * 109.47766 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46562 * 300.00018 * 1 2 3 29 29 H 1.09000 * 109.47473 * 59.99402 * 1 2 3 30 30 H 1.08999 * 109.46739 * 239.99916 * 2 1 3 31 31 H 1.09000 * 109.47473 * 120.00598 * 2 1 3 32 32 H 0.97000 * 119.99789 * 354.82826 * 8 7 5 33 33 H 0.96993 * 119.99756 * 95.00227 * 13 3 2 34 34 H 1.07997 * 125.38081 * 180.02562 * 18 17 16 35 35 H 1.08996 * 111.12398 * 273.27897 * 23 21 20 36 36 H 1.09005 * 111.12766 * 37.43859 * 23 21 20 37 37 H 1.08997 * 110.88463 * 207.75148 * 24 23 21 38 38 H 1.09006 * 110.93073 * 84.25042 * 24 23 21 39 39 H 1.09005 * 109.82908 * 261.76789 * 25 24 23 40 40 H 1.09005 * 109.83243 * 140.79755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5408 1.4446 -0.1375 6 1 4.1568 1.8040 0.6734 7 6 4.1273 0.9877 -1.2987 8 7 5.4072 0.6858 -1.3142 9 14 3.1039 0.7977 -2.8498 10 1 3.9635 0.2945 -3.9513 11 1 2.0023 -0.1665 -2.6010 12 1 2.5328 2.1145 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4478 2.6599 1.3854 15 8 -0.3376 2.6304 0.4574 16 6 0.0695 3.3155 2.6506 17 7 0.8405 3.4251 3.7663 18 6 0.1648 4.0657 4.6726 19 8 -1.0409 4.3850 4.1813 20 6 -1.1143 3.9304 2.9201 21 6 -2.2862 4.0703 1.9831 22 1 -1.9782 3.8593 0.9590 23 6 -3.4311 3.1165 2.4076 24 6 -4.6617 3.8463 1.8006 25 6 -4.2679 5.3319 1.9461 26 8 -2.8425 5.3914 2.0743 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9549 0.8549 -0.5317 33 1 2.2902 2.1167 1.9977 34 1 0.5189 4.3040 5.6647 35 1 -3.3023 2.1278 1.9673 36 1 -3.5083 3.0540 3.4931 37 1 -5.5641 3.6265 2.3710 38 1 -4.7935 3.5808 0.7517 39 1 -4.7371 5.7535 2.8351 40 1 -4.5831 5.8863 1.0621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332366652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:08 Heat of formation + Delta-G solvation = -63.819595 kcal Electronic energy + Delta-G solvation = -24342.586141 eV Core-core repulsion = 20738.092271 eV Total energy + Delta-G solvation = -3604.493870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.42996 -39.53836 -39.07438 -35.36834 -34.77281 -32.51614 -32.37549 -31.71354 -31.36195 -28.37104 -27.21417 -24.11028 -23.52172 -22.32289 -21.94292 -21.41196 -20.47958 -19.56956 -18.39420 -17.31344 -16.93817 -16.74707 -16.43893 -15.78398 -15.44207 -15.16018 -14.66044 -14.08619 -13.95895 -13.72311 -13.34751 -13.25002 -12.60264 -12.51774 -12.32159 -12.09674 -11.99605 -11.79027 -11.65167 -11.24899 -11.16228 -10.92259 -10.77317 -10.70379 -10.43848 -9.98352 -9.88203 -9.61551 -9.40497 -9.05192 -8.92566 -8.32854 -8.10385 -6.56760 -4.20174 1.09366 2.16597 2.51433 3.38398 3.45102 3.49535 3.59413 3.75935 3.77686 4.11349 4.27381 4.35308 4.42811 4.62035 4.87029 4.99972 5.10503 5.17553 5.18716 5.40936 5.45577 5.49285 5.58272 5.63767 5.73372 5.95398 6.06260 6.07768 6.12673 6.26747 6.67639 6.70797 6.77102 6.92492 7.02169 7.30393 7.36657 7.49619 7.66456 8.25791 8.45283 8.68673 8.91768 9.49036 10.84338 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.004542 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.273566 B = 6163.322625 C = 6896.383758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.246 3.754 4 H 0.044 0.956 5 C -0.617 4.617 6 H 0.063 0.937 7 C 0.039 3.961 8 N -0.898 5.898 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.676 5.676 14 C 0.586 3.414 15 O -0.547 6.547 16 C -0.048 4.048 17 N -0.460 5.460 18 C 0.171 3.829 19 O -0.192 6.192 20 C 0.028 3.972 21 C 0.157 3.843 22 H 0.140 0.860 23 C -0.146 4.146 24 C -0.154 4.154 25 C 0.050 3.950 26 O -0.375 6.375 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.269 0.731 33 H 0.402 0.598 34 H 0.254 0.746 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.523 5.739 10.468 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C 0.143 3.857 4 H 0.062 0.938 5 C -0.654 4.654 6 H 0.081 0.919 7 C -0.167 4.167 8 N -0.531 5.531 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.322 5.322 14 C 0.369 3.631 15 O -0.427 6.427 16 C -0.169 4.169 17 N -0.189 5.189 18 C -0.057 4.057 19 O -0.078 6.078 20 C -0.029 4.029 21 C 0.100 3.900 22 H 0.157 0.843 23 C -0.184 4.184 24 C -0.191 4.191 25 C -0.026 4.026 26 O -0.294 6.294 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.237 0.763 34 H 0.270 0.730 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.230 5.135 8.325 20.689 hybrid contribution -0.261 0.730 2.318 2.444 sum -18.491 5.865 10.643 22.127 Atomic orbital electron populations 1.21888 0.97429 0.98937 1.01858 1.22369 0.93808 0.99643 1.02039 1.19152 0.96081 0.88629 0.81860 0.93825 1.22102 0.89576 1.49506 1.04258 0.91923 1.25680 0.97560 0.92356 1.01126 1.70868 1.07056 1.40874 1.34336 0.84121 0.75513 0.77716 0.75868 1.20911 1.19452 1.20575 1.46121 1.13886 1.53830 1.18386 1.16746 0.83339 0.78829 0.84136 1.90698 1.51414 1.61142 1.39475 1.21904 0.91629 1.07159 0.96192 1.70826 1.31554 1.16533 1.00011 1.28054 0.79359 0.97373 1.00942 1.84369 1.36612 1.61680 1.25140 1.23545 0.97923 0.98167 0.83254 1.21956 0.87991 0.83244 0.96836 0.84315 1.23326 0.92964 1.00091 1.02013 1.23154 0.98620 0.94634 1.02713 1.23167 0.81145 0.96639 1.01653 1.88488 1.19844 1.26535 1.94575 0.94996 0.93443 0.92878 0.91089 0.92957 0.92064 0.76324 0.73014 0.88564 0.90235 0.89624 0.89751 0.91188 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.52 37.15 0.32 -2.53 16 2 C -0.14 -3.13 5.27 -26.73 -0.14 -3.27 16 3 C 0.25 5.95 1.82 -69.08 -0.13 5.83 16 4 H 0.04 1.13 6.25 -51.93 -0.32 0.80 16 5 C -0.62 -16.95 9.01 -34.44 -0.31 -17.26 16 6 H 0.06 1.82 7.96 -52.49 -0.42 1.41 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.90 -26.95 13.70 55.43 0.76 -26.19 16 9 Si 1.04 25.03 26.27 -169.99 -4.47 20.56 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -5.97 5.67 56.52 0.32 -5.65 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -14.64 5.02 -56.01 -0.28 -14.92 16 14 C 0.59 11.85 6.41 -12.52 -0.08 11.77 16 15 O -0.55 -11.56 11.71 5.27 0.06 -11.49 16 16 C -0.05 -0.84 6.99 -83.02 -0.58 -1.42 16 17 N -0.46 -7.26 11.06 -11.48 -0.13 -7.39 16 18 C 0.17 2.00 13.19 51.96 0.69 2.68 16 19 O -0.19 -2.58 10.73 6.47 0.07 -2.51 16 20 C 0.03 0.43 6.37 -35.08 -0.22 0.21 16 21 C 0.16 2.20 3.67 -26.86 -0.10 2.10 16 22 H 0.14 2.19 5.88 -51.93 -0.31 1.89 16 23 C -0.15 -1.56 6.57 -24.42 -0.16 -1.72 16 24 C -0.15 -1.27 7.02 -24.73 -0.17 -1.44 16 25 C 0.05 0.48 7.80 37.88 0.30 0.78 16 26 O -0.37 -5.19 11.03 -35.25 -0.39 -5.57 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.93 5.63 -51.92 -0.29 0.64 16 29 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 30 H 0.07 1.65 4.74 -51.93 -0.25 1.40 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 33 H 0.40 8.43 8.25 -40.82 -0.34 8.10 16 34 H 0.25 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -32.50 325.78 -5.52 -38.02 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.37 Total: 7.86 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.69 Total: -3.26 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.35 Total: -48.50 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.26 Total: -19.58 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.47 Total: 20.56 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.50 -5.52 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332366652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.803 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds