Wall clock time and date at job start Tue Mar 31 2020 06:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47405 * 2 1 4 4 H 1.08998 * 109.46991 * 305.55155 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55526 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31513 * 119.99914 * 196.28563 * 7 5 3 9 9 Si 1.86797 * 119.99790 * 16.28878 * 7 5 3 10 10 H 1.48505 * 109.46942 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47196 * 299.99235 * 9 7 5 12 12 H 1.48493 * 109.47585 * 60.00040 * 9 7 5 13 13 N 1.46502 * 109.46991 * 65.55382 * 3 2 1 14 14 C 1.34769 * 119.99735 * 274.99969 * 13 3 2 15 15 O 1.21608 * 120.00649 * 0.02562 * 14 13 3 16 16 C 1.47428 * 119.99817 * 180.02562 * 14 13 3 17 17 N 1.36066 * 126.44834 * 0.02562 * 16 14 13 18 18 C 1.29935 * 108.48021 * 180.02562 * 17 16 14 19 19 O 1.34054 * 109.23967 * 359.97438 * 18 17 16 20 20 C 1.34262 * 108.22587 * 359.73189 * 19 18 17 21 21 C 1.50699 * 126.52328 * 180.26445 * 20 19 18 22 22 H 1.09002 * 110.27399 * 164.49181 * 21 20 19 23 23 C 1.54945 * 110.31010 * 286.58254 * 21 20 19 24 24 C 1.55414 * 100.89455 * 155.28730 * 23 21 20 25 25 C 1.54377 * 102.30733 * 325.99066 * 24 23 21 26 26 O 1.43236 * 107.59076 * 21.28608 * 25 24 23 27 27 H 1.08992 * 109.47766 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46562 * 300.00018 * 1 2 3 29 29 H 1.09000 * 109.47473 * 59.99402 * 1 2 3 30 30 H 1.08999 * 109.46739 * 239.99916 * 2 1 3 31 31 H 1.09000 * 109.47473 * 120.00598 * 2 1 3 32 32 H 0.97000 * 119.99789 * 354.82826 * 8 7 5 33 33 H 0.96993 * 119.99756 * 95.00227 * 13 3 2 34 34 H 1.07997 * 125.38081 * 180.02562 * 18 17 16 35 35 H 1.08996 * 111.12398 * 273.27897 * 23 21 20 36 36 H 1.09005 * 111.12766 * 37.43859 * 23 21 20 37 37 H 1.08997 * 110.88463 * 207.75148 * 24 23 21 38 38 H 1.09006 * 110.93073 * 84.25042 * 24 23 21 39 39 H 1.09005 * 109.82908 * 261.76789 * 25 24 23 40 40 H 1.09005 * 109.83243 * 140.79755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5408 1.4446 -0.1375 6 1 4.1568 1.8040 0.6734 7 6 4.1273 0.9877 -1.2987 8 7 5.4072 0.6858 -1.3142 9 14 3.1039 0.7977 -2.8498 10 1 3.9635 0.2945 -3.9513 11 1 2.0023 -0.1665 -2.6010 12 1 2.5328 2.1145 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4478 2.6599 1.3854 15 8 -0.3376 2.6304 0.4574 16 6 0.0695 3.3155 2.6506 17 7 0.8405 3.4251 3.7663 18 6 0.1648 4.0657 4.6726 19 8 -1.0409 4.3850 4.1813 20 6 -1.1143 3.9304 2.9201 21 6 -2.2862 4.0703 1.9831 22 1 -1.9782 3.8593 0.9590 23 6 -3.4311 3.1165 2.4076 24 6 -4.6617 3.8463 1.8006 25 6 -4.2679 5.3319 1.9461 26 8 -2.8425 5.3914 2.0743 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9549 0.8549 -0.5317 33 1 2.2902 2.1167 1.9977 34 1 0.5189 4.3040 5.6647 35 1 -3.3023 2.1278 1.9673 36 1 -3.5083 3.0540 3.4931 37 1 -5.5641 3.6265 2.3710 38 1 -4.7935 3.5808 0.7517 39 1 -4.7371 5.7535 2.8351 40 1 -4.5831 5.8863 1.0621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332366652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:08 Heat of formation + Delta-G solvation = -90.148369 kcal Electronic energy + Delta-G solvation = -24343.727842 eV Core-core repulsion = 20738.092271 eV Total energy + Delta-G solvation = -3605.635571 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.54251 -40.77502 -40.36311 -37.17198 -35.95480 -34.47605 -33.40821 -33.13864 -32.61267 -29.61342 -28.87915 -25.50736 -24.49686 -24.16858 -22.69700 -22.65771 -21.82961 -21.32609 -20.11478 -18.91197 -17.90015 -17.86877 -17.54397 -17.32855 -16.69866 -16.35627 -16.04608 -15.59361 -15.14420 -15.05722 -14.66768 -14.54322 -14.36516 -14.19856 -14.06539 -13.64154 -12.96412 -12.84829 -12.69973 -12.51168 -12.45957 -12.37684 -12.29454 -11.98716 -11.84357 -11.77527 -11.42542 -11.19842 -11.03414 -10.72834 -10.49989 -10.13868 -9.82366 -8.82731 -6.47100 -0.09503 1.03354 1.44869 1.45496 1.51393 1.70274 2.20107 2.30388 2.41842 2.67294 2.99759 3.09301 3.37912 3.42158 3.80320 3.89437 4.02621 4.14798 4.26909 4.30812 4.35419 4.39329 4.50723 4.55710 4.74488 4.80428 4.83408 4.89334 4.93815 5.09749 5.11021 5.16350 5.19805 5.28819 5.52851 5.56441 5.64873 5.82993 5.97314 6.34360 6.48560 6.74753 7.17747 7.32022 8.57121 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.004542 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.273566 B = 6163.322625 C = 6896.383758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.252 3.748 4 H 0.030 0.970 5 C -0.617 4.617 6 H 0.033 0.967 7 C -0.005 4.005 8 N -0.927 5.927 9 Si 1.073 2.927 10 H -0.282 1.282 11 H -0.238 1.238 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.586 3.414 15 O -0.559 6.559 16 C -0.080 4.080 17 N -0.498 5.498 18 C 0.202 3.798 19 O -0.189 6.189 20 C 0.037 3.963 21 C 0.151 3.849 22 H 0.115 0.885 23 C -0.142 4.142 24 C -0.144 4.144 25 C 0.040 3.960 26 O -0.399 6.399 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.256 0.744 33 H 0.403 0.597 34 H 0.311 0.689 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.504 5.931 11.598 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.048 0.952 5 C -0.655 4.655 6 H 0.051 0.949 7 C -0.205 4.205 8 N -0.562 5.562 9 Si 0.894 3.106 10 H -0.207 1.207 11 H -0.162 1.162 12 H -0.198 1.198 13 N -0.332 5.332 14 C 0.372 3.628 15 O -0.440 6.440 16 C -0.199 4.199 17 N -0.227 5.227 18 C -0.026 4.026 19 O -0.075 6.075 20 C -0.021 4.021 21 C 0.094 3.906 22 H 0.132 0.868 23 C -0.179 4.179 24 C -0.181 4.181 25 C -0.036 4.036 26 O -0.319 6.319 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.237 0.763 34 H 0.325 0.675 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.230 5.329 9.477 23.853 hybrid contribution 0.667 0.806 2.127 2.370 sum -20.564 6.135 11.604 24.396 Atomic orbital electron populations 1.21766 0.95084 1.00655 1.01530 1.22255 0.95823 0.97838 1.01611 1.18886 0.93620 0.90014 0.82734 0.95202 1.22277 0.91503 1.48468 1.03278 0.94900 1.26937 0.97730 0.91810 1.04024 1.70980 1.08061 1.43216 1.33912 0.83731 0.75286 0.78867 0.72722 1.20719 1.16176 1.19813 1.45979 1.14848 1.54828 1.17537 1.17028 0.82423 0.78157 0.85169 1.90678 1.51537 1.61422 1.40391 1.21494 0.93124 1.09331 0.95987 1.70785 1.32583 1.18889 1.00445 1.29326 0.77782 0.93906 1.01604 1.84413 1.37394 1.61479 1.24198 1.23725 0.97501 0.96885 0.84002 1.21880 0.88767 0.84551 0.95441 0.86775 1.23320 0.92598 0.99370 1.02626 1.23166 0.98502 0.93111 1.03312 1.23462 0.79127 0.97900 1.03068 1.88456 1.22321 1.26459 1.94644 0.92189 0.93686 0.93298 0.91731 0.93146 0.93434 0.76278 0.67468 0.88763 0.89418 0.86813 0.89375 0.89448 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 8.52 71.98 0.61 -4.43 16 2 C -0.14 -6.03 5.27 30.59 0.16 -5.86 16 3 C 0.25 12.32 1.82 44.25 0.08 12.40 16 4 H 0.03 1.56 6.25 -2.39 -0.01 1.55 16 5 C -0.62 -34.97 9.01 25.60 0.23 -34.74 16 6 H 0.03 2.01 7.96 -2.91 -0.02 1.98 16 7 C 0.00 -0.27 5.32 84.66 0.45 0.18 16 8 N -0.93 -57.15 13.70 21.45 0.29 -56.85 16 9 Si 1.07 50.31 26.27 68.60 1.80 52.11 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.24 -9.92 5.67 99.48 0.56 -9.36 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.69 -30.31 5.02 -449.37 -2.26 -32.57 16 14 C 0.59 24.00 6.41 86.67 0.56 24.56 16 15 O -0.56 -23.82 11.71 -4.06 -0.05 -23.87 16 16 C -0.08 -2.80 6.99 40.41 0.28 -2.51 16 17 N -0.50 -15.21 11.06 -305.15 -3.37 -18.58 16 18 C 0.20 4.14 13.19 130.52 1.72 5.86 16 19 O -0.19 -4.62 10.73 0.32 0.00 -4.62 16 20 C 0.04 1.09 6.37 25.18 0.16 1.25 16 21 C 0.15 4.11 3.67 30.51 0.11 4.23 16 22 H 0.11 3.66 5.88 -2.39 -0.01 3.64 16 23 C -0.14 -2.74 6.57 32.09 0.21 -2.53 16 24 C -0.14 -1.96 7.02 31.89 0.22 -1.74 16 25 C 0.04 0.67 7.80 72.45 0.56 1.23 16 26 O -0.40 -10.53 11.03 -148.96 -1.64 -12.18 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.71 5.63 -2.38 -0.01 1.70 16 29 H 0.05 1.88 7.88 -2.39 -0.02 1.86 16 30 H 0.06 2.91 4.74 -2.39 -0.01 2.90 16 31 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.26 15.95 8.73 -92.71 -0.81 15.14 16 33 H 0.40 17.50 8.25 -92.71 -0.77 16.73 16 34 H 0.31 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.09 1.54 8.05 -2.38 -0.02 1.52 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.08 1.20 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -73.00 325.78 0.28 -72.72 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.13 Total: 25.93 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.37 Total: -2.10 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -5.34 Total: -108.00 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.69 Total: -40.66 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 1.80 Total: 52.11 kcal Total: -73.00 0.28 -72.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332366652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.424 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds