Wall clock time and date at job start Tue Mar 31 2020 06:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21613 * 119.99796 * 359.97438 * 14 13 3 16 16 C 1.47420 * 120.00192 * 180.02562 * 14 13 3 17 17 N 1.36067 * 126.45275 * 0.02562 * 16 14 13 18 18 C 1.29932 * 108.48114 * 179.97438 * 17 16 14 19 19 O 1.34049 * 109.24119 * 0.02562 * 18 17 16 20 20 C 1.34253 * 108.23004 * 359.76565 * 19 18 17 21 21 C 1.50704 * 126.52716 * 180.22873 * 20 19 18 22 22 H 1.09002 * 109.82377 * 195.86341 * 21 20 19 23 23 C 1.54383 * 109.82637 * 74.98030 * 21 20 19 24 24 C 1.55448 * 102.18219 * 219.17838 * 23 21 20 25 25 C 1.54938 * 100.99020 * 34.04475 * 24 23 21 26 26 O 1.43230 * 109.83051 * 316.75512 * 21 20 19 27 27 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 29 29 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 30 30 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 31 31 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 32 32 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 34 34 H 1.07998 * 125.37904 * 180.02562 * 18 17 16 35 35 H 1.08996 * 110.84845 * 337.32082 * 23 21 20 36 36 H 1.09006 * 110.84763 * 100.94056 * 23 21 20 37 37 H 1.08998 * 111.06469 * 276.11683 * 24 23 21 38 38 H 1.09006 * 111.17858 * 152.00961 * 24 23 21 39 39 H 1.08999 * 110.31168 * 204.68855 * 25 24 23 40 40 H 1.09002 * 110.31654 * 82.51680 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3415 2.6319 -0.4319 16 6 0.0452 3.3230 -2.6269 17 7 0.8052 3.4344 -3.7500 18 6 0.1212 4.0776 -4.6481 19 8 -1.0793 4.3969 -4.1442 20 6 -1.1448 3.9299 -2.8872 21 6 -2.3127 4.0562 -1.9431 22 1 -1.9896 3.8414 -0.9245 23 6 -3.4290 3.0732 -2.3567 24 6 -4.7135 3.9137 -2.1118 25 6 -4.2114 5.3335 -2.4759 26 8 -2.8526 5.3811 -2.0126 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 5.8763 0.4948 2.1200 33 1 2.2721 2.1230 -1.9977 34 1 0.4653 4.3170 -5.6434 35 1 -3.3374 2.8025 -3.4085 36 1 -3.4182 2.1855 -1.7242 37 1 -5.0225 3.8619 -1.0678 38 1 -5.5210 3.6008 -2.7739 39 1 -4.8110 6.0888 -1.9679 40 1 -4.2485 5.4829 -3.5550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332366694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:10 Heat of formation + Delta-G solvation = -83.250340 kcal Electronic energy + Delta-G solvation = -24371.794824 eV Core-core repulsion = 20766.458373 eV Total energy + Delta-G solvation = -3605.336450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.50793 -40.77318 -40.36922 -37.21365 -35.91439 -34.40998 -33.39343 -33.19863 -32.55536 -29.74771 -29.00430 -25.65755 -24.41291 -24.38587 -22.83041 -22.65312 -21.82250 -21.36446 -19.75543 -18.44905 -17.88344 -17.80577 -17.58360 -17.38618 -16.86283 -16.44538 -16.16134 -15.88012 -15.12861 -15.07528 -14.86090 -14.59264 -14.14967 -14.11529 -13.78518 -13.67439 -12.99724 -12.93203 -12.83799 -12.77047 -12.47021 -12.36886 -12.26417 -11.98152 -11.85468 -11.80184 -11.41614 -11.27015 -11.04892 -10.86927 -10.83872 -10.10859 -9.77920 -8.38609 -6.45604 -0.04349 1.06949 1.28033 1.35757 1.46142 1.49573 2.22692 2.26154 2.31513 2.76220 2.96639 3.12376 3.33741 3.44746 3.82897 3.86113 4.06806 4.17231 4.22693 4.31002 4.31658 4.37806 4.45267 4.61486 4.75368 4.79103 4.82601 4.88093 4.97211 5.00509 5.09799 5.15206 5.18633 5.21911 5.37265 5.50762 5.57896 5.83713 6.08604 6.40349 6.55259 6.79519 7.13042 7.29067 8.77021 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.004435 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.872833 B = 6312.447530 C = 7017.977099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C 0.250 3.750 4 H 0.031 0.969 5 C -0.539 4.539 6 H 0.049 0.951 7 C 0.029 3.971 8 N -0.935 5.935 9 Si 0.940 3.060 10 H -0.256 1.256 11 H -0.292 1.292 12 H -0.255 1.255 13 N -0.683 5.683 14 C 0.588 3.412 15 O -0.561 6.561 16 C -0.083 4.083 17 N -0.497 5.497 18 C 0.200 3.800 19 O -0.190 6.190 20 C 0.027 3.973 21 C 0.152 3.848 22 H 0.121 0.879 23 C -0.142 4.142 24 C -0.143 4.143 25 C 0.037 3.963 26 O -0.393 6.393 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.271 0.729 33 H 0.406 0.594 34 H 0.310 0.690 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.595 5.006 -12.540 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.048 0.952 5 C -0.577 4.577 6 H 0.067 0.933 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.767 3.233 10 H -0.182 1.182 11 H -0.219 1.219 12 H -0.179 1.179 13 N -0.330 5.330 14 C 0.374 3.626 15 O -0.442 6.442 16 C -0.202 4.202 17 N -0.225 5.225 18 C -0.029 4.029 19 O -0.076 6.076 20 C -0.031 4.031 21 C 0.094 3.906 22 H 0.139 0.861 23 C -0.179 4.179 24 C -0.180 4.180 25 C -0.039 4.039 26 O -0.312 6.312 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.241 0.759 34 H 0.324 0.676 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.238 4.882 -11.795 24.779 hybrid contribution 0.318 -0.166 0.283 0.457 sum -20.919 4.716 -11.512 24.339 Atomic orbital electron populations 1.21764 0.94774 1.00855 1.01701 1.22199 0.96283 0.97968 1.01098 1.18911 0.93376 0.89983 0.83179 0.95167 1.21266 0.90354 1.39162 1.06963 0.93317 1.25606 0.95877 0.95695 0.99890 1.69989 1.10481 1.46053 1.30798 0.85972 0.79403 0.80022 0.77935 1.18204 1.21902 1.17895 1.45884 1.15086 1.54704 1.17358 1.17018 0.82309 0.78053 0.85213 1.90684 1.52226 1.61469 1.39830 1.21477 0.93269 1.09606 0.95862 1.70773 1.32608 1.18759 1.00383 1.29310 0.78006 0.93986 1.01565 1.84399 1.37775 1.61155 1.24285 1.24297 0.98039 0.96465 0.84251 1.21740 0.88719 0.84596 0.95582 0.86142 1.23206 0.92743 0.98682 1.03304 1.23331 0.97205 0.93192 1.04304 1.23764 0.81026 0.98844 1.00222 1.88518 1.29419 1.25977 1.87296 0.91933 0.93634 0.93134 0.91727 0.93300 0.91977 0.75911 0.67562 0.89693 0.88657 0.89319 0.86726 0.87501 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.51 71.98 0.61 -4.46 16 2 C -0.14 -6.02 5.11 30.59 0.16 -5.86 16 3 C 0.25 12.26 1.83 44.25 0.08 12.35 16 4 H 0.03 1.62 6.63 -2.39 -0.02 1.60 16 5 C -0.54 -30.74 9.31 25.60 0.24 -30.51 16 6 H 0.05 3.02 7.98 -2.91 -0.02 2.99 16 7 C 0.03 1.68 5.45 84.66 0.46 2.14 16 8 N -0.93 -57.36 13.96 21.45 0.30 -57.06 16 9 Si 0.94 44.99 24.41 68.60 1.67 46.67 16 10 H -0.26 -11.45 6.84 99.48 0.68 -10.77 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.25 -11.91 6.52 99.48 0.65 -11.26 16 13 N -0.68 -29.93 5.02 -449.40 -2.25 -32.18 16 14 C 0.59 23.96 6.38 86.66 0.55 24.51 16 15 O -0.56 -24.03 11.70 -4.07 -0.05 -24.08 16 16 C -0.08 -2.87 6.99 40.41 0.28 -2.59 16 17 N -0.50 -14.97 11.06 -305.15 -3.37 -18.35 16 18 C 0.20 4.01 13.19 130.52 1.72 5.74 16 19 O -0.19 -4.52 10.73 0.49 0.01 -4.51 16 20 C 0.03 0.80 6.20 25.19 0.16 0.96 16 21 C 0.15 4.09 3.77 30.32 0.11 4.20 16 22 H 0.12 3.89 5.84 -2.39 -0.01 3.87 16 23 C -0.14 -2.69 6.55 31.91 0.21 -2.49 16 24 C -0.14 -1.87 7.16 32.10 0.23 -1.64 16 25 C 0.04 0.59 7.78 72.64 0.57 1.15 16 26 O -0.39 -10.24 11.00 -148.92 -1.64 -11.88 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.80 7.84 -2.39 -0.02 1.78 16 29 H 0.05 1.91 5.64 -2.39 -0.01 1.89 16 30 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.05 2.21 3.24 -2.39 -0.01 2.20 16 32 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.41 17.30 8.27 -92.71 -0.77 16.53 16 34 H 0.31 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.08 1.49 7.84 -2.39 -0.02 1.47 16 36 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -73.48 323.21 0.27 -73.21 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.23 Total: 24.69 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.38 Total: 3.50 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -5.33 Total: -107.59 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.68 Total: -40.48 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.67 Total: 46.67 kcal Total: -73.48 0.27 -73.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332366694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.041 kcal (2) G-P(sol) polarization free energy of solvation -73.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds