Wall clock time and date at job start Tue Mar 31 2020 06:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 6 6 H 1.07999 * 119.99742 * 119.99976 * 5 3 2 7 7 C 1.37875 * 120.00221 * 300.00211 * 5 3 2 8 8 N 1.31519 * 119.99615 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99983 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47285 * 89.99870 * 9 7 5 11 11 H 1.48503 * 109.47250 * 209.99665 * 9 7 5 12 12 H 1.48499 * 109.47267 * 329.99827 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 14 14 C 1.34777 * 120.00075 * 84.99755 * 13 3 2 15 15 O 1.21613 * 120.00023 * 0.02562 * 14 13 3 16 16 C 1.47415 * 120.00217 * 179.97438 * 14 13 3 17 17 N 1.36068 * 126.44679 * 0.03153 * 16 14 13 18 18 C 1.29939 * 108.47698 * 179.97438 * 17 16 14 19 19 O 1.34056 * 109.24291 * 359.97438 * 18 17 16 20 20 C 1.34258 * 108.22395 * 359.77149 * 19 18 17 21 21 C 1.50698 * 126.52219 * 180.22515 * 20 19 18 22 22 H 1.09002 * 110.27279 * 164.45981 * 21 20 19 23 23 C 1.54944 * 110.31517 * 286.55216 * 21 20 19 24 24 C 1.55410 * 100.89478 * 155.28686 * 23 21 20 25 25 C 1.54379 * 102.31037 * 325.99166 * 24 23 21 26 26 O 1.43240 * 107.58878 * 21.28760 * 25 24 23 27 27 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 28 28 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 29 29 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 31 31 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 32 32 H 0.96997 * 119.99545 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00274 * 264.99726 * 13 3 2 34 34 H 1.07998 * 125.37973 * 180.02562 * 18 17 16 35 35 H 1.08995 * 111.12576 * 273.28575 * 23 21 20 36 36 H 1.09008 * 111.12244 * 37.44034 * 23 21 20 37 37 H 1.09006 * 110.88418 * 207.75438 * 24 23 21 38 38 H 1.09000 * 110.93381 * 84.25901 * 24 23 21 39 39 H 1.08993 * 109.83233 * 261.76770 * 25 24 23 40 40 H 1.09001 * 109.82901 * 140.79854 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4060 0.3374 2.1734 9 14 6.0049 0.8799 1.3812 10 1 6.4428 2.1128 2.0837 11 1 6.4389 -0.3112 2.1547 12 1 6.6130 0.8393 0.0271 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3414 2.6326 -0.4317 16 6 0.0455 3.3239 -2.6265 17 7 0.8060 3.4361 -3.7492 18 6 0.1222 4.0800 -4.6471 19 8 -1.0789 4.3979 -4.1438 20 6 -1.1451 3.9293 -2.8874 21 6 -2.3138 4.0537 -1.9442 22 1 -2.2021 3.3600 -1.1109 23 6 -2.4308 5.5077 -1.4215 24 6 -3.9413 5.5695 -1.0612 25 6 -4.5743 4.6641 -2.1395 26 8 -3.5451 3.8028 -2.6401 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 3.8291 -0.0604 2.9503 33 1 2.2720 2.1231 -1.9978 34 1 0.4667 4.3203 -5.6421 35 1 -1.8084 5.6594 -0.5397 36 1 -2.1842 6.2269 -2.2026 37 1 -4.3183 6.5892 -1.1407 38 1 -4.1204 5.1684 -0.0636 39 1 -4.9712 5.2758 -2.9495 40 1 -5.3735 4.0679 -1.6990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332366695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:14 Heat of formation + Delta-G solvation = -64.423552 kcal Electronic energy + Delta-G solvation = -24232.892711 eV Core-core repulsion = 20628.372652 eV Total energy + Delta-G solvation = -3604.520060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.34258 -39.45618 -38.87058 -35.14677 -34.67552 -32.44476 -32.29573 -31.61144 -30.86065 -28.26829 -26.97396 -24.13271 -23.44284 -22.78912 -21.87130 -21.23903 -20.30047 -19.37067 -18.13222 -16.90665 -16.69532 -16.66146 -16.05660 -15.57806 -15.29138 -15.04225 -14.43989 -14.27740 -13.94925 -13.78034 -13.26707 -13.11381 -12.65932 -12.14060 -12.02594 -11.92358 -11.58162 -11.55161 -11.24558 -11.15034 -11.07809 -10.94843 -10.82731 -10.69445 -10.31717 -10.17467 -9.85928 -9.61977 -9.26052 -9.03906 -8.82893 -8.48511 -7.83167 -6.11038 -4.19863 1.18917 2.26251 2.59678 3.26581 3.33202 3.35944 3.58856 3.87715 3.92416 4.19184 4.32608 4.41951 4.45027 4.69303 4.94418 5.07987 5.18861 5.20396 5.33131 5.48476 5.52341 5.57058 5.67590 5.72838 5.80840 6.03958 6.23991 6.41260 6.47916 6.67335 6.77860 7.06963 7.18556 7.35488 7.41920 7.51072 7.65570 7.77109 7.91094 8.18110 8.66047 8.76676 9.07031 9.46944 10.94444 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.004100 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.502698 B = 6828.285013 C = 7377.859357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.683 5.683 14 C 0.584 3.416 15 O -0.545 6.545 16 C -0.046 4.046 17 N -0.460 5.460 18 C 0.168 3.832 19 O -0.193 6.193 20 C 0.025 3.975 21 C 0.158 3.842 22 H 0.140 0.860 23 C -0.147 4.147 24 C -0.154 4.154 25 C 0.051 3.949 26 O -0.376 6.376 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.101 0.899 32 H 0.264 0.736 33 H 0.398 0.602 34 H 0.253 0.747 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.838 9.702 -10.188 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.329 5.329 14 C 0.367 3.633 15 O -0.425 6.425 16 C -0.167 4.167 17 N -0.189 5.189 18 C -0.060 4.060 19 O -0.079 6.079 20 C -0.031 4.031 21 C 0.100 3.900 22 H 0.157 0.843 23 C -0.184 4.184 24 C -0.191 4.191 25 C -0.026 4.026 26 O -0.295 6.295 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.232 0.768 34 H 0.269 0.731 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.759 9.178 -9.561 17.718 hybrid contribution 0.809 0.420 -0.373 0.985 sum -10.951 9.598 -9.934 17.627 Atomic orbital electron populations 1.21844 0.98323 0.98194 1.01156 1.21943 0.92656 0.99636 1.02453 1.18891 0.94447 0.89295 0.80602 0.93015 1.21236 0.90607 1.38998 1.06345 0.91964 1.24868 0.98638 0.94738 0.95348 1.69896 1.35120 1.37692 1.09315 0.86444 0.84826 0.77600 0.78224 1.20582 1.21077 1.19800 1.46377 1.13829 1.53853 1.18836 1.16714 0.83450 0.79013 0.84086 1.90709 1.51617 1.61591 1.38592 1.22019 0.92390 1.05937 0.96338 1.70824 1.31896 1.16254 0.99950 1.28034 0.79526 0.97615 1.00801 1.84360 1.36809 1.61259 1.25483 1.23542 0.97709 0.98281 0.83611 1.21957 0.79119 0.98795 0.90101 0.84272 1.23326 0.97075 0.95298 1.02719 1.23153 0.94695 1.01143 1.00147 1.23157 0.90845 0.92268 0.96305 1.88480 1.18393 1.60595 1.62051 0.93026 0.94401 0.95734 0.94909 0.88102 0.92576 0.76847 0.73113 0.88491 0.90276 0.89671 0.89737 0.91252 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.15 0.32 -2.78 16 2 C -0.13 -3.15 5.45 -26.74 -0.15 -3.30 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.68 -15.13 5.02 -56.01 -0.28 -15.41 16 14 C 0.58 12.28 6.38 -12.52 -0.08 12.20 16 15 O -0.55 -12.21 11.72 5.27 0.06 -12.14 16 16 C -0.05 -0.83 6.99 -83.02 -0.58 -1.41 16 17 N -0.46 -7.38 11.06 -11.48 -0.13 -7.51 16 18 C 0.17 2.02 13.19 51.96 0.69 2.70 16 19 O -0.19 -2.68 10.73 6.48 0.07 -2.61 16 20 C 0.03 0.40 6.37 -35.08 -0.22 0.18 16 21 C 0.16 2.31 3.67 -26.86 -0.10 2.22 16 22 H 0.14 2.32 5.88 -51.93 -0.31 2.02 16 23 C -0.15 -1.68 6.57 -24.43 -0.16 -1.84 16 24 C -0.15 -1.37 7.02 -24.73 -0.17 -1.55 16 25 C 0.05 0.51 7.80 37.88 0.30 0.80 16 26 O -0.38 -5.39 11.03 -35.25 -0.39 -5.77 16 27 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 28 H 0.04 0.84 5.65 -51.92 -0.29 0.55 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 2.71 5.95 -51.92 -0.31 2.40 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.40 8.33 8.27 -40.82 -0.34 7.99 16 34 H 0.25 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 0.85 8.05 -51.92 -0.42 0.44 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -31.21 330.23 -6.19 -37.40 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.39 Total: 8.28 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.71 Total: 1.06 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.22 Total: -46.90 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.26 Total: -20.53 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.21 -6.19 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332366695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.025 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds