Wall clock time and date at job start Tue Mar 31 2020 06:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 6 6 H 1.07999 * 119.99742 * 119.99976 * 5 3 2 7 7 C 1.37875 * 120.00221 * 300.00211 * 5 3 2 8 8 N 1.31519 * 119.99615 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99983 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47285 * 89.99870 * 9 7 5 11 11 H 1.48503 * 109.47250 * 209.99665 * 9 7 5 12 12 H 1.48499 * 109.47267 * 329.99827 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 14 14 C 1.34777 * 120.00075 * 84.99755 * 13 3 2 15 15 O 1.21613 * 120.00023 * 0.02562 * 14 13 3 16 16 C 1.47415 * 120.00217 * 179.97438 * 14 13 3 17 17 N 1.36068 * 126.44679 * 0.03153 * 16 14 13 18 18 C 1.29939 * 108.47698 * 179.97438 * 17 16 14 19 19 O 1.34056 * 109.24291 * 359.97438 * 18 17 16 20 20 C 1.34258 * 108.22395 * 359.77149 * 19 18 17 21 21 C 1.50698 * 126.52219 * 180.22515 * 20 19 18 22 22 H 1.09002 * 110.27279 * 164.45981 * 21 20 19 23 23 C 1.54944 * 110.31517 * 286.55216 * 21 20 19 24 24 C 1.55410 * 100.89478 * 155.28686 * 23 21 20 25 25 C 1.54379 * 102.31037 * 325.99166 * 24 23 21 26 26 O 1.43240 * 107.58878 * 21.28760 * 25 24 23 27 27 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 28 28 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 29 29 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 31 31 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 32 32 H 0.96997 * 119.99545 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00274 * 264.99726 * 13 3 2 34 34 H 1.07998 * 125.37973 * 180.02562 * 18 17 16 35 35 H 1.08995 * 111.12576 * 273.28575 * 23 21 20 36 36 H 1.09008 * 111.12244 * 37.44034 * 23 21 20 37 37 H 1.09006 * 110.88418 * 207.75438 * 24 23 21 38 38 H 1.09000 * 110.93381 * 84.25901 * 24 23 21 39 39 H 1.08993 * 109.83233 * 261.76770 * 25 24 23 40 40 H 1.09001 * 109.82901 * 140.79854 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4060 0.3374 2.1734 9 14 6.0049 0.8799 1.3812 10 1 6.4428 2.1128 2.0837 11 1 6.4389 -0.3112 2.1547 12 1 6.6130 0.8393 0.0271 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3414 2.6326 -0.4317 16 6 0.0455 3.3239 -2.6265 17 7 0.8060 3.4361 -3.7492 18 6 0.1222 4.0800 -4.6471 19 8 -1.0789 4.3979 -4.1438 20 6 -1.1451 3.9293 -2.8874 21 6 -2.3138 4.0537 -1.9442 22 1 -2.2021 3.3600 -1.1109 23 6 -2.4308 5.5077 -1.4215 24 6 -3.9413 5.5695 -1.0612 25 6 -4.5743 4.6641 -2.1395 26 8 -3.5451 3.8028 -2.6401 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 3.8291 -0.0604 2.9503 33 1 2.2720 2.1231 -1.9978 34 1 0.4667 4.3203 -5.6421 35 1 -1.8084 5.6594 -0.5397 36 1 -2.1842 6.2269 -2.2026 37 1 -4.3183 6.5892 -1.1407 38 1 -4.1204 5.1684 -0.0636 39 1 -4.9712 5.2758 -2.9495 40 1 -5.3735 4.0679 -1.6990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332366695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:13 Heat of formation + Delta-G solvation = -88.503034 kcal Electronic energy + Delta-G solvation = -24233.936876 eV Core-core repulsion = 20628.372652 eV Total energy + Delta-G solvation = -3605.564224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.49817 -40.66099 -40.33821 -37.03064 -35.90518 -34.28782 -33.39303 -32.83744 -32.55241 -29.52922 -28.75452 -25.70896 -24.55867 -24.45994 -22.68173 -22.54534 -21.76073 -21.22955 -19.63769 -18.24674 -17.84826 -17.81789 -17.40484 -17.27166 -16.69605 -16.23775 -16.18280 -15.88109 -15.11013 -14.95197 -14.62024 -14.58399 -14.17831 -13.92835 -13.52035 -13.18940 -12.95791 -12.90793 -12.85088 -12.69848 -12.41867 -12.37858 -12.19214 -12.09085 -11.94621 -11.81366 -11.60599 -11.08846 -11.04341 -10.71576 -10.53724 -10.06937 -9.66425 -8.16990 -6.34003 -0.04913 1.09456 1.44722 1.45245 1.49032 1.56370 2.28379 2.31131 2.51953 2.68745 3.12276 3.15777 3.39996 3.43495 3.88558 3.89874 4.04227 4.16109 4.27258 4.39052 4.48117 4.55004 4.55750 4.72599 4.74344 4.82333 4.90383 4.93139 5.03962 5.15527 5.17262 5.24090 5.41020 5.51169 5.58633 5.76105 5.83202 5.86585 6.13757 6.40629 6.71110 6.89724 7.27222 7.43310 8.88545 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.004100 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.502698 B = 6828.285013 C = 7377.859357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.009 0.991 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.970 3.030 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.264 1.264 13 N -0.686 5.686 14 C 0.582 3.418 15 O -0.566 6.566 16 C -0.077 4.077 17 N -0.495 5.495 18 C 0.202 3.798 19 O -0.189 6.189 20 C 0.033 3.967 21 C 0.152 3.848 22 H 0.111 0.889 23 C -0.143 4.143 24 C -0.144 4.144 25 C 0.041 3.959 26 O -0.397 6.397 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.266 0.734 33 H 0.404 0.596 34 H 0.312 0.688 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 11.002 -12.209 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.027 0.973 5 C -0.590 4.590 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.795 3.205 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.189 1.189 13 N -0.333 5.333 14 C 0.368 3.632 15 O -0.448 6.448 16 C -0.196 4.196 17 N -0.223 5.223 18 C -0.026 4.026 19 O -0.075 6.075 20 C -0.025 4.025 21 C 0.095 3.905 22 H 0.129 0.871 23 C -0.181 4.181 24 C -0.181 4.181 25 C -0.035 4.035 26 O -0.317 6.317 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.327 0.673 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.988 10.483 -11.595 19.699 hybrid contribution 0.786 0.066 0.171 0.807 sum -11.202 10.549 -11.424 19.164 Atomic orbital electron populations 1.21675 0.96798 0.99335 1.00255 1.21797 0.93928 0.98949 1.01335 1.18503 0.93894 0.89305 0.80728 0.97330 1.21529 0.91326 1.39335 1.06816 0.91605 1.25714 1.03304 0.94160 0.94862 1.70029 1.37031 1.38133 1.09755 0.85378 0.79084 0.77601 0.78480 1.20239 1.20632 1.18856 1.46158 1.14691 1.54560 1.17917 1.17085 0.82600 0.78394 0.85155 1.90693 1.52004 1.62159 1.39894 1.21522 0.93971 1.08024 0.96071 1.70776 1.32852 1.18558 1.00130 1.29365 0.77813 0.93954 1.01493 1.84404 1.37667 1.61093 1.24365 1.23655 0.97268 0.97191 0.84375 1.21818 0.79311 1.00152 0.89253 0.87144 1.23318 0.98946 0.93255 1.02552 1.23167 0.92518 1.02643 0.99820 1.23455 0.90095 0.92478 0.97433 1.88447 1.18849 1.62046 1.62372 0.94640 0.94508 0.93442 0.94559 0.90398 0.92436 0.76179 0.67306 0.89270 0.89236 0.86720 0.89627 0.89241 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.51 71.98 0.61 -5.09 16 2 C -0.12 -6.16 5.45 30.59 0.17 -5.99 16 3 C 0.28 14.77 2.24 44.24 0.10 14.86 16 4 H 0.01 0.54 7.58 -2.39 -0.02 0.52 16 5 C -0.55 -30.18 8.73 25.60 0.22 -29.96 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -52.09 11.29 21.45 0.24 -51.85 16 9 Si 0.97 42.69 29.54 68.60 2.03 44.71 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 13 N -0.69 -31.51 5.02 -449.37 -2.26 -33.77 16 14 C 0.58 25.44 6.38 86.66 0.55 25.99 16 15 O -0.57 -26.75 11.72 -4.07 -0.05 -26.80 16 16 C -0.08 -2.79 6.99 40.41 0.28 -2.51 16 17 N -0.49 -15.24 11.06 -305.14 -3.37 -18.62 16 18 C 0.20 4.19 13.19 130.52 1.72 5.92 16 19 O -0.19 -4.80 10.73 0.34 0.00 -4.79 16 20 C 0.03 1.03 6.37 25.19 0.16 1.19 16 21 C 0.15 4.49 3.67 30.51 0.11 4.60 16 22 H 0.11 3.89 5.88 -2.39 -0.01 3.87 16 23 C -0.14 -3.15 6.57 32.09 0.21 -2.94 16 24 C -0.14 -2.29 7.02 31.89 0.22 -2.07 16 25 C 0.04 0.74 7.80 72.45 0.56 1.31 16 26 O -0.40 -11.07 11.03 -148.96 -1.64 -12.71 16 27 H 0.03 1.71 7.84 -2.39 -0.02 1.69 16 28 H 0.04 1.68 5.65 -2.38 -0.01 1.67 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 4.34 5.95 -2.38 -0.01 4.33 16 32 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.40 17.34 8.27 -92.71 -0.77 16.57 16 34 H 0.31 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 1.77 8.05 -2.38 -0.02 1.75 16 37 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -70.54 330.23 0.64 -69.90 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.30 Total: 27.06 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.38 Total: 6.86 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.39 Total: -104.23 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.69 Total: -44.30 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -70.54 0.64 -69.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332366695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.603 kcal (2) G-P(sol) polarization free energy of solvation -70.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds