Wall clock time and date at job start Tue Mar 31 2020 07:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99537 * 2 1 4 4 C 1.53005 * 109.46701 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47310 * 65.00087 * 4 3 2 6 6 C 1.35425 * 117.00238 * 179.97438 * 5 4 3 7 7 N 1.32237 * 119.79796 * 359.97438 * 6 5 4 8 8 C 1.31878 * 121.80101 * 180.02562 * 7 6 5 9 9 C 1.38359 * 121.18342 * 0.02562 * 8 7 6 10 10 C 1.38337 * 119.46115 * 359.70199 * 9 8 7 11 11 C 1.39992 * 118.34301 * 0.56392 * 10 9 8 12 12 C 1.47526 * 120.59559 * 179.71542 * 11 10 9 13 13 O 1.21589 * 120.00330 * 179.72385 * 12 11 10 14 14 N 1.34779 * 119.99854 * 359.71729 * 12 11 10 15 15 C 1.46496 * 119.99965 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.47464 * 325.00834 * 15 14 12 17 17 C 1.53006 * 109.46995 * 85.00573 * 15 14 12 18 18 C 1.50699 * 109.47248 * 205.00258 * 15 14 12 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99908 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00364 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99946 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47324 * 59.99539 * 22 20 18 24 24 H 1.48494 * 109.47376 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46921 * 299.99915 * 22 20 18 26 26 H 1.08999 * 109.47104 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47112 * 299.99644 * 1 2 3 28 28 H 1.09000 * 109.47394 * 59.99479 * 1 2 3 29 29 H 1.08993 * 109.47447 * 60.00929 * 3 2 1 30 30 H 1.09000 * 109.47439 * 299.99892 * 3 2 1 31 31 H 1.09005 * 109.47062 * 305.00437 * 4 3 2 32 32 H 1.08998 * 109.47215 * 185.00362 * 4 3 2 33 33 H 1.08001 * 119.40968 * 179.97438 * 8 7 6 34 34 H 1.08001 * 120.26937 * 179.97438 * 9 8 7 35 35 H 1.07993 * 120.82866 * 180.27906 * 10 9 8 36 36 H 0.97003 * 120.00044 * 0.02562 * 14 12 11 37 37 H 1.09001 * 109.47002 * 299.99701 * 17 15 14 38 38 H 1.08993 * 109.46955 * 60.00138 * 17 15 14 39 39 H 1.09000 * 109.47050 * 179.97438 * 17 15 14 40 40 H 0.96999 * 120.00396 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5798 -1.2220 6 6 5.2973 0.3995 -1.3836 7 7 6.1322 0.7799 -0.4313 8 6 7.4365 0.6238 -0.5474 9 6 7.9917 0.0518 -1.6783 10 6 7.1643 -0.3697 -2.7037 11 6 5.7835 -0.1884 -2.5607 12 6 4.8561 -0.6138 -3.6262 13 8 3.6584 -0.4558 -3.4885 14 7 5.3364 -1.1776 -4.7522 15 6 4.4154 -1.5996 -5.8105 16 1 3.4931 -1.9702 -5.3631 17 6 4.0996 -0.4080 -6.7168 18 6 5.0541 -2.6948 -6.6251 19 1 6.0467 -3.0421 -6.3788 20 6 4.3714 -3.2534 -7.6847 21 7 3.1626 -2.8309 -7.9843 22 14 5.1629 -4.6115 -8.6940 23 1 5.4684 -5.7682 -7.8142 24 1 4.2294 -5.0392 -9.7668 25 1 6.4199 -4.1072 -9.3030 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6887 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1766 0.0890 33 1 8.0830 0.9489 0.2543 34 1 9.0620 -0.0686 -1.7580 35 1 7.5736 -0.8231 -3.5943 36 1 6.2918 -1.3040 -4.8620 37 1 3.6376 0.3842 -6.1276 38 1 5.0218 -0.0374 -7.1642 39 1 3.4148 -0.7220 -7.5045 40 1 2.6821 -3.2241 -8.7295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338063663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:13 Heat of formation + Delta-G solvation = -79.796694 kcal Electronic energy + Delta-G solvation = -23582.077916 eV Core-core repulsion = 19976.891227 eV Total energy + Delta-G solvation = -3605.186689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69293 -38.54062 -38.13234 -37.22120 -34.69261 -32.91064 -31.97733 -31.32523 -29.79976 -28.55750 -26.32408 -25.22496 -24.52239 -23.59385 -22.14726 -21.20957 -19.45269 -18.58363 -17.60454 -16.89859 -16.79285 -15.94831 -15.64246 -15.44528 -15.17790 -15.02181 -14.66796 -14.38972 -13.98835 -13.59001 -13.32534 -13.14092 -12.85077 -12.42198 -12.36529 -12.22386 -11.64251 -11.55599 -11.37787 -11.06754 -10.93341 -10.87542 -10.69638 -10.29319 -10.19562 -9.88599 -9.84895 -9.67049 -9.01502 -8.91689 -8.50929 -8.42080 -7.80927 -6.08495 -4.17790 0.85563 1.29383 3.07232 3.27816 3.33024 3.34068 3.41213 3.74613 3.99216 4.19747 4.31334 4.44873 4.78264 4.90722 4.94252 5.04016 5.15065 5.22897 5.24723 5.26947 5.36876 5.38528 5.46598 5.68921 5.70764 5.71652 5.92566 6.11136 6.36871 6.88105 7.02542 7.12553 7.20307 7.37472 7.52062 7.61021 7.71987 7.82067 7.97221 8.19349 8.71514 8.83104 9.19966 9.49753 10.97487 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.004332 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.949383 B = 6462.629657 C = 8022.841981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.063 3.937 4 C 0.068 3.932 5 O -0.255 6.255 6 C 0.367 3.633 7 N -0.551 5.551 8 C 0.153 3.847 9 C -0.223 4.223 10 C -0.013 4.013 11 C -0.194 4.194 12 C 0.546 3.454 13 O -0.524 6.524 14 N -0.706 5.706 15 C 0.266 3.734 16 H 0.050 0.950 17 C -0.146 4.146 18 C -0.534 4.534 19 H 0.060 0.940 20 C 0.067 3.933 21 N -0.883 5.883 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.086 0.914 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.385 0.615 37 H 0.015 0.985 38 H 0.025 0.975 39 H 0.090 0.910 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 8.724 15.570 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.014 4.014 4 C -0.008 4.008 5 O -0.159 6.159 6 C 0.187 3.813 7 N -0.276 5.276 8 C -0.004 4.004 9 C -0.243 4.243 10 C -0.038 4.038 11 C -0.201 4.201 12 C 0.330 3.670 13 O -0.402 6.402 14 N -0.355 5.355 15 C 0.165 3.835 16 H 0.068 0.932 17 C -0.205 4.205 18 C -0.572 4.572 19 H 0.078 0.922 20 C -0.136 4.136 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.105 0.895 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.177 0.823 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.218 0.782 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.678 8.936 16.065 18.747 hybrid contribution 1.200 -0.825 -1.161 1.862 sum 4.878 8.110 14.904 17.655 Atomic orbital electron populations 1.22733 0.81018 1.02966 0.99663 1.88007 1.19680 1.26825 1.95321 1.22577 0.91722 0.86014 1.01089 1.22703 0.93073 0.98592 0.86457 1.86643 1.16465 1.74434 1.38392 1.19868 0.84510 0.88368 0.88509 1.67432 1.05565 1.24090 1.30471 1.22528 0.89607 0.91950 0.96269 1.21878 1.01392 1.05320 0.95737 1.21729 0.91235 0.92476 0.98407 1.20465 0.94779 1.08236 0.96587 1.17772 0.87783 0.79424 0.82030 1.90807 1.14937 1.54982 1.79440 1.46431 1.10892 1.60276 1.17939 1.18739 0.89619 0.92068 0.83092 0.93223 1.22075 1.00301 0.97020 1.01107 1.21176 1.02548 1.19332 1.14164 0.92169 1.24879 0.94820 0.96945 0.97005 1.69894 1.11381 1.41848 1.28934 0.86512 0.79007 0.81949 0.79632 1.20185 1.21145 1.20185 0.89542 0.94483 0.93778 0.91429 0.91972 0.90869 0.90251 0.82292 0.84210 0.83648 0.78240 0.96602 0.95540 0.89155 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.88 10.67 -40.08 -0.43 -6.31 16 3 C 0.06 0.79 6.32 37.16 0.23 1.03 16 4 C 0.07 0.93 5.69 37.16 0.21 1.14 16 5 O -0.26 -4.76 8.18 -43.72 -0.36 -5.11 16 6 C 0.37 6.39 7.51 -16.61 -0.12 6.26 16 7 N -0.55 -7.90 9.21 -12.98 -0.12 -8.02 16 8 C 0.15 1.69 11.17 -17.49 -0.20 1.49 16 9 C -0.22 -2.35 10.09 -39.50 -0.40 -2.75 16 10 C -0.01 -0.17 9.64 -38.89 -0.37 -0.54 16 11 C -0.19 -3.45 5.90 -104.69 -0.62 -4.06 16 12 C 0.55 12.04 7.74 -12.47 -0.10 11.94 16 13 O -0.52 -13.65 14.85 -16.48 -0.24 -13.89 16 14 N -0.71 -15.43 5.02 -55.98 -0.28 -15.71 16 15 C 0.27 6.98 2.56 -69.08 -0.18 6.80 16 16 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 17 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 18 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 21 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 22 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.15 1.65 6.51 -52.49 -0.34 1.31 16 36 H 0.38 7.11 6.64 -40.82 -0.27 6.84 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -34.51 343.19 -6.64 -41.15 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.51 Total: 5.02 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.48 Total: 6.50 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.23 Total: -48.27 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.03 Total: -25.31 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.51 -6.64 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338063663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.648 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds